BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03360.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470314 jgi|Araly1|470314|fgenesh2_kg.1__268__AT1G03360.1 1725 0.0
Ahg914996 jgi|Araly1|914996|Al_scaffold_0001_5250 518 5e-146
Ahg922858 jgi|Araly1|922858|scaffold_104139.1 272 4e-72
> Ahg470314 jgi|Araly1|470314|fgenesh2_kg.1__268__AT1G03360.1
Length=1142
Score = 1725 bits (934), Expect = 0.0
Identities = 1047/1101 (95%), Gaps = 10/1101 (1%)
Strand=Plus/Plus
Query 55 TTTTGCATCGCCATTGTTGTGTTGCTGGAGCTAAATagagagaaagagagagagTGTCTG 114
||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 32 TTTTGCATCGCCATTGTTGTGTTGCTGGAGCTAGATAGAGAGGAAGAGAGAGA----CTG 87
Query 115 TGATGGTGATGAGAAAGCTACAGTTACCGTTGAGCCAGACGCAGAAGGTTAGGTTTGAGA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 TGATGGTGATGAGAAAGCTACAGTTACCGTTGAGCCAGACGCAGAAGGTTAGGTTTGAGA 147
Query 175 GAGCAATCGAGCGGCTTCAATCACTGTCGTCGTCGGCTAACTCTGACGCTTCTGTTATCG 234
||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||
Sbjct 148 GAGCAATCGAGCGGCTTCAGTCACTTTCGTCGACGGCAAACTCTGACGCTTCTGTTATCG 207
Query 235 TCACCGACTCTATTCCCGTCAACCATGACGATGCCTTCCTCAAGGGACATGGAACTTCCG 294
||||||||||||| ||||||||||| || |||||||||||||| ||||| ||||||||||
Sbjct 208 TCACCGACTCTATCCCCGTCAACCACGATGATGCCTTCCTCAAAGGACACGGAACTTCCG 267
Query 295 AGGTCGATGGTGAGTTGCTCGCGACGGTCTGTGGAGTAGTGGAGCGTGTGGATAAGCTTG 354
|||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct 268 AGGTCGATGGTGAGTTACTGGCCACGGTCTGTGGAGTAGTGGAGCGTGTTGATAAGCTTG 327
Query 355 TCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAAGTTGGGGATATTGTGGTAGGCC 414
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 328 TCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAGGTTGGTGATATTGTTGTAGGCC 387
Query 415 GTGTCATTGAGGTTGCTCAAAAACGTTGGAGAGTGGAGCTCAACTTCAATCAGGATGGAG 474
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 388 GTGTCATTGAGGTTGCTCAAAAACGTTGGAGAGTGGAGCTCAACTTTACTCAGGATGGAG 447
Query 475 TACTGATGCTTTCTTCCATGAACATGCCTGATGGTATTCAGAGGCGAAGAACCTCTGTGG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TACTGATGCTTTCTTCCATGAACATGCCTGATGGTATTCAGAGGCGAAGAACCTCTGTGG 507
Query 535 ATGAACTCAATATGCGGAATATCTTTGTAGAGCATGATGTCGTATGTGCTGAAGTACGCA 594
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 508 ATGAACTCAATATGCGGAATATCTTTGTAGAGCACGACGTCGTTTGTGCTGAAGTACGCA 567
Query 595 ACTTTCAGCATGATGGTAGCTTGCAGTTACAAGCCAGAAGTCAGAAGTATGGCAAGCTCG 654
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 568 ACTTTCAGCATGATGGTAGCTTGCAGTTACAAGCCAGAAGCCAGAAGTATGGCAAGCTTG 627
Query 655 AGAAGGGACAACTTCTGAAGGTCGATCCTTACTTGGTTAAGAGAAGCAAACATCACTTTC 714
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AGAAGGGACAGCTTCTGAAGGTCGATCCTTACTTGGTTAAGAGAAGCAAACATCACTTTC 687
