BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03310.2
Length=2940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470308 jgi|Araly1|470308|fgenesh2_kg.1__262__AT1G03310.2 4167 0.0
> Ahg470308 jgi|Araly1|470308|fgenesh2_kg.1__262__AT1G03310.2
Length=2768
Score = 4167 bits (2256), Expect = 0.0
Identities = 2573/2728 (94%), Gaps = 13/2728 (0%)
Strand=Plus/Plus
Query 217 GGCATCACTAGAACATGGAAGTTTCCTTCTGCAAGGCTTTTTACTGGTAGGAAGAACAAG 276
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 50 GGCATCACTAGAACATGGAAGTTTCCTGCTGCAAGGTTTTTTACTGGT---AAGAACAAG 106
Query 277 ATTAAACTTGGATCCGAGACACTAATGTTTACACGAAAACGTTTCATGGGTGATTTGGTT 336
|||||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||
Sbjct 107 ATTAAACTTGGATCTGAGACACTGATATTTACAAGAAAACGTTTCATGGGGGATTTGGTT 166
Query 337 ACAAGCGCGTTGCAAAGTTATCAGTTTAGTAAGATATGTGCTTCAAAGACTTCCATCGAG 396
|| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 167 ACTAGCGCGTTACAAAGTTATCAGTTGGGTAAGATATGTGCTTCGAAGACTTCCATCGAG 226
Query 397 CTGAGAGAGGCATTGTCTAGTAGAAGAGCTGAGGCTGATGACCTGAAGAAGGTAACATCA 456
||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 227 CTGAGGGAGGCATTGTCTACTAGAAGAGCTCAGGTTGATGACCTGAAGAAGGTAACATCA 286
Query 457 TATTCATTCAGGACAAAAGCAGGTGCTCTGGTTAAAGTCAAAGTTGAAAAGAAGAGAGAA 516
|||||||||||||||||| | |||||||| |||||||| | |||||||||||||||||||
Sbjct 287 TATTCATTCAGGACAAAATCTGGTGCTCTTGTTAAAGTTAGAGTTGAAAAGAAGAGAGAA 346
Query 517 AAGTACAGCATTTTGGTTTATGTCTCATCTTTGGAACTTAGTGGTGATGACAAGAGTAGG 576
|||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 347 AAGTACAGCATTATGGTTTATGTCTCATCTTTGGAACTAAGTGGTGATGGCAAGAGTAGA 406
Query 577 CTGGTGATGGTTTGGGGTGTCTACAGGTCTGATTCTTCGTGTTTTTTGCCTCTGGATTTC 636
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 407 CTGGTGATGGTTTGGGGTGTCTACAGGTCTGATTCTTCGTGTTTCTTGCCTCTGGATTTC 466
Query 637 GAAAACTCTTCCCAAGACTCACAAACCCACACAACAGAAACTACATTTGTGAAAAGCTCC 696
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 467 GAAAACTCTTCCCAAGACTCACAAACCCACACAACAGAAACTCCATTTGTGAAAAGCTCC 526
Query 697 TTGTCTGAGTTAATGCTAGGGCTAGAATTTGATGGGAAAGAATCTCCTTTCTACTTATCA 756
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 527 TTCTCTGAGTTAATGCTAGGGCTCGAATTTGATGGGAAAGAATCTCCTTTCTACCTATCA 586
Query 757 TTTCACCTGAAGTTAGTGTCAGGTAGAGATCCGGACGGTCAAGAAATGCTGACTCACAGG 816
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 587 TTTCACCTGAAGTTAGTGTCAGGAAGAGATCCGGACGGTCAAGAAATGCTGACACACAGA 646
Query 817 GACACTGACTTCTGTATCCCGGTTGGTTTTACTGCTGGTCATCCATTGCCGCTAGGCCTT 876
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 647 GACACTGACTTCTGTATCCCGGTTGGTTTTACTGCTGGTCATCCATTGCCGTTAGGCCTT 706
Query 877 TCTTCCGGGCCAGATGATGATTCTTGGAATTTTTCGTTCTTTTCAAGAAGCTCAACGAAC 936
||||| |||||||||||||| |||||||||||| | ||||||||||||| ||||||||||
Sbjct 707 TCTTCTGGGCCAGATGATGACTCTTGGAATTTTGCCTTCTTTTCAAGAAACTCAACGAAC 766
Query 937 GTGGTTTTATGCTTGTATGATGATAGCACAACAGATAAACCTGCTTTAGAACTTGATCTT 996
||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||
Sbjct 767 GTGGTTTTATGCTTGTATGATGATACCACAACCGATAAACCTGCTTTAGAGCTTGATCTT 826
Query 997 GATCCTTATGTCAACCGAACAGGTGATGTTTGGCATGCTTCAGTTGACAATACATGGGAT 1056
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 827 GATCCTTATGTCAACCGAACAGGTGATGTTTGGCATGCTTCAATTGACAATACATGGGAT 886
Query 1057 TTTGTGAGATATGGCTACCGTTGCAAGGAGACAGCTCACTCTAAAGAAGATGTCGATGTT 1116
