BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03320.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470310 jgi|Araly1|470310|fgenesh2_kg.1__264__AT1G03320.1 664 0.0
> Ahg470310 jgi|Araly1|470310|fgenesh2_kg.1__264__AT1G03320.1
Length=642
Score = 664 bits (359), Expect = 0.0
Identities = 572/666 (86%), Gaps = 49/666 (7%)
Strand=Plus/Plus
Query 1 ATGAACGATGGTTGCTGCTCAAAGTGTCAGGTTAAAGCAACGAAGAAGAAGAAATCGAAG 60
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGAACGACGGTTGCTGCTCAAAGTGTCAGGTTAAAGCAATAAAGAAGAAGAACTCGAAG 60
Query 61 AAAAACGAAGATGAGCCT-GATGAAGAGGATGTGAAACAAAAACAGAAAGTTTCAAAGAA 119
|||| |||||| ||| || | |||||||||||||||| ||||||||||||||||| |||
Sbjct 61 AAAACCGAAGAAGAGTCTCG-TGAAGAGGATGTGAAAGAAAAACAGAAAGTTTCAGAGAG 119
Query 120 TGAGAATCCGAAAAAAGATTCCAATGGGGAGAAAGG-----AT-------CAGATGAGAA 167
|||||||||||||||||||||||||| ||| ||||| || ||||| ||||
Sbjct 120 TGAGAATCCGAAAAAAGATTCCAATGAGGAAAAAGGATCACATGAAAAAACAGATCAGAA 179
Query 168 GGATAAGAAGAATAAGAACGTCCTCAGATGGCCACAAGACTCAAGTACAAAGAAAGAGAA 227
|||||||||||| |||| | |||||| |||| ||| ||||||||||||||||||||||
Sbjct 180 GGATAAGAAGAAGAAGAGCATCCTCACATGG---CAACACTCAAGTACAAAGAAAGAGAA 236
Query 228 GGGTGATGGTAAAAACTTGTCAAGCGAGGAAAATGGTGGTAAAAACTTGCCAAGCGAGAA 287
|| || ||||||||| | | ||| | | ||| | ||| |||||
Sbjct 237 GGATGTTGGTAAAAA---G---A---AGG--ACT--TGG--------T---AAGTGAGAA 272
Query 288 AAATGGTGTGAACCCGCCGCCGCCTTGTTACACCGCTCAACCGATGATGTACCATGGTGG 347
||||| ||| || | |||||| |||||||||||| || ||||||| |||||||||||
Sbjct 273 AAATGATGTTAA--C-CCGCCG---TGTTACACCGCTAAATCGATGATCTACCATGGTGG 326
Query 348 ACACAATCCTTTACACCGGTGGCCCATATCCGCAGCCTCGAGAAGCCATTATCCCCCGTT 407
|| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 327 ACCCAATCCTTTAAACCGGTGGCCCATATCCGCAGCCCCTAGAAGCCATTATCCCCCATT 386
Query 408 TTCGATGGGGGCAATGCATGGACCATATGGTGGTTGTGGACCTTGTGGTGGTCCAATTGA 467
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 387 TTCGATGGGAGCGATGTATGGACCATATGGTGGTTGTGGACCTTGTGGTGGTCCAATTTA 446
Query 468 TCCATACCAATCCATGCCTCGACCCAGAATGTTCGATGGTGTTCACATTTCACAATATCC 527
|||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||
Sbjct 447 TCCATACCAATCCATGCCTCGAGCCACAATGTTCAATGGTGTTCACATTTCACCATATCC 506
Query 528 GCCTATGGCTGCAGCATATCCGTA-TATGGCTGCAGCTGGTCCTTTCCCCTATTGGCAAA 586
||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 507 GCCTATGGCTGCAGCATATCC-TCCTATGGCTGCAGCTGGTCCTTTTCCCTATTGGCAAA 565
Query 587 CCAGACCGTACATGGATGCAAATCCTATGAAGCGTTACACTACCTATGCAGAAAATTACT 646
||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 566 CCAGACCGTACATGGATACAAATCCTATGAAGCGTTACACTAGCTATGCAGACAATTACT 625
Query 647 CCTATT 652
||||||
Sbjct 626 CCTATT 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5