BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03340.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919001 jgi|Araly1|919001|scaffold_100282.1 1120 0.0
> Ahg919001 jgi|Araly1|919001|scaffold_100282.1
Length=1245
Score = 1120 bits (606), Expect = 0.0
Identities = 706/753 (94%), Gaps = 12/753 (2%)
Strand=Plus/Plus
Query 488 TGCAAAGCCG-TTATTGGATCTCATGGTGGATGCTAACATTCTGTTCTCAAGTAGCAGAG 546
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 494 TGCAAAGCCGCTT-TTGGATCTCATGGTGGATGGTAACATTCTGTTCTCAAGTAGCAGAG 552
Query 547 CTGAATTGAATGATTTGGTCTCTACGGCAGCTGAGTTTCATAGATTAAGGAACTCAACAA 606
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 553 CTGAATTTAATGATTTGGTCTCTACGGCAGCTGAGTTTCATAGGTTAAGGAACTCAACAA 612
Query 607 GATGGAGAAAGCTCTCACGGCTTGTCCCGCAGTTTCAGCGATTCGACAGTGAAGTACCAA 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 613 GATGGAGAAAGCTCTCACGGCTTGTCCCGCAGTTTCAGCGATTCGACAGTGAAGCACTAA 672
Query 667 TAGACACTCTGCAGCTA-CC-C-G---AG---GACGCAGTTACACTAGCTCCTCCAAAGA 717
|||||||| |||||||| || | | || || ||||||||||| ||||||| ||||
Sbjct 673 TAGACACTTTGCAGCTATCCGCGGTTAAGCCTGATGCAGTTACACTTGCTCCTCTTAAGA 732
Query 718 GTCCGAAGAAAACCAGGCTCAAGCCTTCACCAAAGAAACAAAATCCGAAGATAAGAGATA 777
|| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GTGAGAAGAAAACTAGGCTTAAGCCTTCACCAAAGAAACAAAATCCGAAGATAAGAGATA 792
Query 778 AGGAATATGACCTCTACGAACGAAACCGTCTTCATGCGTGTGAGAGCCTTCTCTCTCTGA 837
||||| | |||||||||||| |||||||||||||||| | |||||||||| |||||||||
Sbjct 793 AGGAAAAGGACCTCTACGAAAGAAACCGTCTTCATGCATTTGAGAGCCTTATCTCTCTGA 852
Query 838 TGATAGGCAATGAACAACATAGAAAAACCACAATGCTATCTCTAAAGAAATCACGTGGAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 853 TGATAGGCAATGAACAACATAGAAAAACCACAATGCTATCTCTAAAGAAATCACGGGGAG 912
Query 898 AACTCTTCGAGCTTTTGACTCAGTGTTCAATTGGCTTTGCTGGCACTGGTATGGCTGTGC 957
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 913 AACTCTTAGAGCTTTTGACTCAGTGTTCAATTGGCTTTGCTGGAACTGGTATGGCTGTGC 972
Query 958 TCTTCTTTCTCGTTTGTAATGTTGCTTCCAGGCAGGTACCCTTTTGCGCAAACCAATTCT 1017
|||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 973 TCTTCTTTCTGGTTTGTGATGTTGCTTCCAGGCAGGTACCCTTTTGCGCAAACAAATTCT 1032
Query 1018 TCGAGGGTGCAATGAGTTTGAGTTTGGTATTGCTCTCGTGGTCTGTGAGTAGACTCAGGG 1077
|||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1033 TCGAAGGTGCACTGAGTTTGAGTTTGGTATTGCTCTCGTGGTCGGTGAGTAGACTCAGGG 1092
Query 1078 AAGCCCTTGTTAATTTCAATAGGAAAACAATCAACGAAGAAGAAGTCTCAAATAAAGTGG 1137
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1093 AAGCCCTTGTTAATTTTAATAGGAAAACAATCAACGAAGAAGAAATCTCAAATAAAGTGG 1152
Query 1138 AAAGAAGAATCAAAGAAGTTTACTTCAGAGCTGCCACAGTTATTGCCATGGTTGCACTTA 1197
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1153 AAAGAAGAATCAAGGAAGTTTACTTCAGAGCTGCCACAGTAATTGCCTTGGTTGCACTTA 1212
Query 1198 GGTTTGGTTGAAT-GTTGGAATGCTGATGATTT 1229
||||||||||||| |||| ||||||||||||||
Sbjct 1213 GGTTTGGTTGAATTGTTGAAATGCTGATGATTT 1245
Score = 658 bits (356), Expect = 0.0
Identities = 429/463 (93%), Gaps = 9/463 (2%)
Strand=Plus/Plus
Query 31 AAGAAGTCA-GTTTTTTCTCAATGGCTTCTCATAGCTATTCAACACTTAGGTTTAGTCTC 89
|||||| || | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4 AAGAAGCCACG-TTTTTCTCAATGGCTTCTCATAGCTATTCAACACTTGGGTTTAGTCTC 62
Query 90 CTTCAAGAGCTAAGAAGCAACGAGATCATCAAGACA-AGCCGGGCTTATCTGGTGAATCC 148
|||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct 63 CTTCAAGAGCTAGGAAGCAACGAAATCATCAAGA-AGAGCCGGGCTTATCTGGTGAATCC 121
Query 149 TGGAGGAAGAAAATATGAGATATTACCGGAGAGCTCCTTTAACCTGAAATCACAACTCTT 208
||||||||||||| |||| |||||||| || |||||||||||||||||| ||||||||||
Sbjct 122 TGGAGGAAGAAAACATGACATATTACCAGAAAGCTCCTTTAACCTGAAACCACAACTCTT 181
Query 209 GGAGCCATTGAAACCTTTTTCTTCTTTTAGTAAGTCTAACCACTTTTTGGAGTTTGATTC 268
|||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 182 GGAGCCATTGAAACATTTTTCTTCTTCGAGTAAGTCTAACCACTTTGTGGAGTTTGATTC 241
Query 269 AACCATGATGAAGCATAGACTCATGGATGTTCATGAAACTGGACCAGACCCTGTGTGTTT 328
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AACCATGATGAAGCATAGGCTCATGGATGTTCATGAAACTGGACCAGACCCTGTGTGTTT 301
Query 329 AAGCTTGGGGATCACTCAGCAGTATGCAAGA-AAAGAGGAGGTGTTAGAGTTCCTTTTGT 387
|||||||||||||||| |||||||||||| | ||| || |||||||||||||||||||||
Sbjct 302 AAGCTTGGGGATCACTGAGCAGTATGCAA-ATAAACAGAAGGTGTTAGAGTTCCTTTTGT 360
Query 388 CTAGATCAGAAGAAGAACTCAAAGAAGAAGGATTCGATTTGTCTCTCCTATCTGAATTGA 447
|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 361 CTAGATCAGAAGAA---CTCAAAGAAGGAGGATTCGATTTGTCTCTGCTATCTGAATTGA 417
Query 448 TGGGTCTAGATGCTTTAAGATCAAGTTCTCAGCAACCATATGC 490
||||||| || ||||| ||||||||||||||| ||||| |||
Sbjct 418 TGGGTCTGGAGGCTTTGGGATCAAGTTCTCAGCTACCATTTGC 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5