BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03440.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470318 jgi|Araly1|470318|fgenesh2_kg.1__272__AT1G03440.1 2333 0.0
> Ahg470318 jgi|Araly1|470318|fgenesh2_kg.1__272__AT1G03440.1
Length=1632
Score = 2333 bits (1263), Expect = 0.0
Identities = 1531/1656 (92%), Gaps = 35/1656 (2%)
Strand=Plus/Plus
Query 14 GGTTTTTGGCTTCCTTCTCAAGCCAttttgtttactctctttctcttctctcgataaacc 73
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 GGTTTTTGGCTTCCTTCTCAAGCCATTTTGTTTA--CTCTTTCTCTTCTCTCGATAAA-C 57
Query 74 tttcttttcttccttttGCTAATCGTTTATTGATAATCCTCCATTAAAGCTCTCACGGAA 133
| |||| | |||| |||||| | |||||||||| ||||||||||||||||||||
Sbjct 58 ---C-TTTC-T--TTTT--TAATCG--T-TTGATAATCCGCCATTAAAGCTCTCACGGAA 105
Query 134 GCTCCCACGAGAACACCTT-CTTTCCACCACATAAACCAGAGACTTTCCCTCTCACGAGA 192
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 106 GCTCCCACGAGAACACCTTAC-TTCCACCACATAAACCAGAGACTTTCCCTCTCACGAGA 164
Query 193 AATCAGAAAACAAAACCCATTT--TCTCTACTTTACAGCTCGTCTCTGTTCTTCCCTCTG 250
||||||||| || |||||||| ||| | |||||||| | ||||||||||||| || |
Sbjct 165 AATCAGAAACCATTACCCATTTGCTCTGTGCTTTACAGGTTGTCTCTGTTCTTCTCT-TT 223
Query 251 TGTATATATATAGTCTCTGTTTCTTGAACCTGTAACGGCTAAGTCTgaagaagaagaaga 310
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 224 TGTATATATATAGTCTCTGTTTCTTGAACCTGTAACAGCTAAGTCTGAAGAAGAAGAAGA 283
Query 311 agaagaTGATGATGAGATTTACCAAGTTGGTTTGGTGTTTGATGTTCCTGCTTCGATTCG 370
|| | | ||||||||| ||||||| |||| | |||||||||||| |||||||||||||||
Sbjct 284 AG-A-A-GATGATGAGCTTTACCACGTTGATATGGTGTTTGATGATCCTGCTTCGATTCG 340
Query 371 GCTTCTTCACGGAGGCGATTCTCGACCCAGTTGATTTCTTGGCTCTGCAAGCTATTCGTA 430
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 341 GGTTCTTCACGGAGGCGATTCTGGACCCAGTTGATTTCTTGGCTCTGCAAGCGATTCGTA 400
Query 431 AATCCCTCGATGACTTGCCAGGTTCCAAGTTCTTCGAGTCTTGGGATTTCACTTCTGATC 490
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AATCGCTCGATGATTTGCCAGGTTCCAAGTTCTTCGAGTCTTGGGATTTCACTTCTGATC 460
Query 491 CATGCGGCTTCGCTGGCGTCTACTGCAACGGAGATAAAGTAATCTCTCTCAATCTCGGCG 550
| || ||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||
Sbjct 461 CTTGTGGCTTCGCTGGCGTCTACTGCGACGGAGAAAAAGTTATTTCTCTCAATCTCGGCG 520
Query 551 ATCCTAGAGCCGGTTCACCCGGTTTATCGGGTCGGATCGACCCAGCAATAGGCAAACTCT 610
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 521 ATCCCAGAGCCGGGTCACCCGGTTTATCGGGTCGGATCGACCCAGCTATAGGCAAACTCT 580
Query 611 CTGCACTCACTGAGCTCTCCATTGTCCCCGGCAGAATCATGGGTGCGTTACCGGCAACAA 670
|||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 581 CTGCTCTCACGGAGCTCTCCATTGTCCCCGGCAGAATCATGGGTGCTTTGCCGGCAACAG 640
Query 671 TCTCTCAGCTAAAAGACCTTCGTTTTCTCGCAATCAGCCGGAATTTCATCTCCGGCGAGA 730
|||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 641 TCTCTCAGCTTAAAGACCTTAGATTTCTCGCAATCAGTCGGAATTTCATCTCCGGCGAGA 700
Query 731 TTCCGGCGAGTCTCGGCGAGGTTCGTGGTCTCAGAACACTGGATTTAAGCTATAATCAAT 790
|||||||||||||||| |||||||| || || |||||||||||||| || || ||||| |
Sbjct 701 TTCCGGCGAGTCTCGGTGAGGTTCGCGGACTTAGAACACTGGATTTGAGTTACAATCAGT 760
