BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03390.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919007 jgi|Araly1|919007|scaffold_100288.1 2152 0.0
> Ahg919007 jgi|Araly1|919007|scaffold_100288.1
Length=1429
Score = 2152 bits (1165), Expect = 0.0
Identities = 1317/1391 (95%), Gaps = 7/1391 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTGCATCCAAGAACTTCATTTCACTCACCTCCATATCCCAGTCACCATCAAC 60
|||| |||||| |||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 21 ATGGATTCTTGTATCCAAGAACTTCATTTCTCCCACCTCCATATCCCAGTCACGATCAAC 80
Query 61 CAGCAATTTCTTGTACATCCATCAAGTCCAACACCTGC-AA--ATCAATCTCCTCACCAT 117
||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 81 CAGAAATTTCTTGTACATCCATCCAGTCCAACACCTGCAAATCATCAATCTCCTCACCAT 140
Query 118 AGTCTCTATCTATCAAACCTAGATGATATAATCGGAGCACGAGTTTTCACTCCCTCCGTT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AGTCTCTATCTATCAAACCTAGATGATATAATCGGAGCACGAGTTTTCACTCCCTCCGTT 200
Query 178 TATTTCTATCCATCAACCAATAATCGAGAATCTTTTGTACTGAAACGGCTTCAAGATGCT 237
||||||||||| |||||||||| || ||||||||| ||||||||||| ||||||||||||
Sbjct 201 TATTTCTATCCGTCAACCAATACTCAAGAATCTTTGGTACTGAAACGACTTCAAGATGCT 260
Query 238 CTTAGTGAGGTTTTAGTTCCGTATTATCCACTCTCTGGTAGGTTAAGAGAAGTGGAAAAT 297
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CTTGGTGAGGTTTTAGTTCCGTATTATCCACTCTCTGGTAGGTTAAGAGAAGTGGAAAAT 320
Query 298 GGGAAACTGGAAGTTTTCTTTGGAGAAGAGCAAGGTGTGTTAATGGTGTCGGCAAATTCA 357
||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 321 GGGAAACTGGAAGTTTTCTTTGGAGAAGAGCAAGGTGCGTTAATGGTGTCTGCGAATTCT 380
Query 358 TCAATGGATTTAGCTGATCTTGGAGATCTTACAGTTCCAAATCCAGCTTGGTTACCATTA 417
||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 381 TCAATGGCTTTATCTGATCTTGGAGATCTTACAGTGCCAAATCCAGCCTGGTTACCACTA 440
Query 418 ATCTTTCGAAACCCAGGAGAAGAAGCTTACAAGATCCTCGAAATGCCGTTACTTATAGCT 477
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 441 ATCTTTCGAAACCCAGGAGAAGAAGCTTACAAAATCCTTGAAATGCCGTTACTTATAGCT 500
Query 478 CAAGTAACGTTTTTCACCTGTGGTGGATTTAGCCTCGGGATTAGACTTTGCCATTGCATT 537
|||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 501 CAAGTAACGTTTTTCACCTGTGGTGGGTTTAGCCTTGGCATTAGACTCTGCCATTGCATC 560
Query 538 TGTGATGGTTTTGGAGCTATGCAGTTTCTCGGCTCGTGGGCAGCTACAGCGAAAACCGGA 597
|| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 561 TGCGATGGTTTTGGAGCCATGCAGTTTCTTGGCTCATGGGCAGCTACAGCAAAAACCGGA 620
Query 598 AAATTGATTGCAGATCCTGAGCCGGTTTGGGATAGAGAGACTTTCAAACCAAGAAACCCT 657
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 621 AAATTGATTACAGATCCTGAGCCGGTTTGGGATAGAGAGACTCTCAAACCAAGAAACCCT 680
Query 658 CCAATGGTGAAATACCCACATCATGAGTATCTTCCAATTGAAGAAAGATCGAATTTGACG 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 681 CCAATGGTGAAATACCCACATCATGAATATCTTCCAATTGAAGAAAGATCGAATTTGACG 740
Query 718 AACTCCTTGTGGGATACAAAGCCATTGCAGAAATGTTACAGGATAAGCAAAGAGTTTCAG 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AACTCCTTGTGGGATACGAAGCCATTGCAGAAATGTTACAGGATAAGCAAAGAGTTTCAG 800
Query 778 TGTCGTGTTAAAAGCATTGCTCAAGGAGAAGA-TCCAACCTTAGTTTGTAGCACGTTTGA 836
||||| || ||| |||||||||||||| |||| || |||||||||||| |||||||||||
Sbjct 801 TGTCGGGTCAAAGGCATTGCTCAAGGACAAGACTC-AACCTTAGTTTGCAGCACGTTTGA 859
Query 837 TGCAATGGCTGCACACATATGGAGATCATGGGTCAAAGCACTTGATGTGAAGCCACTGGA 896
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 860 TGCAATGGCTGCACATATATGGAGATCATGGGTCAAAGCCCTTGACGTGAAGCCACTGGA 919
Query 897 TTACAATCTCAGGCTCACGTTTTCAGTCAACGTAAGAACAAGACTAGAAACCCTAAAGTT 956
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 920 TTACAATCTCAGGCTCACGTTTTCAGTCAACGTAAGAACAAGACTCGAAACCGTAAAGTT 979
Query 957 AAGAAAAGGTTTTTACGGCAATGTGGTGTGTTTGGCTTGCGCAATGAGCAGTGTCGA-GA 1015
||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| | |
Sbjct 980 AAGAAAAGGGTTTTACGGGAATGTGGTGTGTTTGGCCTGTGCAATGAGCAGTGTCAACG- 1038
Query 1016 GTCTTATTAACGATTCTCTTTCTAAGACAACACGTTTGGTTCAGGATGCGAGACTTAGGG 1075
||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1039 GTCTTATTAACGATTCTATTTCTAAGACAACTCGTTTGGTCCAGGAGGCGAGACTTAGGG 1098
Query 1076 TTTCAGAGGATTACTTGCGTTCTATGGTGGATTACGTTGATGTAAAGAGGCCAAAGAGGT 1135
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1099 TTTCAGAGGATTACTTGCGGTCTATGGTGGATTACGTTGAGGTAAAGAGGCCAAAGAGGT 1158
Query 1136 TAGAGTTTGGTGGGAAGCTAACGATAACGCAATGGACCCGGTTTGAAATGTATGAGACTG 1195
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1159 TAGAGTTTGGTGGGAAGCTAACGATAACACAATGGACCCGGTTTGAAATGTATGAGACTG 1218
Query 1196 CGGATTTTGGATGGGGTAAACCGGTTTATGCAGGGCCAATTGACTTGAGGCCTACGCCAC 1255
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 CAGATTTTGGATGGGGTAAACCGGTTTATGCAGGGCCAATTGACTTGAGGCCTACGCCAC 1278
Query 1256 AGGTTTGCGTGTTGTTGCCACAAGGAGGAGTTGAGTCTGGCAATGACCAAAGCATGGTGG 1315
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AGGTTTGCGTGTTGTTGCCTCAAGGAGGAGTTGAGTCTGGCAATGACCAAAGCATGGTGG 1338
Query 1316 TTTGCCTTTGCTTGCCTCCTACTGCTGTTCATACCTTTACTCGGCTTCTATCTTTAAATG 1375
|||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| ||
Sbjct 1339 TTTGCCTTTGCTTGCCTCCTTCTGCTGTTCATAATTTTACTCGGCTTCTGTCTTTAACTG 1398
Query 1376 ATCATAAATAA 1386
|||||||||||
Sbjct 1399 ATCATAAATAA 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5