BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03300.1 Length=2013 Score E Sequences producing significant alignments: (Bits) Value Ahg311431 jgi|Araly1|311431|fgenesh1_pm.C_scaffold_1000211 1524 0.0 Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1 534 8e-151 > Ahg311431 jgi|Araly1|311431|fgenesh1_pm.C_scaffold_1000211 Length=1950 Score = 1524 bits (825), Expect = 0.0 Identities = 1238/1423 (87%), Gaps = 85/1423 (6%) Strand=Plus/Plus Query 5 CGATTTTCAAAGATTGTGAAGTAGAGATCT-TCTCTGAAGAAGATGGGTTTAGAAACGCT 63 |||||||||||||||||||||| ||||||| | ||| ||||||| ||||||||||||||| Sbjct 11 CGATTTTCAAAGATTGTGAAGTTGAGATCTGT-TCTCAAGAAGAAGGGTTTAGAAACGCT 69 Query 64 TGGTACAGAGCAATTCTGGAGGAAACCCCAACGAATCCGACA-TCGGAAAGCAAAAAGCT 122 |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| Sbjct 70 TGGTACAGAGCAATTCTGGAAGAAACCCCAACGAATCCGA-ATTCGGAAAGCAAAAAGCT 128 Query 123 ACGAT-TTAGTTACATGACGAAGTCGCTCAACAAAGAAGGTTCTTCGTCTCCTCC-AACG 180 || | || ||| || | ||| | ||||||||||||||| | ||||||| || |||| Sbjct 129 TCG-TGTTCGTT--AT-ATGAACTTGCTCAACAAAGAAGG---TGCGTCTCC-CCAAACG 180 Query 181 GTCGAACAGAGGTTCATAAGACCGGTTCCGCCGGAAAACCTTTACAACGGCGTCGTTTTT 240 ||||||||| |||| || |||| || ||||||||||| || ||||||||||||||||| Sbjct 181 GTCGAACAGGGGTTTATCCGACCAGTCCCGCCGGAAAATCTATACAACGGCGTCGTTTTA 240 Query 241 GAGGAAGGAACGATGGTTGATGCTGATTACAAACACA-GATGGAGAACCGGCGTTGTGAT 299 |||||||||||| |||||||||||||||||||||| | ||||| | ||||| |||||||| Sbjct 241 GAGGAAGGAACGGTGGTTGATGCTGATTACAAACA-AGGATGGTGGACCGGTGTTGTGAT 299 Query 300 AAATAAAATGGAGAACGACAGCTATTTGGTTCT-CTTCGATTGTCCACCAGACATTATTC 358 ||| ||||||||| ||| |||||||||||| | |||||||| ||||||||||||||||| Sbjct 300 AAAGAAAATGGAGGACGGGAGCTATTTGGTT-TACTTCGATTTTCCACCAGACATTATTC 358 Query 359 AGTTCGAGACAAAGCATTTGCGAGCACATCTTGACTGGACGGGTTCGGAATGGGTCCAAC 418 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct 359 AGTTCGAGACAAAGCATTTGCGAGCACATCTTGACTGGACCGGTAAGGAATGGGTCCGAC 418 Query 419 CAGAAGTCAGGGAACTGAGTAAGTCCATGTTTAGCCCTGGGACATTAGTTGAAGTAAGTT 478 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 419 CAGAAGTTAGGGAACTGAGTAAGTCCATGTTTAGCCCCGGGACATTAGTTGAAGTAAGTT 478 Query 479 GTGTAATAGATAAAGTTGAAGTTTCCTGGGTTACGGCAATGATAGTTAAGGAGATTGAGG 538 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 