BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03350.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470313 jgi|Araly1|470313|fgenesh2_kg.1__267__AT1G03350.1 1635 0.0
> Ahg470313 jgi|Araly1|470313|fgenesh2_kg.1__267__AT1G03350.1
Length=1482
Score = 1635 bits (885), Expect = 0.0
Identities = 1071/1156 (93%), Gaps = 32/1156 (3%)
Strand=Plus/Plus
Query 148 ATGAATTTCTTCAAATCCGTCTTCACGGAAGACCTAGATCCTCCAGAAACCGAATCCGAA 207
|||||||||||||||||||||||| | || |||||||||||| ||| |||||||||||||
Sbjct 1 ATGAATTTCTTCAAATCCGTCTTCTCCGACGACCTAGATCCTTCAGGAACCGAATCCGAA 60
Query 208 TCCGATTCACCGAAACACAGCGAAGAGCATGAACATCCAGAGCAAGAACATCCAGAGCAA 267
|||||||||||||||||||||| | || | | || ||| | ||||||||||||
Sbjct 61 TCCGATTCACCGAAACACAGCG-A-AG-A-G--CA---AGA-C-----CATCCAGAGCAA 105
Query 268 TCTGAATCTAACGACGACGGTGGATGGAGCTTCGGTGGTCTGATGAAAACTCTAGCCACC 327
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 106 TCTGACCCTAACGACGACGGTGGATGGAGCTTCGGTGGTCTGATGAAAACTATAGCCACC 165
Query 328 AGATCCGAATCCGTGATTGAAACCTACCGACGAGATCTCGAAGAATTTGGCACAGGTTTG 387
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 166 AGATCCGAATCCGTGATTGAAACCTACCGACGAGATCTCGAAGAATTTGGTACTGGTTTG 225
Query 388 AAGAAAGAGATCGAGGTGGCTCAGGGATCGCTTGGTACGGTGGGACATGCGATTGATGAG 447
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 226 AAGAAGGAGATCGAAGTGGCTCAGGGATCGCTTGGTACTGTGGGACACGCGATTGATGAG 285
Query 448 CTTGGGAACACGGTGCTAAAAGGTACGGCTGAGATTATTGCTCAAGGTAAGGAAGCGATT 507
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 286 CTTGGGAACACGGTGCTAAAAGGTACGGCTGAGATCATTGCTCAAGGTAAGGAAGCGATT 345
Query 508 TTAGCCGCTGGTAATGAATCTGATTCTTCTGATAACAATAGTAGTCAGAGTTTTGGTCGT 567
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 346 TTAGCTGCTGGTAATGAATCTGATTCTTCTGATAATAATAGTAGTCAGAGTTTTGGTCGT 405
Query 568 CGTGATAGCTTCAGTTCGAAACCATATAGTCGTTTCGATGCTCAGATTCGTGCTGTTCAA 627
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 406 CGTGATAGCTTCAGTTCGAAACCCTATAGTCGCTTCGATGCTCAGATTCGTGCTGTTCAA 465
Query 628 GGAGATCTCAACACTTACTGTGAAGAGCCTGAGGATTCAGATGATTACAAAAAGTGGGAA 687
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 466 GGCGATCTCAACACTTACTGTGAAGAGCCTGAGGATTCTGATGATTACCAAAAGTGGGAA 525
Query 688 TCTGCGTTTTCTCTGGATGGAAAAGCTGAGGAGATGGAGAAATTGTTGGAGGAAAATGGT 747
|||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 526 TCTGGGGTTTCTCTGGATGAAAAAGCTGAGGAGATGGAGAAATTGTTGGAGGAGAATGGT 585
Query 748 GATATGAAAGGAGTGTATAAAAGGGTCGTTCCGAGTATGGTTGATCACGAGACCTTCTGG 807
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 586 GATATGAAAGGAGTGTATAAAAGGGTTGTTCCGAGTATGGTTGATCATGAGACTTTCTGG 645
Query 808 TTTAGGTATTTCTATAGGGTTAACAAGCTCAAGCAAGCTGAGGATTTAAGGGCTAATCTT 867
|||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 646 TTTAGGTATTTCTACAAGGTTCATAAGCTCAAGCAAGCTGAGGATTTAAGGGCTAATCTT 705
Query 868 GTGAAACGAGCCATCTCTCTGGATGATGAAGAAGAATTGAGCTGGGATATTGATGATGAA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GTGAAACGAGCCATCTCTCTGGATGATGAAGAAGAATTGAGCTGGGATATTGATGATGAA 765
Query 928 GAGGAGAGCAGCGAGAAAGTTGTTGAAGCTACCAAAGATGTTTCAAGGTTGAAACTTGAA 987
