BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03430.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919008 jgi|Araly1|919008|scaffold_100289.1 787 0.0
> Ahg919008 jgi|Araly1|919008|scaffold_100289.1
Length=516
Score = 787 bits (426), Expect = 0.0
Identities = 488/518 (94%), Gaps = 4/518 (1%)
Strand=Plus/Plus
Query 266 GGTTCTTGGTAAACTTTAGCTATGAACACCATCGTCGTTGCTCAGTTGCAGAGACAATTT 325
|||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1 GGTTCTTGGTCAAC-TTAGCCATGAACACCACCGTCGTTGCTCAGTTGCAGAGACAATTT 59
Query 326 CAAGACTACATCGTTTCTCTTTATCAACAGGGATTTCTGGATAATCAGTTCTCAGAGTTG 385
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 CAAGACTACATCGTTTCTCTTTATCAACAGGGATTTCTGGATAATCAGTTCTCTGAGTTG 119
Query 386 AGAAAGTTGCAAGATGAAGGAACCCCTGATTTTGTAGCTGAAGTTGTCTCTCTATTCTTC 445
|||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||
Sbjct 120 AGAAAGTTGCAAGATGAAGGCACTCCTGATTTTGTATCTGAAGTTGTCTCTCTCTTCTTT 179
Query 446 GACGACTGTTCCAAGCTTATTAATACCATGTCTATATCCCTGGAGCGGCCAGATAATGTG 505
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 180 GACGACTGTTCCAAGCTTATTGATACCATGTCTGCATCCCTGGAGCGGCCAGATAATGTG 239
Query 506 GATTTCAAACAGGTGGATTCAGGTGTTCATCAACTCAAGGGTAGTAGCTCCAGTGTCGGT 565
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 240 GATTTCAAACAGGTAGATTCAGGTGTGCATCAACTCAAGGGTAGTAGCTCAAGTGTTGGT 299
Query 566 GCA-AGGAGGGTGAAAAATGTGTGCATATCTTTCAAGGAATGTTGCGATGTTCAGAACCG 624
||| || ||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 300 GCACAG-AGGGTGAAAAATGTGTGTATATCTTTCAAGGAATGTTGCCATGTTCAGAACCG 358
Query 625 TGAAGGGTGTCTAAGGTGTTTACAGCAGGTGGATTATGAATATAAGATGTTAAAGACTAA 684
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 359 TGAAGGGTGTTTAAGGTGTTTGCAGCAGGTGGATTATGAATATAAGATGTTAAAGACCAA 418
Query 685 ACTTCAGGATCTCTTTAATTTAGAGAAACAGATCCTCCAAGCTGGAGGTACAATTCCTCA 744
|||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 419 ACTTCAGGATCTGTTTAATTTAGAGCAACAGATCCTCCTAGCTGGTGGTACAATTCCTCA 478
Query 745 AGTGGATATAAATTAGACCGATGCGTTTCTCGA-TTAT 781
|||||||||||||||||| |||||||||||||| ||||
Sbjct 479 AGTGGATATAAATTAGACTGATGCGTTTCTCGAATTAT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5