BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03300.1
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311431 jgi|Araly1|311431|fgenesh1_pm.C_scaffold_1000211 1524 0.0
Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1 534 8e-151
> Ahg311431 jgi|Araly1|311431|fgenesh1_pm.C_scaffold_1000211
Length=1950
Score = 1524 bits (825), Expect = 0.0
Identities = 1238/1423 (87%), Gaps = 85/1423 (6%)
Strand=Plus/Plus
Query 5 CGATTTTCAAAGATTGTGAAGTAGAGATCT-TCTCTGAAGAAGATGGGTTTAGAAACGCT 63
|||||||||||||||||||||| ||||||| | ||| ||||||| |||||||||||||||
Sbjct 11 CGATTTTCAAAGATTGTGAAGTTGAGATCTGT-TCTCAAGAAGAAGGGTTTAGAAACGCT 69
Query 64 TGGTACAGAGCAATTCTGGAGGAAACCCCAACGAATCCGACA-TCGGAAAGCAAAAAGCT 122
|||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct 70 TGGTACAGAGCAATTCTGGAAGAAACCCCAACGAATCCGA-ATTCGGAAAGCAAAAAGCT 128
Query 123 ACGAT-TTAGTTACATGACGAAGTCGCTCAACAAAGAAGGTTCTTCGTCTCCTCC-AACG 180
|| | || ||| || | ||| | ||||||||||||||| | ||||||| || ||||
Sbjct 129 TCG-TGTTCGTT--AT-ATGAACTTGCTCAACAAAGAAGG---TGCGTCTCC-CCAAACG 180
Query 181 GTCGAACAGAGGTTCATAAGACCGGTTCCGCCGGAAAACCTTTACAACGGCGTCGTTTTT 240
||||||||| |||| || |||| || ||||||||||| || |||||||||||||||||
Sbjct 181 GTCGAACAGGGGTTTATCCGACCAGTCCCGCCGGAAAATCTATACAACGGCGTCGTTTTA 240
Query 241 GAGGAAGGAACGATGGTTGATGCTGATTACAAACACA-GATGGAGAACCGGCGTTGTGAT 299
|||||||||||| |||||||||||||||||||||| | ||||| | ||||| ||||||||
Sbjct 241 GAGGAAGGAACGGTGGTTGATGCTGATTACAAACA-AGGATGGTGGACCGGTGTTGTGAT 299
Query 300 AAATAAAATGGAGAACGACAGCTATTTGGTTCT-CTTCGATTGTCCACCAGACATTATTC 358
||| ||||||||| ||| |||||||||||| | |||||||| |||||||||||||||||
Sbjct 300 AAAGAAAATGGAGGACGGGAGCTATTTGGTT-TACTTCGATTTTCCACCAGACATTATTC 358
Query 359 AGTTCGAGACAAAGCATTTGCGAGCACATCTTGACTGGACGGGTTCGGAATGGGTCCAAC 418
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 359 AGTTCGAGACAAAGCATTTGCGAGCACATCTTGACTGGACCGGTAAGGAATGGGTCCGAC 418
Query 419 CAGAAGTCAGGGAACTGAGTAAGTCCATGTTTAGCCCTGGGACATTAGTTGAAGTAAGTT 478
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 CAGAAGTTAGGGAACTGAGTAAGTCCATGTTTAGCCCCGGGACATTAGTTGAAGTAAGTT 478
Query 479 GTGTAATAGATAAAGTTGAAGTTTCCTGGGTTACGGCAATGATAGTTAAGGAGATTGAGG 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 GTGTAATAGATAAAGTTGAAGTTTCCTGGGTTACTGCAATGATAGTTAAGGAGATTGAGG 538
Query 539 AGAGTGGTGAGAAGAAATTTATAGTGAAGGTATGCAATAAACACTTGAGTTGCCGTGTTG 598
| |||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||
Sbjct 539 ATAGTGGTGAGAAGAAATTTATAGTGAAGGCATGGAATAAACACTTGAGATGTAGTGTTG 598
Query 599 ATGAGGCAAAACCAAACATGACGGTTGATTCATGCTGTGTTAGGCCTAGACCGCCTCttt 658
|||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||| |
Sbjct 599 ATGAGGCAAAACCAAAAATGACCGTTGATTCACGCTGTGTTAGGCCTACACCGCCTC-CT 657
Query 659 ttttC-GTTGAAGAGTATGACTTGCGTGATTGTGTAGA-G-G-TGTTTCATGGTTCGAGT 714
