BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03290.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470307 jgi|Araly1|470307|fgenesh2_kg.1__261__AT1G03290.1 2748 0.0
> Ahg470307 jgi|Araly1|470307|fgenesh2_kg.1__261__AT1G03290.1
Length=1840
Score = 2748 bits (1488), Expect = 0.0
Identities = 1728/1844 (94%), Gaps = 15/1844 (1%)
Strand=Plus/Plus
Query 28 TCCTCACAGCTCTCGCTTCTGATCTCTTACTTG-CACAGAAATCGAAAATTTTCTAAAGC 86
||||||||||||||||||||||||||||||||| | || |||||||| |||| ||||||
Sbjct 1 TCCTCACAGCTCTCGCTTCTGATCTCTTACTTGCCTCAAAAATCGAATATTTGCTAAAGG 60
Query 87 TTTTGTTCTATTCTCTTCGTTTTCCTCTGAGTTTATTAACTTTCACTGATGGGTTTCGGT 146
||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 61 TTTTGTTGTATTCTCTTCGTTTTTCTCTGAGTGTATTAACTTTCACTCATGGGTTTCGGT 120
Query 147 TCTGTTTATCGATCTCTAACGGAAATATTTCCTCAGATTGATGCACGAATTTTGAGGGCT 206
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 121 TCTGTTTATCGATCTCTAACGGAAATCTTTCCTCAGATTGATGCACGAATTTTGAGAGCT 180
Query 207 GTTGCAATAGAACACCCAAAGGATGCTGATGAAGCTGCTGCTGTGGTTCTTTCAGAGATT 266
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTGCAATCGAACACCCCAAGGATGCTGATGAAGCTGCTGCTGTGGTTCTTTCAGAGATT 240
Query 267 ATTCCTTCCTTTTCCTCAAATTTGTTCCATAATTTTACTCAATCTTCGTACAAGTCATCT 326
|||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 241 ATTCCTTCATTTTCCTCAAATTTGTCCCATAATCTTACTCAATCTTCCAACAAGTCATCT 300
Query 327 GGAAGCATTTCAGAGCGCGAAGTAGAACATGGTTTGGAAGATGTTGCTTCTAGGTGCCGC 386
||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 301 GGAAGTATTTCAGACCGCGAAGTAGAACGTGGTTTGGAAGATGTTGTTTCTAGGTGCCGC 360
Query 387 CCTTTTCTTGGAGCTTCTGGCTCAAAGGCCAGCA---cttcttc---ttcttcttcttct 440
|||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||
Sbjct 361 CCTTTTCTTGGAGCTTCTGGTTCAAAGCCCAGCACTTCTTCTTCTTGTTCTTCTTCTTCT 420
Query 441 tcAGAAACTCTTCCCCTGGTTGTTACCCGTGACCACAATACCCGTGCTCTAAGTACTGAT 500
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 421 TCAGAAACTCTTCCCTTGGTTGTTGTCCGTGACCACAATTCCCGTGCTCTAAGTACTGAT 480
Query 501 TTGGTCTCAAACATGAACGAGCTAACAACCTTGCAACCAAATGTTGATCCTGATGTTTGC 560
|||||||||| |||||||||||||||| |||||||||||||| | || ||||||||||
Sbjct 481 CTGGTCTCAAATATGAACGAGCTAACAAATTTGCAACCAAATGTCGGTCTTGATGTTTGC 540
Query 561 CATAAAGACCTTGAAAGTGAGGAAATTCAATCAGTGAAAAAGGCTCGTGGAAAAGAGAAT 620
||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 541 CATAAAGACCTGGAAAGTGAGGAAGTTCAATCTTTGAAAAAGGCTCGTGGAAAAGAGCAC 600
Query 621 GGAAACTATGATTTATTTGGTAGGTGTTTTGATGTTACGAGCAATGCAAAAATTGGTTTG 680
| |||||||||| | |||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 601 GAAAACTATGATCTCTTTGGTAGGTGTTTTGATGTTAAGAGCAATGCAAAACTTGGCTTG 660
Query 681 GATGTGCCAGAGGATGATATTGCCTCAGTCGTCTCT-CTCTTTTCCCTAGATAATGTTAA 739
|||||||||| |||||||| ||||||||||||||| | | |||||||||||||| ||||
Sbjct 661 CATGTGCCAGATGATGATATCGCCTCAGTCGTCTCTGC-CATTTCCCTAGATAATATTAA 719
Query 740 ATTGGCTAGCAATTTTTGGGAAGATCTTGGTTTTGATATCACATGGAATCAAGCAGAAAA 799
|||| ||||| |||||||||||||||| |||||| ||| ||||||||||||||||| ||
Sbjct 720 ATTGACTAGCGGTTTTTGGGAAGATCTTTGTTTTGGTATGACATGGAATCAAGCAGATAA 779
Query 800 TGCTGTATCGAAGCTGGTCGATTCAACTCCTGGGGATACTATGACAACTACACAGCAAGG 859
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 780 TGCTGTATCGAAGCTGGTCGATTCAACTCCTGGGGATACTACGACAACTACACAGCAGGG 839
Query 860 TTCATGTTTTGAAGTTGGC-CATGGGAGTACAAATCTTGTGGACGAGACTTCAAATCGTT 918
