BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03330.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470311 jgi|Araly1|470311|fgenesh2_kg.1__265__AT1G03330.1 854 0.0
> Ahg470311 jgi|Araly1|470311|fgenesh2_kg.1__265__AT1G03330.1
Length=650
Score = 854 bits (462), Expect = 0.0
Identities = 605/669 (90%), Gaps = 29/669 (4%)
Strand=Plus/Plus
Query 1 CTGGTGACCAAAACACACTTTGAGTTTTTAAATATTTACCCTTTGAGG--C-----ACTT 53
|||||||||||||||||| |||| |||||||||||||| ||||||| | | ||
Sbjct 1 CTGGTGACCAAAACACAC-ATGAGGTTTTAAATATTTACTTTTTGAGGCCCTTATTAGTT 59
Query 54 ATTACTTAAATTACCAAGAACATACCCAATCTTTTCAATAATTACATAAATATACCTTTG 113
||||||| ||||| |||||||| |||||||||||| ||||||||||||| || | ||||
Sbjct 60 ATTACTTGAATTAGCAAGAACAGACCCAATCTTTTGAATAATTACATAAGTAAAGCTTTT 119
Query 114 GTTTCTTATATTCTCGAAATTA-ACCCAAAGATCATTAGGGTACATACATTCTTTACTCG 172
|||| ||||| | || |||||| ||||||||||||||||| || ||||||
Sbjct 120 GTTTGTTATA-T-TCAAAATTAGCCCCAAAGATCATTAGGG---------TC--TACTCG 166
Query 173 AGAGAGAGAAGTTCTAAAGTCCTCAAATCCCGCAAAGCTTTTTCAGCTTCTTTGTTGAAT 232
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 167 ACATAGAGAAGTTCTAAAGTCCTCAAATCCCGCAAATCTTTTTCAGCTTCTTTGTTGAAT 226
Query 233 TGCGAGCAGAGGTAGAAATCAGCAG-GAAACAAAAATGTTGTTCTTTTCTTACTTCAAGG 291
||| | ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 227 TGC--G-AGAGGAAGAAATCAGCAGAGAAA-AAAAATGTTGTTCTTCTCTTACTTCAAGG 282
Query 292 ATTTGGTTGGACAAGAAGTGACGGTTGAGCTGAAGAATGATTTAGCCATAAGAGGAACTC 351
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 283 ATTTGGTTGGACAAGAAGTGACGGTTGAGCTGAAGAACGATTTAGCCATAAGAGGAACTC 342
Query 352 TTCACTCAGTTGATCAGTATCTGAATATCAAGCTCGAGAACACTAGGGTTGTTGACCAGG 411
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TTCACTCCGTTGATCAGTATCTGAATATCAAGCTCGAGAACACTAGGGTTGTTGACCAGG 402
Query 412 ACAAGTACCCTCACATGCTTTCAGTGAGAAACTGTTTCATCAGAGGATCTGTGGTAAGGT 471
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 403 ACAAATACCCTCACATGCTTTCAGTGAGAAATTGTTTCATCAGAGGATCAGTGGTAAGGT 462
Query 472 ACGTGCAGTTACCTAAAGATGGAGTCGATGTTGATTTGCTTCACGACGCAGCTAGAAGAG 531
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 463 ACGTGCAGTTACCTAAAGATGGAGTCGATGTTGATTTGCTTCACGATGCCGCTAGGAGAG 522
Query 532 AAGCTAGGGGTGGCTGATTCTGAAATA-TCTTTGTATCTCCAAAACTTGAATACTTTTCA 590
||||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 523 AAGCTAGGGGTGGCTGATTCTGAAA-AGTCGTTGTATCTCCAAAACTTAAATACTTTTCA 581
Query 591 TTCGGCGTAATGGCTTTATAATGAATATTTCCCTGATGTAGAGCCAATGGTATGGCCATG 650
|| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 582 TTTGGCGTAATGGCTTGATAATGAATATTTCCCTGATGTAGAGCCTATGTTATGGCCATG 641
Query 651 AATCTTGTT 659
|||||||||
Sbjct 642 AATCTTGTT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5