Query 715 ATTACGTAGAAAGTCTTGGGATTGATTTGATTATTGGCTGCAATGGTTTCATATGGGTTG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 ATTACGTAGAAAGTCTTGGGATTGATTTGATTATTGGCTGCAATGGTTTCATATGGGTTG 747
Query 775 GAGAACATGTCGAAGTGAGAGATCCTATGGCAATAGATGATCAGAAAGATGAGGAAATGA 834
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 748 GAGAACATGTCGAAGTGAGAGATCCTATGGCGATAGATGATCAGAAAGATGAGGAGATGA 807
Query 835 TCTCATCCTCCTCCACAGGAAAAGAGCAAAGCCATATTCCACTCGAGACTCGACAAACCA 894
|||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 808 TCTCATCCTCCTCCGCAGGAAAAGAGCAAAACCATAATCCACTCGAGACTCGACAAACCA 867
Query 895 TATGCAGAATCGGGAATGCGATACGTGTCTTGTCTAATCTAGGCTTCACCGTGACACTAG 954
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 868 TATGCAGAATCGGGAATGCGATACGCGTGTTGTCTAATCTAGGCTTCACCGTGACTCTAG 927
Query 955 AAGTAATCATGGAGACTGTTAACCTCAGTAACTCAAAGAATATTGACATACATGATATGC 1014
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 928 AAGTAATCATAGAGACTGTTAACCTCAGTAACTCAAAGAATATTGACATACACGACATGC 987
Query 1015 TTGGATCAGAGTTTCACGTTGTGGTAGCAGAGAATGAAGCTGAAAGAAGACGTACAAAGA 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 988 TTGGATCAGAGTTTCACGTTGTGGTAGCAGAGAATGAAGCTGAAAGAAGACGCACGAAGA 1047
Query 1075 GGAAAAAGTGAAAACTACCCC-TTTTTGTCACTGATGT-ATCAGAGACTTGTAACGTGTA 1132
||||||||||||| | | ||| |||||||||| ||| | | |||||||||||||||||||
Sbjct 1048 GGAAAAAGTGAAACC-ATCCCGTTTTTGTCACCGAT-TCAACAGAGACTTGTAACGTGTA 1105
Query 1133 TTAGATCAT-TCGGTCTTGTT 1152
||||||||| | || ||||||
Sbjct 1106 TTAGATCATGTGGG-CTTGTT 1125
> Ahg914996 jgi|Araly1|914996|Al_scaffold_0001_5250
Length=912
Score = 518 bits (280), Expect = 5e-146
Identities = 560/689 (81%), Gaps = 44/689 (6%)
Strand=Plus/Plus
Query 117 ATGGTGATGAGAAAGC-T-A-C---AGTTACCGTTGAGCCAGACGCAGAAGGTTAGGTTT 170
|||||||||||||||| | | | || |||| |||| ||||||||| ||||| ||||||
Sbjct 1 ATGGTGATGAGAAAGCTTCAGCTAGAGCTACCATTGAACCAGACGCAAAAGGTCAGGTTT 60
Query 171 GAGAGAGCAATCGAGCGGCTTCAATCACTGTCGTCGTCGGCTAACTCTGAC-GCTTCTGT 229
||||||| || |||||||| |||| || | || ||| | || | || | |||||
Sbjct 61 AAGAGAGCTATGGAGCGGCTACAAT-TCT-T-ATCATCGAC-AA--CAAACAAC-TCTGT 113
Query 230 TATCGTCACCGACTCTATTCCCGTCAACCATGACGATGCCTTCCTCAAGGGACATGGAAC 289
||||||| ||||||| |||| || || ||| | | || |||| |||||||| |||||
Sbjct 114 TATCGTCGCCGACTCCATTCACG--AA-GATG-C-CTTCC-TCCTTAAGGGACACGGAAC 167
Query 290 TTCCGAGGTCGATGGTGAGTTGCTCGCGACGGTCTGTGGAGTAGTGGA-GCGTGTGGATA 348
|||||||||||||||||||||| | ||||||||||||||||| || || | ||||| |
Sbjct 168 TTCCGAGGTCGATGGTGAGTTGATGGCGACGGTCTGTGGAGTTGT-GACTCACGTGGACA 226
Query 349 AGCTTGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAAGTTGGGGATATTGTGG 408
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 227 AGCTCGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAGGTTAAAGATATTGTGG 286