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 840 TTCATGTTTTGAAGTTGACTC-TGGGAGTACAAATCTTGTGGACGAGACTTCAAATCATT 898
Query 919 CTTTGTTCTCTGAAAATGGTGATACTGAAATAGGTGATGCTTTTAGCACATCAACGCATG 978
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 CATTGGTCTCTGAAAATGGTGATACTGAAATAGGTGATGCTTTTAGCACATCAACCCATG 958
Query 979 TATGCAGCGTTGATCAACTTGAAGATATTATTGAAGATGCCAAAAGTAATAAGAAAAACT 1038
|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||| ||
Sbjct 959 TATGCAGCGTTGATCACCTTGAAGAGATTATTGAGGATGCCAAAAGTAACAAGAAAACCT 1018
Query 1039 TGCTTACTGAGATGGAAACGGTTACAAATATAATGAGAGAAGTTGAAC-TAAAGGAGAAA 1097
|| |||||||||||||||||||||| ||| |||||||||||||||||| | || |||||
Sbjct 1019 TGTTTACTGAGATGGAAACGGTTACGAATTTAATGAGAGAAGTTGAACTTCAA-GAGAAG 1077
Query 1098 GATGCAGAGAAGTCAAAGGAGGAAGCTGCTAGGGGAGGTTTAGATACTCTTCAAAAGGTT 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATGCAGAGAAGTCAAAGGAGGAAGCTGCTAGGGGAGGTTTAGATACTCTTCAAAAGGTC 1137
Query 1158 GAGGAGCTCAAGAAGATGCTGGAACATGCGAAGGAAGCAAATGACATGCATGCTGGAGAA 1217
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 GAGGAGCTCAAGAAGATGCTGGAACATGCAAAGGAAGCAAATGACATGCATGCTGGAGAA 1197
Query 1218 GTATATGGAGAGAAGTCAATTTTGGCCACTGAAGTAAAAGAGCTTGAAAACCGGTTGCTC 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTATATGGAGAGAAGTCAATTTTGGCCACTGAAGTAAAAGAGCTTGAAAACCGGTTGCTC 1257
Query 1278 AACTTATCAGAAGAAAGAAACAAATCTCTTGCTATCCTTGATGAGATGCGAGGAAGTCTC 1337
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AACTTATCAGAAGAACGAAACAAATCTCTTGCTATCCTTGATGAGATGCGAGGAAGTCTC 1317
Query 1338 GAAATAAGACTAGC-AGCAGCACTGGAGTTgaaaaagactgctgagaaagaaaagaaaga 1396
|||||||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 1318 GAAATAAGACTAGCGA-CAGCACTTGAGATGAAAAAGACTGCTGAGCAAGAAAAGAAAAA 1376
Query 1397 caaagaagaTTCTGCACTTAAGGCACTTGCTGAGCAAGAAGCCAACATGGAGAAAGTGGT 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CAAAGAAGATTCTGCACTTAAGGCACTTGCTGAGCAAGAAGCCAACATGGAGAAAGTGGT 1436
Query 1457 CCAAGAATCGAAGCTTCTACAGCAGGAGGCAGAGGAAAATTCCAAGCTTCGAGATTTTCT 1516
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1437 CCAAGAATCAAAGCTTCTACAGCAGGAGGCAGAGGAAAATTCCAAGCTTCGAGAGTTTCT 1496
Query 1517 TATGGATCGTGGTCAGATTGTTGATACCTTACAAGGAGAAATTTCTGTGATCTGTCAAGA 1576
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1497 TATGGATCGTGGTCAGATTGTTGATTCCTTACAAGGAGAAATTTCTGTGATCTGTCAAGA 1556
Query 1577 TGTGAAGCTGTTGAAAGAAAAATTTGAAAACCGAGTGCCTTTAACCAAATCGATCTCCTC 1636
|||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1557 TGTGAAGCTGTTGAAAGAGAAATTCGAAAACCGAGTGCCATTAACCAAATCAATCTCCTC 1616
Query 1637 AAGCTTCACTAGTTCATGCGGATCATCTATGAAAAGCTTGGTGCTCGAGAACCCTTCTGA 1696
|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1617 AAGCCTCACTAGTTCATGCGGATCATCTATGAGAAGCTTGGTGCTCGAGAATCCTTCTGA 1676
Query 1697 GCGATTGAATGGAGTGACTGAAACCTCAAACAACAACAAGTTCCCAGAAGCAGCAGCTTT 1756
|||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||
Sbjct 1677 GCGATTGAATGGAGTGCCTGAAACCTCAAGCAACAAGAACTTCCCAGAAGCAGCAGCTTC 1736
Query 1757 CTTCATGAACAAAGAGAAAGATGATTGTAGAGATCTTCTTGAAGATGGATGGGACATCTT 1816
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1737 CTTCATGAACAAAGAGAAAGATGATTGTAGAGATCTTCTTGAAGATGGTTGGGACATCTT 1796
Query 1817 TGACAAGGAGACCGAACAAGTTGTTTGGTACTGAAGAATGAAGT 1860
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1797 CGACAAGGAGACCGAACAAGTTGTTTGGTACTGAAGAATAAAGT 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5