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 887 TTTGTGAGATATGGCTACCGTTGCAAGGAGACGGCTCACTCGGAAGAAGACGTCGATGTT 946
Query 1117 GAAGGTGAGCCAATTGTCTTGGATCCATATGCCACAGTCGTTGGTAAATCTGTCTCTCAG 1176
|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 947 GAAGCTGAGCCAATTGTTTTGGATCCATATGCCACAGTCATTGGTAAATCTGTCTCTCAG 1006
Query 1177 AAATATCTTGGAAGTTTATC-TAAGAGTCCTTCTTTTGATTGGGGAGAAGATGTGTCTCC 1235
|||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1007 AAATTTCTTGGAAGTTTA-CTTAAGAACCCTTCTTTTGATTGGGGAGAAGATGTGTCTCC 1065
Query 1236 GAACATACCTCTGGAGAAACTTCTTGTTTACCGGTTGAATGTGAAGGGTTTTACACAACA 1295
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1066 GAATATACCTCTGGAGAAACTTATTGTTTACCGGTTGAATGTGAAGGGTTTTACACAACA 1125
Query 1296 CAGATCCAGCAAGTTGCCTAGTAACGTAGCAGGGACATTTTCTGGTGTAGCTGAGAAAGT 1355
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1126 CAAATCCAGCAAGTTGCCTAGTAACGTAGCAGGGACTTTTTCTGGTGTAGATGAGAAAGT 1185
Query 1356 TAGCCATTTGAAAACCCTTGGAACCAACGCTGTTCTTTTGGAGCCAATATTCTCATTCTC 1415
||||||| |||||||||||||| ||||| |||||| |||||||||||||| || |||||
Sbjct 1186 TAGCCATCTGAAAACCCTTGGAGTCAACGGTGTTCTCTTGGAGCCAATATTTTCGTTCTC 1245
Query 1416 CGAGCAAAAAGGTCCTTATTTTCCATTTCATTTCTTTTCACCAATGGACATATATGGACC 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CGAGCAAAAAGGTCCTTATTTTCCATTTCATTTCTTTTCACCAATGGACATATATGGACC 1305
Query 1476 TTCCAATAGCCTTGAATCCGCAGTTAACTCAATGAAAGTGATGGTGAAGAAATTGCACAG 1535
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1306 TTCCAATAGCCTTGAATCCGCGGTTAACTCAATGAAAGAGATGGTGAAGAAATTGCACAG 1365
Query 1536 TGAGGGAATAGAGGTACTTTTGGAAGTAGTTTTTACACATACTGCTGATTCTGGAGCTCT 1595
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1366 TCAGGGAATAGAGGTACTTTTGGAAGTAGTTTTTACACATACCACTGATTCTGGAGCTCT 1425
Query 1596 TCGTGGAATTGATGACAGTTCCTATTACTACAAGGGAAGAGCCAATGATCTAGATTCTAA 1655
|| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||| |||
Sbjct 1426 TCATGGAATTGATGACAGTTGCTATTATTACAAGGGAAGGGCCAATGATCTAGATTATAA 1485
Query 1656 AAGTTACTTGAACTGTAACTATCCTGTTGTTCAGCAGTTGGTATTGGAGAGCTTGCGTTA 1715
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1486 AAGTTACTTGAACTGTAACTATCCTGTTGTTCAGCAGTTGATTTTGGAGAGCTTGCGTTA 1545
Query 1716 TTGGGTAACCGAGTTTCATGTAGATGGATTTTGTTTTATAAATGCTTCATCTCTCTTGAG 1775
|||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1546 TTGGGTTACCGAGTTTCATGTAGATGGTTTTTGTTTCATAAATGCTTCGTCTCTCTTGAG 1605
Query 1776 AGGCGTTCACGGTGAACAGCTCTCTCGTCCTCCTTTGGTTGAAGCAATAGCTTTTGATCC 1835
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 1606 AGGCGTTCACGGTGAACAGCTCTCTCGTCCTCCCTTGGTTGAAGCAATAACTTTCGATCC 1665
Query 1836 ACTTCTTGCGGAGACCAAACTAATAGCTGATTGCTGGGATCCACTTGAAATGATGCCAAA 1895
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1666 ACTTCTTGCGGAAACCAAACTAATTGCTGATTGTTGGGATCCACTTGAAATGATGCCAAA 1725
Query 1896 AGAAGTACGGTTCCCACATTGGAAGCGATGGGCAGAACTCAACACAAGATATTGTCGAAA 1955
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 AGAAGTACGGTTCCCGCATTGGAAGCGATGGGCAGAACTCAACACAAGATATTGTCGAAA 1785
Query 1956 TGTAAGAAATTTTTTAAGGGGAAGAGGCGTTCTTAGTGATCTGGCTACAAGAATTTGTGG 2015
|||| |||||||| | ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1786 TGTACGAAATTTTCTGAGGGGAAGAGGCGTTCTAAGCGATCTGGCTACAAGAATTTGTGG 1845
Query 2016 AAGTGGTGACGTATTTACCGATGGAAGAGGTCCGGCCTTCTCCTTCAACTACATTTCAAG 2075