||||| ||||||||||||||||||| |||||||||||| | | ||||||||||||| |||
Sbjct 658 TTTTCGGTTGAAGAGTATGACTTGCTTGATTGTGTAGAGGTGTTGTTTCATGGTTCCAGT 717
Query 715 TGGCGTCAAGGGGTGGTGAAGGGAGTTCACATTGAGAAACAGTACACGGTTACTTTAGAG 774
||||||||||||||||||| |||||||| || |||||||||||||| ||||| ||||||
Sbjct 718 TGGCGTCAAGGGGTGGTGATGGGAGTTCTCACTGAGAAACAGTACATGGTTAGGTTAGAG 777
Query 775 GCTACCAAGGATAAGTTGGTCGTGAAACACTCGGATCTTAGGCCTTTTAAGGTGTGGGAA 834
||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCTACAAAGGATGACTTGGAATTGAAACACTCGGATCTTAGGCCTTTTAAGGTGTGGGAA 837
Query 835 GATGGGGTTTGGCATAACGGACCACAGCAGAAACCCGTAAAGGAAAGTCCTTCCAACGCC 894
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 838 GATGGGGTTTGGCATAACGGACCACAGCAAAAACCCGTAAACGAAAGTCCTTCCAACGAC 897
Query 895 ATCAAACAGAAGCCAATGTGCTCTTCTTCTGGTGCTAGGCCAATGACTCCTAAAATGGCT 954
||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 898 ATCAAACAGAAGCCAATGTGCTCTTCTCCTGGTGCTAGGCCAATG-----------G-CT 945
Query 955 ACAAAACATGCGAGAATATCTTTTAACCCTGAGGAAAATGTCGAGGA-ACTCTCTGTAGC 1013
||||||||| |||||| |||| | || ||||||||||||| |||| | | ||||||||||
Sbjct 946 ACAAAACATACGAGAAGATCTCTAAATCCTGAGGAAAATGGCGAG-ACATTCTCTGTAGC 1004
Query 1014 TGAAACTGTTGCTGCCACTGGAAAGTTGGAAAAGATGGGGATTG-CAGAAGAATCTGTTT 1072
||||||||||||||||||||||||| || | ||| | | |||||||||||||||
Sbjct 1005 TGAAACTGTTGCTGCCACTGGAAAG----AA--G--GGG--TCGGCAGAAGAATCTGTTT 1054
Query 1073 CATGTGTAACACCGTTGAAACAAA-CA--GA-GGCC--AA--CGC-TGAAGGAA-ACAAA 1122
||| |||||||||||||||||||| | || || || | | ||| | || |||
Sbjct 1055 CATTTGTAACACCGTTGAAACAAAACGCTGAAGGAATGAAATCTCCTGA-G-AAGACA-- 1110
Query 1123 CTTGAGCCGATGCGGAATCAGAATTGCTTGAGAAATGATTCAACTCAACAGATGTTGCCT 1182
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1111 CTTGAGCCGATGAGGAATCAGAATAGCTTGGGAAATGATTCAACTCAACAGAAGTTGCCA 1170
Query 1183 GAGGAGGAGAATAGCAAAGACGGGAGCACAAAAAGGAAGAGAGAAGAAAAACACAACTCA 1242
|||||||||||||||||||| ||||||| ||||||||| ||||||||| | |
Sbjct 1171 GAGGAGGAGAATAGCAAAGATGGGAGCAGAAAAAGGAAAAGAGAAGAA---------T-A 1220
Query 1243 GCTTCTTCCGTTATGGATGAAATTGATGGGACTTGTAATGGTTCAGAGTCTGAGATTAGT 1302
| || | | |||||| ||||||||| ||||||| ||||||| ||||||| |||
Sbjct 1221 -C--CT---G--A---ATGAAACTGATGGGACATGTAATGTTTCAGAGGCTGAGATAAGT 1269
Query 1303 AATACAGGTAAAAGTATCTGCAACAATGATGATGTTGATGATCAGCCGCTCTCTACTGAG 1362
|||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1270 GATACAGGTAAAATTATCTGCAACAATGATGATGCTGATGATCAGCCATTCTCTACTGAG 1329
Query 1363 CTA-CCATATTATCAGAGCTTGAGTGTGGTGAACAGTTTTGCT 1404
||| || | ||||||||||| ||||||||| | |||||||||
Sbjct 1330 CTATCC-TCTTATCAGAGCTCAAGTGTGGTGCATAGTTTTGCT 1371
Score = 721 bits (390), Expect = 0.0
Identities = 516/576 (90%), Gaps = 12/576 (2%)
Strand=Plus/Plus
Query 1446 TTCTCCTTTTGCAAAGAAGTTACCGTTTTGGAAAAGC-TATGAAACAGATGAATTGTACA 1504