479 GTGTAATAGATAAAGTTGAAGTTTCCTGGGTTACTGCAATGATAGTTAAGGAGATTGAGG 538 Query 539 AGAGTGGTGAGAAGAAATTTATAGTGAAGGTATGCAATAAACACTTGAGTTGCCGTGTTG 598 | |||||||||||||||||||||||||||| ||| |||||||||||||| || |||||| Sbjct 539 ATAGTGGTGAGAAGAAATTTATAGTGAAGGCATGGAATAAACACTTGAGATGTAGTGTTG 598 Query 599 ATGAGGCAAAACCAAACATGACGGTTGATTCATGCTGTGTTAGGCCTAGACCGCCTCttt 658 |||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||| | Sbjct 599 ATGAGGCAAAACCAAAAATGACCGTTGATTCACGCTGTGTTAGGCCTACACCGCCTC-CT 657 Query 659 ttttC-GTTGAAGAGTATGACTTGCGTGATTGTGTAGA-G-G-TGTTTCATGGTTCGAGT 714 ||||| ||||||||||||||||||| |||||||||||| | | ||||||||||||| ||| Sbjct 658 TTTTCGGTTGAAGAGTATGACTTGCTTGATTGTGTAGAGGTGTTGTTTCATGGTTCCAGT 717 Query 715 TGGCGTCAAGGGGTGGTGAAGGGAGTTCACATTGAGAAACAGTACACGGTTACTTTAGAG 774 ||||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||| Sbjct 718 TGGCGTCAAGGGGTGGTGATGGGAGTTCTCACTGAGAAACAGTACATGGTTAGGTTAGAG 777 Query 775 GCTACCAAGGATAAGTTGGTCGTGAAACACTCGGATCTTAGGCCTTTTAAGGTGTGGGAA 834 ||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||| Sbjct 778 GCTACAAAGGATGACTTGGAATTGAAACACTCGGATCTTAGGCCTTTTAAGGTGTGGGAA 837 Query 835 GATGGGGTTTGGCATAACGGACCACAGCAGAAACCCGTAAAGGAAAGTCCTTCCAACGCC 894 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | Sbjct 838 GATGGGGTTTGGCATAACGGACCACAGCAAAAACCCGTAAACGAAAGTCCTTCCAACGAC 897 Query 895 ATCAAACAGAAGCCAATGTGCTCTTCTTCTGGTGCTAGGCCAATGACTCCTAAAATGGCT 954 ||||||||||||||||||||||||||| ||||||||||||||||| | || Sbjct 898 ATCAAACAGAAGCCAATGTGCTCTTCTCCTGGTGCTAGGCCAATG-----------G-CT 945 Query 955 ACAAAACATGCGAGAATATCTTTTAACCCTGAGGAAAATGTCGAGGA-ACTCTCTGTAGC 1013 ||||||||| |||||| |||| | || ||||||||||||| |||| | | |||||||||| Sbjct 946 ACAAAACATACGAGAAGATCTCTAAATCCTGAGGAAAATGGCGAG-ACATTCTCTGTAGC 1004 Query 1014 TGAAACTGTTGCTGCCACTGGAAAGTTGGAAAAGATGGGGATTG-CAGAAGAATCTGTTT 1072 ||||||||||||||||||||||||| || | ||| | | ||||||||||||||| Sbjct 1005 TGAAACTGTTGCTGCCACTGGAAAG----AA--G--GGG--TCGGCAGAAGAATCTGTTT 1054 Query 1073 CATGTGTAACACCGTTGAAACAAA-CA--GA-GGCC--AA--CGC-TGAAGGAA-ACAAA 1122 ||| |||||||||||||||||||| | || || || | | ||| | || ||| Sbjct 1055 CATTTGTAACACCGTTGAAACAAAACGCTGAAGGAATGAAATCTCCTGA-G-AAGACA-- 1110 Query 1123 CTTGAGCCGATGCGGAATCAGAATTGCTTGAGAAATGATTCAACTCAACAGATGTTGCCT 