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 766 GAGGAGAGCAGCGAGAAAGTTGTTGAAGCTACCAAAGAAGTTTCAAGATTGAAACTTGAA 825
Query 988 GGGAATGATGGTATGGGTGGTGGAGATGTGAGTGAAACTGTGAAAGATGAAGTGGAAAGT 1047
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 826 GGGAATGATGGTATGGGTAGTGGAGATGTGAGCGAAACTGTGAAAGATGAAGTGAAAAGT 885
Query 1048 ACATATTCAGTGGCTAAAGTGAGCACGCAAGATGAAGTGACAAGTGCAGATTCAGTGACT 1107
||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 886 ACAGATTCAGTGGCTAAAGTGAGCACACAAGAGGAAGTGAAAAGTGCAGATTCAGTGACT 945
Query 1108 GAAGTGAGCAATGTTGGTTTGAAGACAGATAAAGATTCTGAGGAAAAGAAGGAGA-CTGA 1166
||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | | ||
Sbjct 946 GAAGTGAGCAATGTTGGTTTGAAGACAGATACAGATTCTGAGGGAAAGAAGGA-ATCCGA 1004
Query 1167 TAGTGA-GGAAGTTCCAGAAGAAAAATCATTTGTTGATGCTGC-TCCTCCTGCGTCTGAT 1224
| | || |||||||||||||| |||| || ||||||||||||| || |||||||||||||
Sbjct 1005 T-GAGAAGGAAGTTCCAGAAGCAAAACCAGTTGTTGATGCTGCATC-TCCTGCGTCTGAT 1062
Query 1225 GAGGCTCCAATCCAAGATTCTG-TCAAACC-AACATCTGATGA-G--GCTCCAATCC-AA 1278
|||||||||| |||||||| || ||||||| || |||||| || | |||||| ||| ||
Sbjct 1063 GAGGCTCCAACCCAAGATT-TGGTCAAACCCAA-ATCTGACGAAGCTGCTCCA-TCCCAA 1119
Query 1279 GATTCTG-TCAAACCA 1293
|| || | | ||||||
Sbjct 1120 GACTCAGCT-AAACCA 1134
Score = 529 bits (286), Expect = 3e-149
Identities = 404/455 (89%), Gaps = 31/455 (7%)
Strand=Plus/Plus
Query 1258 TCTGATGAGGCTCCAATCCAAGATTCT-GTCAAACCAAAATCTGATGAGGCTGCTCCATC 1316
|||||||||||||||| |||||||| | |||||||| |||||||| || |||||||||||
Sbjct 1057 TCTGATGAGGCTCCAACCCAAGATT-TGGTCAAACCCAAATCTGACGAAGCTGCTCCATC 1115
Query 1317 CCAAGACTCAGCTAAACCAGATGTGGCTGCTTCTTCATCAACTCAACAACCATCTGAAGA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CCAAGACTCAGCTAAACCAGATGTGGCTGCTTCTTCATCAACTCAACAACCATCTGAAGA 1175
Query 1377 GGATTTGGGATGGGACGAGATCGAGGATATGAGTAGCATAGATGGTAAGGAAACGAGTCG 1436
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1176 GGATTTGGGATGGGATGAGATCGAGGATATGAGTAGCATCGATGGTAAGGAAACGAGTAG 1235
Query 1437 GTCTGGTGGTAGTCCAAACAGAGCTGAGCTGCGTAAACGTCTGAGTGCTGCAGAGGAAGA 1496
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1236 GTCTGGTGGTAGTCCAAACAGAGCTGAGCTGCGTAAGCGTCTGAGTGCTGCAGAAGACGA 1295
Query 1497 TGAAGATTTAAGTTGGGACATTGATGAAGATGACGAAGAAGAATCATCATCATCCAAAGC 1556
|||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 1296 TGAAGATTTAAGTTGGGACATTGAAGATGAAGAAGAAGAAGAATCATCATCATCCAAAGC 1355
Query 1557 TTAATGTT-AGTTTTAAAGTGGTGTGCTTTCTTACTTTTGCCAATCCTTTTACTTGTTTT 1615
|||||||| |||||||||||||||||||| | ||||| | | || ||||
Sbjct 1356 TTAATGTTTAGTTTTAAAGTGGTGTGCTT-C---CTTTT---A--C-TT------GTTTC 1399
Query 1616 TACAAGTTTCTGGCGCTTTGCCCCCATTCTTCAGTTGTTTTTCTCTTCAACGTTTCTATT 1675
|| |||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1400 TATAAGTTTCT--C-C---------ATTCTTCAGTTGTTTTTCTCTTCAACGTTTCTATT 1447
Query 1676 TTACATTGATTTGAAAATATGTTTTTAAATTTTAC 1710
| |||||||| ||||||||||||| || |||||||
Sbjct 1448 TCACATTGATATGAAAATATGTTTCTACATTTTAC 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5