||||||||||| ||||||||| ||||||||||| | | ||||||||| |||| |||||||
Sbjct 1371 TTCTCCTTTTGAAAAGAAGTTGCCGTTTTGGAAGA-CATATGAAACAAATGAGTTGTACA 1429
Query 1505 AATCATTACCACAAAGTCCTCATTTCAGCCCGTTGTTCAAGGCTAAAGAAGATATCCGCG 1564
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1430 AATCAGTACCACAAACTCCTCATTTCAGCCCGTTGCTCAAGGCTAAAGAAGATATTCGCG 1489
Query 1565 AATGGTCCGCGGTTGGTATGATGGTGACTTTCTATTGTTTATTAAAGGAAGTCAAAGATC 1624
||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||| |||
Sbjct 1490 AATGGTCAGCGGTTGGTATGATGGTGACTTTCTATGGTTTATTAGAGGAAGTTAAACATC 1549
Query 1625 TGCAGCTCGATGATTCCTCAAGCAAACTAAGTAGCCTCAG-TAGTTCTTTGGCGGAGCTC 1683
||||||||||||||||||| |||||||||||| ||||| | ||||||||| |||||||||
Sbjct 1550 TGCAGCTCGATGATTCCTCGAGCAAACTAAGTTGCCTC-GCTAGTTCTTTTGCGGAGCTC 1608
Query 1684 GAGAAGCACGGTTTCAACGTTACAGATCCATTGTCACGGATCAGCAAAGTGTTGCCCCTC 1743
|||||||||||||| ||||| || ||||| ||||||||||| |||| ||||| | ||
Sbjct 1609 GAGAAGCACGGTTTTGACGTTGCAAATCCACAGTCACGGATCAACAAATTGTTGTCTTTC 1668
Query 1744 CAAGATAAGCGAGCAAAGAAAGCGGAGgaaagaaaatgtcttgagaagaagattgaatg- 1802
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1669 CAAGATAAGCGAGCAAAGAAAGCAGAGGAAAGAAAATGTCTTGAGAAGAAGATTGAA-GC 1727
Query 1803 tgaagagatcgaaaggaagaggtttgaagaagagTTTGCT-GACTTTGAACGCATAATTA 1861
| |||||||||||||| |||||||||||||||| || | | || ||||||||||||||
Sbjct 1728 TAAAGAGATCGAAAGGCAGAGGTTTGAAGAAGAATT-GATTGAGTTTGAACGCATAATGC 1786
Query 1862 TTGAGAAGAAGAGACAAGCATTGGTTGCCAAGGAGAAGAAAGAAGCGGCTGACAAAAGGA 1921
|||| | |||||||||||||||||||||||| ||||||||||||||| | || |||||||
Sbjct 1787 TTGATATGAAGAGACAAGCATTGGTTGCCAAAGAGAAGAAAGAAGCGACGGAAAAAAGGA 1846
Query 1922 TTGGTGAAATGAAGACATGTGCAGAAACCATTGATCAAGAGATCAAAGATGAGGAGCTTG 1981
||| |||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1847 TTGTTGAAATGAAGTCACGTGCAGAAACCATTGATCAGGAGATTAAAGATGAGGAGCTTG 1906
Query 1982 AGTTTCAGACAA----CTGTCTCGACTCCATGGTAA 2013
|||||||||||| |||||||| |||||||||||
Sbjct 1907 AGTTTCAGACAAGTAACTGTCTCGGCTCCATGGTAA 1942
> Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1
Length=2303
Score = 534 bits (289), Expect = 8e-151
Identities = 730/932 (78%), Gaps = 74/932 (8%)
Strand=Plus/Plus
Query 1122 ACTTGAGCCGATGCGGAATCAGAATTGCTT-GAGAAATGA-TTCAACTCAACA-GATGTT 1178
||||||||| ||| |||||||||| |||| || |||| | |||||||||||| || | |
Sbjct 1305 ACTTGAGCCAATGAAGAATCAGAATGGCTTGGA-AAAT-AGTTCAACTCAACACGA-GAT 1361
Query 1179 GCCTGAGGAGGAGAATAGCAAAGACGGGAGCACAAAAAGGAAGAGAGAAGAAAAACACAA 1238
||||||||||||||||||||| || ||| | ||||||||| |||||| |||| || ||
Sbjct 1362 GCCTGAGGAGGAGAATAGCAACGAAAAGAGTAGAAAAAGGAAAAGAGAACAAAATCA-AA 1420
Query 1239 CTCAGCTTCTTCCGTTATGGATGAAATTGATGGGACTTGTAATGGTTCAGAGTCTGAGAT 1298
| | || | | || |||||| ||||| |||||| ||||||||| || ||| ||
Sbjct 1421 ---A-C-TC-T--GACCTGAATGAAACTGATGAGACTTGCAATGGTTCAAAGGCTG-GA- 1470