1182 |||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 1111 CTTGAGCCGATGAGGAATCAGAATAGCTTGGGAAATGATTCAACTCAACAGAAGTTGCCA 1170 Query 1183 GAGGAGGAGAATAGCAAAGACGGGAGCACAAAAAGGAAGAGAGAAGAAAAACACAACTCA 1242 |||||||||||||||||||| ||||||| ||||||||| ||||||||| | | Sbjct 1171 GAGGAGGAGAATAGCAAAGATGGGAGCAGAAAAAGGAAAAGAGAAGAA---------T-A 1220 Query 1243 GCTTCTTCCGTTATGGATGAAATTGATGGGACTTGTAATGGTTCAGAGTCTGAGATTAGT 1302 | || | | |||||| ||||||||| ||||||| ||||||| ||||||| ||| Sbjct 1221 -C--CT---G--A---ATGAAACTGATGGGACATGTAATGTTTCAGAGGCTGAGATAAGT 1269 Query 1303 AATACAGGTAAAAGTATCTGCAACAATGATGATGTTGATGATCAGCCGCTCTCTACTGAG 1362 |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 1270 GATACAGGTAAAATTATCTGCAACAATGATGATGCTGATGATCAGCCATTCTCTACTGAG 1329 Query 1363 CTA-CCATATTATCAGAGCTTGAGTGTGGTGAACAGTTTTGCT 1404 ||| || | ||||||||||| ||||||||| | ||||||||| Sbjct 1330 CTATCC-TCTTATCAGAGCTCAAGTGTGGTGCATAGTTTTGCT 1371 Score = 721 bits (390), Expect = 0.0 Identities = 516/576 (90%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 1446 TTCTCCTTTTGCAAAGAAGTTACCGTTTTGGAAAAGC-TATGAAACAGATGAATTGTACA 1504 ||||||||||| ||||||||| ||||||||||| | | ||||||||| |||| ||||||| Sbjct 1371 TTCTCCTTTTGAAAAGAAGTTGCCGTTTTGGAAGA-CATATGAAACAAATGAGTTGTACA 1429 Query 1505 AATCATTACCACAAAGTCCTCATTTCAGCCCGTTGTTCAAGGCTAAAGAAGATATCCGCG 1564 ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 1430 AATCAGTACCACAAACTCCTCATTTCAGCCCGTTGCTCAAGGCTAAAGAAGATATTCGCG 1489 Query 1565 AATGGTCCGCGGTTGGTATGATGGTGACTTTCTATTGTTTATTAAAGGAAGTCAAAGATC 1624 ||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| Sbjct 1490 AATGGTCAGCGGTTGGTATGATGGTGACTTTCTATGGTTTATTAGAGGAAGTTAAACATC 1549 Query 1625 TGCAGCTCGATGATTCCTCAAGCAAACTAAGTAGCCTCAG-TAGTTCTTTGGCGGAGCTC 1683 ||||||||||||||||||| |||||||||||| ||||| | ||||||||| ||||||||| Sbjct 1550 TGCAGCTCGATGATTCCTCGAGCAAACTAAGTTGCCTC-GCTAGTTCTTTTGCGGAGCTC 1608 Query 1684 GAGAAGCACGGTTTCAACGTTACAGATCCATTGTCACGGATCAGCAAAGTGTTGCCCCTC 1743 |||||||||||||| ||||| || ||||| ||||||||||| |||| ||||| | || Sbjct 1609 GAGAAGCACGGTTTTGACGTTGCAAATCCACAGTCACGGATCAACAAATTGTTGTCTTTC 1668 Query 1744 CAAGATAAGCGAGCAAAGAAAGCGGAGgaaagaaaatgtcttgagaagaagattgaatg- 1802 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 1669 