Query 409 TAGGCCGTGTCATTGAGGTTGCTCAAAAA-C-GTTGGAGAGTGGAGCTCAACTTCAA-TC 465
|||| |||||||| ||||| |||||||| | |||||||| |||||||||||| | | |
Sbjct 287 TAGGACGTGTCATCGAGGT--CTCAAAAAGCTGTTGGAGATTGGAGCTCAACT-CTACTA 343
Query 466 AGGATGGAGTACTGATGCTTTCTTCCATGAACATGCCTGATGGTATTCAGAGGCG-AAGA 524
| |||||| | ||| ||||||||| ||| | | ||||| | | |||||||| || |
Sbjct 344 AAGATGGAATTTTGAAGCTTTCTTCTATGGATAA---TGATG-T-T-CAGAGGCGTAA-A 396
Query 525 ACCTCTGTGGATGAACTCAATATGCGGAATATCTTTGTAGA-GCATGATGTCGTATGTGC 583
|| | |||||||||||||||||||||||||||| ||||||| | |||||||||| |||||
Sbjct 397 ACGTATGTGGATGAACTCAATATGCGGAATATCATTGTAGAAG-ATGATGTCGTTTGTGC 455
Query 584 TGAAGTACGCAACT-TTCAGCATGATGGTAGCTTGCAGTTACAAGCCAGAAGTCAGAAGT 642
|||||| | | | |||| | ||||| | ||| || ||| ||| | |||| | || |
Sbjct 456 CGAAGTAGG-ATGTATTCACCGCGATGGCGGTTTGGAGCTACGAGCTACAAGTTACAAAT 514
Query 643 ATGGCAAGCTCGAGAAGGGACAACTTCTGAAGGTCGATCCTTACTTGGTTAAGAGAAGCA 702
|||||||||| || |||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 515 ATGGCAAGCTTGAAAAGGGACAACATCTGATGGTTGATCCTTACTTGGTTAAGAGAAGCA 574
Query 703 AACAT-CACTTTCATTACGTAGAAAGTCTTGGGATTGATTTGATTATTGGCTGCAATGG- 760
| ||| |||||||||||| |||||||||||||||| ||||||||||| ||| |||||||
Sbjct 575 A-CATTCACTTTCATTACATAGAAAGTCTTGGGATCGATTTGATTATCGGCCGCAATGGC 633
Query 761 TTTCATATGGGTTGGAGAACATGTCGAAG 789
||| || |||||||| ||||| ||| |||
Sbjct 634 TTT-ATTTGGGTTGGGGAACACGTCCAAG 661
> Ahg922858 jgi|Araly1|922858|scaffold_104139.1
Length=852
Score = 272 bits (147), Expect = 4e-72
Identities = 241/286 (84%), Gaps = 8/286 (3%)
Strand=Plus/Plus
Query 225 TCTGTTATCGTCACCGACTCTATTCCC-GTCAACCATGACGATGCCTTCCTCAAGGGACA 283
||||| ||||| ||||||| | |||| ||||||| | || |||||| | ||||| ||
Sbjct 89 TCTGTCATCGTTGCCGACTCCA-TCCCTTTCAACCACAAAGAAGCCTTCTTTAAGGGGCA 147
Query 284 TGGAACTTCCGAGGTCGATGGTGAGTTGCTCG-CGACGGTCTGTGGAGTAGTGGA-GCGT 341
||||||||| | |||| ||||||||||| | |||||||||||||||| || ||
Sbjct 148 CGGAACTTCCTTGATCGACGGTGAGTTGCT-GACGACGGTCTGTGGAGTTGT-GATAAAC 205
Query 342 GTGGATAAGCTTGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAAGTTGGGGAT 401
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 206 GTGGACAAGCTCGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAGGTTGGGGAT 265
Query 402 ATTGTGGTAGGCCGTGTCATTGAGGTTGCTCAAAAACGTTGGAGAGTGGAGCTCAACTTC 461
||||||||||||||||| ||| |||||| ||||| ||||||| |||||||||||||| |
Sbjct 266 ATTGTGGTAGGCCGTGTGATTCAGGTTGGTCAAAGCCGTTGGAAAGTGGAGCTCAACT-C 324
Query 462 AA-TCAGGATGGAGTACTGATGCTTTCTTCCATGAACATGCCTGAT 506
| ||| |||||| |||||| |||||||||||| || |||||||||
Sbjct 325 TACTCAAGATGGAATACTGAAGCTTTCTTCCATCAATATGCCTGAT 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5