Query 1299 TAGTAATACAGGTAAAAGT-ATCTGCA-AC--AATGATGATGTTGATGATCAGCCGCTCT 1354
| | | || |||| |||| || | || ||||||||||||||||||||| ||||
Sbjct 1471 -A-TCA-AC-GGTACAAGTGAT-AATATACGTGTTGATGATGTTGATGATCAGCCTCTCT 1525
Query 1355 CTAC-T-G--------AGCTAC----C-AT-AT-T-ATCAGAGCTTGAGTGTGGTGAACA 1396
|| | | | | |||| | || | | ||||||||| || ||||||||| |
Sbjct 1526 CTGCTTGGATAAATATACCTACAGTGCTATCCTCTGATCAGAGCTCGAATGTGGTGAATA 1585
Query 1397 GTTTTGCTGCTGATGCAGAGGAAACTCCAGCAAAGAGTGCACGAACT-ATTTCTCCTTTT 1455
|| ||||||||||| |||||||||| ||||||| || ||| || | ||| ||||||
Sbjct 1586 ATTCTGCTGCTGATGTTGAGGAAACTCAAGCAAAGGGTACACTAA-TAATTGAGCCTTTT 1644
Query 1456 GCAAAGAAGTTACCGTTTTGGAAAAGC-TATGAAACAGATGAATTG-TACAA-ATCATTA 1512
||||||| || || |||||||||| | ||||||||||| ||| | ||||| | || ||
Sbjct 1645 ACAAAGAATTTGCCATTTTGGAAAA-CATATGAAACAGA-GAAGGGATACAAGA-CAGTA 1701
Query 1513 CCACA-AAGTCCTCATTTCAGCCCGTTGTTCAAGGCT-AAAGAAGATATCCGCGAATGGT 1570
||||| || ||||||||||||||| |||||| | | | |||||||||||||| |||||||
Sbjct 1702 CCACAGAA-TCCTCATTTCAGCCCATTGTTCGA-GTTCAAAGAAGATATCCGTGAATGGT 1759
Query 1571 CCGCGGTTGGTATGATGGTGACTTTCTATTGTTTATTA-AAGGAAGTCAAAGATCTGCAG 1629
| || |||||||||||||||| |||||| | |||||| || ||||| ||| |||||||
Sbjct 1760 CAGCAGTTGGTATGATGGTGAGTTTCTACGGGTTATTAGAA-GAAGTGAAAAATCTGCAA 1818
Query 1630 CTCGATGATTCCTCAAGCAAACTAAGTAGCCTCAGTAGTTCTTTGGCGGAGCTCGAGAAG 1689
||||||| ||| || ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 1819 CTCGATGTTTCTTCCAGCAAACTAAGTAGCCTCAGTAGTTCTTTTGCCGAGCTAGAGAAG 1878
Query 1690 CACGGTTTCAACGTTACAGATCCATT-GTCACGGATCAGCAAAGTGTTGCCCCTCCAAGA 1748
|| |||||| ||||| || | || | ||||||||| | |||||||||| | |||||||
Sbjct 1879 CATGGTTTCGACGTTGCA-ACCCCTCAGTCACGGATAAACAAAGTGTTGTCTCTCCAAGT 1937
Query 1749 TAAGCGAGCAAAGAAAGCGGAGgaaagaaaatgtcttgagaagaagattgaatg-tgaag 1807
| |||||||||||||| |||||||||||||||||| ||||||| ||||||| | |||||
Sbjct 1938 TGGGCGAGCAAAGAAAGTGGAGGAAAGAAAATGTCTGGAGAAGAGGATTGAA-GCTGAAG 1996
Query 1808 agatcgaaagg-aagaggtttgaagaagagTTTGCTGACTTTGAACGCATAATTATTGAG 1866
|||| |||| | || | |||||| | || | | ||| | ||||| | || | ||| |
Sbjct 1997 AGATTGAAATGCAAAAA-TTTGAACACGAAATGGTTGAGGTAGAACGTA-AACTGTTG-G 2053
Query 1867 AA--GAAGAGACAAGCATTGGTTGCCAAGGAGAAGAAAGAAGCGGCTGA-CAAAAGGATT 1923
|| ||||||||||||| |||||| || |||||||||||| || || | ||| ||||
Sbjct 2054 AACTGAAGAGACAAGCAGAGGTTGCGAAAGAGAAGAAAGAAACGAA-GAACCAAATGATT 2112
Query 1924 GGTGAAATGAAGA-CATGTGCAGAAACCATTGATCAAGAGATCAAAGATGAGGAGCTTGA 1982
| ||||||||| | |||||||||||||||| ||||||||||| ||||| |||||| ||
Sbjct 2113 GTTGAAATGAA-ATCATGTGCAGAAACCATCGATCAAGAGATTGCAGATGTGGAGCTGGA 2171
Query 1983 GTTTCAGA-CAACTGTCTCGACTCCATGGTAA 2013
|||| | | || |||| | | |||| ||||||
Sbjct 2172 GTTT-ATAACATCTGTGTTGGCTCCGTGGTAA 2202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5