CAAGATAAGCGAGCAAAGAAAGCAGAGGAAAGAAAATGTCTTGAGAAGAAGATTGAA-GC 1727 Query 1803 tgaagagatcgaaaggaagaggtttgaagaagagTTTGCT-GACTTTGAACGCATAATTA 1861 | |||||||||||||| |||||||||||||||| || | | || |||||||||||||| Sbjct 1728 TAAAGAGATCGAAAGGCAGAGGTTTGAAGAAGAATT-GATTGAGTTTGAACGCATAATGC 1786 Query 1862 TTGAGAAGAAGAGACAAGCATTGGTTGCCAAGGAGAAGAAAGAAGCGGCTGACAAAAGGA 1921 |||| | |||||||||||||||||||||||| ||||||||||||||| | || ||||||| Sbjct 1787 TTGATATGAAGAGACAAGCATTGGTTGCCAAAGAGAAGAAAGAAGCGACGGAAAAAAGGA 1846 Query 1922 TTGGTGAAATGAAGACATGTGCAGAAACCATTGATCAAGAGATCAAAGATGAGGAGCTTG 1981 ||| |||||||||| || ||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1847 TTGTTGAAATGAAGTCACGTGCAGAAACCATTGATCAGGAGATTAAAGATGAGGAGCTTG 1906 Query 1982 AGTTTCAGACAA----CTGTCTCGACTCCATGGTAA 2013 |||||||||||| |||||||| ||||||||||| Sbjct 1907 AGTTTCAGACAAGTAACTGTCTCGGCTCCATGGTAA 1942 > Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1 Length=2303 Score = 534 bits (289), Expect = 8e-151 Identities = 730/932 (78%), Gaps = 74/932 (8%) Strand=Plus/Plus Query 1122 ACTTGAGCCGATGCGGAATCAGAATTGCTT-GAGAAATGA-TTCAACTCAACA-GATGTT 1178 ||||||||| ||| |||||||||| |||| || |||| | |||||||||||| || | | Sbjct 1305 ACTTGAGCCAATGAAGAATCAGAATGGCTTGGA-AAAT-AGTTCAACTCAACACGA-GAT 1361 Query 1179 GCCTGAGGAGGAGAATAGCAAAGACGGGAGCACAAAAAGGAAGAGAGAAGAAAAACACAA 1238 ||||||||||||||||||||| || ||| | ||||||||| |||||| |||| || || Sbjct 1362 GCCTGAGGAGGAGAATAGCAACGAAAAGAGTAGAAAAAGGAAAAGAGAACAAAATCA-AA 1420 Query 1239 CTCAGCTTCTTCCGTTATGGATGAAATTGATGGGACTTGTAATGGTTCAGAGTCTGAGAT 1298 | | || | | || |||||| ||||| |||||| ||||||||| || ||| || Sbjct 1421 ---A-C-TC-T--GACCTGAATGAAACTGATGAGACTTGCAATGGTTCAAAGGCTG-GA- 1470 Query 1299 TAGTAATACAGGTAAAAGT-ATCTGCA-AC--AATGATGATGTTGATGATCAGCCGCTCT 1354 | | | || |||| |||| || | || ||||||||||||||||||||| |||| Sbjct 1471 -A-TCA-AC-GGTACAAGTGAT-AATATACGTGTTGATGATGTTGATGATCAGCCTCTCT 1525 Query 1355 CTAC-T-G--------AGCTAC----C-AT-AT-T-ATCAGAGCTTGAGTGTGGTGAACA 1396 || | | | | |||| | || | | ||||||||| || ||||||||| | Sbjct 1526 CTGCTTGGATAAATATACCTACAGTGCTATCCTCTGATCAGAGCTCGAATGTGGTGAATA 1585 Query 1397 GTTTTGCTGCTGATGCAGAGGAAACTCCAGCAAAGAGTGCACGAACT-ATTTCTCCTTTT 1455 || ||||||||||| |||||||||| ||||||| || ||| || | ||| |||||| Sbjct 1586 