|||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1846 AAGTGGTGACATATTTACCGATGGAAGAGGTCCTGCTTTCTCCTTTAACTACATTTCAAG 1905
Query 2076 AAACTCAGGACTCTCGCTTGTTGACATAGTCAGTTTCAGTGGCCCTGAGCTAGCTTCAGA 2135
||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 1906 AAACTCAGGACTCTCTCTTGTTGACTTAGTCAGTTTCAGTAACCCTGAGATAGCTTCAGA 1965
Query 2136 GCTAAGTTGGAATTGTGGGGAAGAAGGAGCAACGAATAAATCAGCTGTTCTTCAAAGAAG 2195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 GCTAAGTTGGAATTGTGGGGAAGAAGGAGCAACGAATAAATCAGCTGTTCTTCAAAGAAG 2025
Query 2196 GCTAAAACAAATCCGCAATTTCTTGTTTATACAGTACATATCACTTGGAGTTCCAGTGCT 2255
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2026 GCTAAAACAAATCCGCAACTTCTTGTTTATACAGTACATATCACTCGGAATTCCAGTGCT 2085
Query 2256 TAATATGGGAGATGAATGTGGAATCTCGACAAGGGGCTCGCCTTTGTTGGAATCACGGAA 2315
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2086 TAACATGGGAGATGAATGTGGAATCTCGACAAAGGGCTCGCCTTTGTTGGAATCACGGAA 2145
Query 2316 ACCTTTTGATTGGAACTTGCTAGCTTCGGCTTTCGGTACACAGATCACGCAATTTATCTC 2375
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2146 ACCTTTTGATTGGAACTTGCTAGCTTCGGCTTTCGGCACACAGATCACGCAATTCATCTC 2205
Query 2376 CTTCATGACTTCAGTAAGAGCAAGAAGAAGTGATGTGTTTCAAAGGAGAGACTTTTTGAA 2435
|||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||
Sbjct 2206 CTTCATGACTTCAGTAAGAGAAAGAAGAAGCGATGTGTTTCAGAGGAGAAACTTTTTGAA 2265
Query 2436 ACCTGAAAATATTGTTTGGTATGCAAATGACCAAACAACTCCAAAGTGGGAAGATCCTGC 2495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2266 ACCTGAAAATATTGTTTGGTATGCAAATGACCAAACAACTCCAAAGTGGGAAGATCCTAC 2325
Query 2496 TTCTAAGTTTTTGGCATTGGAGATCAAATCAGAGTCAGAGGAAGAGGAAACTGCGTCATT 2555
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2326 TTCTAAGTTTTTGGCATTGGAGATCAAATCAGAGTCAGAGGAAGAGGAAACTGCATCACT 2385
Query 2556 GGCTGAGCCAAATGAGCCAAAGAGCAATGATCTGTTCATCGGATTCAATGCGAGTGATCA 2615
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2386 GGTTGAGCCAACTGAGCCAAAGAGCAATGATCTGTTCATCGGATTCAATGCAAGTGATCA 2445
Query 2616 TCCTGAGAGTGTAGTCTTACCTTCACTTCCCGATGGAAGCAAATGGAGAAGATTGGTCGA 2675
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2446 TCCGGAGAGTGTAATCTTACCTTCACTTCCCGATGGAAGCAAATGGAGACGATTGGTCGA 2505
Query 2676 CACAGCTCTTCCTTTCCCGGGGTTTTTCTCTGTCGAAGGAGAAACCGTTGT---AGCAGA 2732
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2506 CACAGCTCTTCCTTTCCCGGGGTTTTTCTCTGTCGAAGGAGAGACCGTTGTTGTAGCAGA 2565
Query 2733 AGAACCGTTGCAGCAACTGGTTGTGTATGAGATGAAGCCGTACAGTTGTACCCTTTTTGA 2792
||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2566 AGAACAGCTACAGCAACTGATTGTGTATGAGATGAAGCCGTACAGTTGTACCCTTTTTGA 2625
Query 2793 AACCATCAATACTACCGCTTAGAACTCAAGTTATGATCTTTGTATATGTTACTGTTTTGT 2852
|||||||| | |||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2626 AACCATCAGTTCTACTGCTTAGAACTCAAGTTATGATCTTTGTATATGTTATTGTGTTGT 2685
Query 2853 TACATTTCCAGTAAGAATATATTCAGTTAAATCAATGATTTCCACAATATCTtatatata 2912
| ||||||| ||||||||| | || |||||||||||| ||||||||||||| |||||
Sbjct 2686 CATATTTCCAATAAGAATAT-T-CAATTAAATCAATGACTTCCACAATATCTGATATAGC 2743
Query 2913 tataACATCACTTAAGCCTTTTGCTTGT 2940
| | |||||||| |||||||||||||
Sbjct 2744 -A-A-CATCACTTGTGCCTTTTGCTTGT 2768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110994973930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5