Query 791 TAACCGGAACTATCTCTCCGTCAATCGGATCGTTACCGGAGCTCTCCAATTTGATTCTCT 850
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 761 TAACCGGAACTATCTCTCCGTCAATCGGATCCTTACCGGAGCTCTCCAATTTGATTCTCT 820
Query 851 GCCACAACCACTTAACCGGATCAATACCACCGTTTCTCTCACAAACTCTAACCCGAATCG 910
||||||| ||||||||||||||||| || |||||||| |||||||| |||||||||||||
Sbjct 821 GCCACAATCACTTAACCGGATCAATCCCTCCGTTTCTATCACAAACCCTAACCCGAATCG 880
Query 911 ATCTCAAACGCAACAGCCTCACCGGCTCAATCTCACCGGCGTCTCTCCCTCCGTCGCTTC 970
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 881 ATCTCAAACGCAACAGCCTCACCGGCTCAATCTCTCCGGCGTCTCTCCCTCCGTCGCTAC 940
Query 971 AATACCTCTCACTCGCTTGGAACCAGTTAACCGGATCGGTATACCATGTTTTACTCCGGT 1030
||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 941 AATACCTCTCACTCGCTTGGAACCAGTTAACCGGACCGGTAGACCATGTCTTACTCCGGT 1000
Query 1031 TGAACCAGCTTAACTACCTTGATCTCAGCTTAAACCGGTTCACCGGTACAATCCCCGCTC 1090
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1001 TAAACCAGCTTAACTACCTCGATCTCAGCTTAAACCGGTTCACCGGTACAATCCCCGGTC 1060
Query 1091 GAGTCTTCGCCTTCCCGATCACAAATCTTCAGTTACAACGCAATTTCTTCTTCGGTTTAA 1150
|| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||| || |
Sbjct 1061 GAATCTTCGCCTTCCCGATCACAAACCTTCAATTACAACGCAATTTCTTCTACGGATTGA 1120
Query 1151 TTCAGCCGGCGAATCAAGTGACGATCTCC-ACCGTCGATCTCAGCTACAATCGATTCTCC 1209
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1121 TTCAGCCGGCGAATCAAGTGACGATC-CCAACCGTCGATCTCAGCTACAATCGATTCTCC 1179
Query 1210 GGTGGGATATCTCCGCTTCTCTCAAGCGTTGAGAATCTCTACTTAAACAGCAATCGTTTC 1269
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1180 GGTGGGATATCTCCGCTTCTCTCAAGCGTAGAGAATCTCTACTTAAACAGCAATCGCTTC 1239
Query 1270 ACCGGTGAAGTCCCGGCGAGTTTCGTGGAGAGGTTGTTATCGGCGAACATACAGACTCTG 1329
||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 1240 ACCGGCGAAGTTCCGGCTAGTTTCGTGGAGAGGTTGTTATCGGCGAGTATACAGACGCTG 1299
Query 1330 TATCTACAGCATAATTTCTTGACGGGAATACAGATTAGCCCGGCGGCGGAAATCCCGGTG 1389
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1300 TATCTGCAGCATAACTTCTTGACGGGAATACAGATAAGCCCGGCGGCGGAAATCCCGGTG 1359
Query 1390 AGCAGCTCGCTGTGTCTGCAGTATAACTGTATGGTGCCGCCGTTACAAACCCCGTGTCCG 1449
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1360 AGCAGCTCGCTGTGTCTGCAGTATAACTGTATGGTGCCGCCGTTACAGACGCCGTGTCCG 1419
Query 1450 CTAAAGGCCGGCCCACAAAAGACTAGGCCCACTACACAATGCACCGAGTGGCGAGGGTAG 1509
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1420 CTTAAGGCCGGCCCACAAAAGACTAGGCCCACTACACAATGCAGCGAGTGGCGAGGGTAG 1479
Query 1510 TTTGGTAAATTACGCTTTCTTATATAATACTATGtttttattttttt--GGTTAAAGTTT 1567
|||||||||| || ||||||||||| | ||||||||| ||||||| ||||| |||||
Sbjct 1480 TTTGGTAAATGCCGTTTTCTTATATACT--TATGTTTTTCTTTTTTTTTGGTTATAGTTT 1537
Query 1568 TTGAGGAACAGAG--TGTTTCATCGTGTTaaaaaaaaaCTTTTAAAGGAAAAAA-CGATT 1624
|||||||||| || ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 1538 TTGAGGAACACAGGGTGTTTCAACGTGTTAAAAAAA--CTTTTAAAGGAAAAAAACGATT 1595
Query 1625 CGTTTATTCGTT-GGTGAGAATGAAGATTAGAGTTT 1659
|||||||||||| |||||||||||||||||||||||
Sbjct 1596 CGTTTATTCGTTTGGTGAGAATGAAGATTAGAGTTT 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5