ATTCTGCTGCTGATGTTGAGGAAACTCAAGCAAAGGGTACACTAA-TAATTGAGCCTTTT 1644 Query 1456 GCAAAGAAGTTACCGTTTTGGAAAAGC-TATGAAACAGATGAATTG-TACAA-ATCATTA 1512 ||||||| || || |||||||||| | ||||||||||| ||| | ||||| | || || Sbjct 1645 ACAAAGAATTTGCCATTTTGGAAAA-CATATGAAACAGA-GAAGGGATACAAGA-CAGTA 1701 Query 1513 CCACA-AAGTCCTCATTTCAGCCCGTTGTTCAAGGCT-AAAGAAGATATCCGCGAATGGT 1570 ||||| || ||||||||||||||| |||||| | | | |||||||||||||| ||||||| Sbjct 1702 CCACAGAA-TCCTCATTTCAGCCCATTGTTCGA-GTTCAAAGAAGATATCCGTGAATGGT 1759 Query 1571 CCGCGGTTGGTATGATGGTGACTTTCTATTGTTTATTA-AAGGAAGTCAAAGATCTGCAG 1629 | || |||||||||||||||| |||||| | |||||| || ||||| ||| ||||||| Sbjct 1760 CAGCAGTTGGTATGATGGTGAGTTTCTACGGGTTATTAGAA-GAAGTGAAAAATCTGCAA 1818 Query 1630 CTCGATGATTCCTCAAGCAAACTAAGTAGCCTCAGTAGTTCTTTGGCGGAGCTCGAGAAG 1689 ||||||| ||| || ||||||||||||||||||||||||||||| || ||||| |||||| Sbjct 1819 CTCGATGTTTCTTCCAGCAAACTAAGTAGCCTCAGTAGTTCTTTTGCCGAGCTAGAGAAG 1878 Query 1690 CACGGTTTCAACGTTACAGATCCATT-GTCACGGATCAGCAAAGTGTTGCCCCTCCAAGA 1748 || |||||| ||||| || | || | ||||||||| | |||||||||| | ||||||| Sbjct 1879 CATGGTTTCGACGTTGCA-ACCCCTCAGTCACGGATAAACAAAGTGTTGTCTCTCCAAGT 1937 Query 1749 TAAGCGAGCAAAGAAAGCGGAGgaaagaaaatgtcttgagaagaagattgaatg-tgaag 1807 | |||||||||||||| |||||||||||||||||| ||||||| ||||||| | ||||| Sbjct 1938 TGGGCGAGCAAAGAAAGTGGAGGAAAGAAAATGTCTGGAGAAGAGGATTGAA-GCTGAAG 1996 Query 1808 agatcgaaagg-aagaggtttgaagaagagTTTGCTGACTTTGAACGCATAATTATTGAG 1866 |||| |||| | || | |||||| | || | | ||| | ||||| | || | ||| | Sbjct 1997 AGATTGAAATGCAAAAA-TTTGAACACGAAATGGTTGAGGTAGAACGTA-AACTGTTG-G 2053 Query 1867 AA--GAAGAGACAAGCATTGGTTGCCAAGGAGAAGAAAGAAGCGGCTGA-CAAAAGGATT 1923 || ||||||||||||| |||||| || |||||||||||| || || | ||| |||| Sbjct 2054 AACTGAAGAGACAAGCAGAGGTTGCGAAAGAGAAGAAAGAAACGAA-GAACCAAATGATT 2112 Query 1924 GGTGAAATGAAGA-CATGTGCAGAAACCATTGATCAAGAGATCAAAGATGAGGAGCTTGA 1982 | ||||||||| | |||||||||||||||| ||||||||||| ||||| |||||| || Sbjct 2113 GTTGAAATGAA-ATCATGTGCAGAAACCATCGATCAAGAGATTGCAGATGTGGAGCTGGA 2171 Query 1983 GTTTCAGA-CAACTGTCTCGACTCCATGGTAA 2013 |||| | | || |||| | | |||| |||||| Sbjct 2172 GTTT-ATAACATCTGTGTTGGCTCCGTGGTAA 2202 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75685316815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5