BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03445.1
Length=2727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470319 jgi|Araly1|470319|fgenesh2_kg.1__273__AT1G03445.1 3563 0.0
> Ahg470319 jgi|Araly1|470319|fgenesh2_kg.1__273__AT1G03445.1
Length=2506
Score = 3563 bits (1929), Expect = 0.0
Identities = 2316/2498 (93%), Gaps = 45/2498 (2%)
Strand=Plus/Plus
Query 30 AAATTTTAGGCTATAAAATGGAGACGAAGGCGATTGGATTTCACCACCTTTCTCCACCAC 89
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1 AAATTTTAGGCTATAAAATGGAGACGAGGGCGATGGGATTTCACCACCTTTCTCCACCAC 60
Query 90 AAAATATTGTGTTATGGCTCCT-GATC--AATC-T-T-ATCAATATCCATCTCCTTCGTA 143
||| | | |||||||| || ||| | || | | ||||||||||||||||||| ||
Sbjct 61 -AAA-A---TCTTATGGCTTCTCAATCGTATTCGTATCATCAATATCCATCTCCTTCTTA 115
Query 144 TGAATCGATACAGACCTTTTACGATACCGATGAGGATTGGCCGGGTCCTAGATGCGGCCA 203
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 116 TGAATCGATACAGACCTTTTACGATACCGATGAGGGTTGGCCGGGACCTAGATGCGGCCA 175
Query 204 TACTCTCACGGCGGTTTTCGTCAACAATTCCCATCAGCTTATCCTCTTCGGCGGCAGTAC 263
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TACTCTCACGGGGGTTTTCGTCAACAATTCCCATCAGCTTATCCTCTTCGGCGGCAGTAG 235
Query 264 TACTGCCGTCGCCAACCATAACTCCTCCTTACCCGAGATCAGTTTAGATGGCGTCACCAA 323
|||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 236 TACTGCCGTCACCACCCATGACTCCTCCTTACCCGAGATCAGTTTAGAAGGCGTCACCAA 295
Query 324 TTCGGTCCATTCTTTTGATGTTTTGACCAGGAAGTGGACAAGGCTTAATCC-GATTGGTG 382
|||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 296 TTCGGTGCATTCTTTTGATGTTTTGACCAGGAAGTGGACACGGCTTAATCCGGA-TGGTG 354
Query 383 ACGTTCCGTCTCCCAGGGCTTGTCATGCTGCCGCTTTATATGGCACCTTGATCCTTATTC 442
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 355 ACGTTCCGTCTCCCAGGGCTTGTCATGCTGCCGCTTTATATGGCACCTTGCTCCTTATTC 414
Query 443 AGGGTGGGATTGGTCCATCCGGACCTTCTGATGGAGATGTCTACATGCTTGACATGACTA 502
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 415 AGGGTGGGATTGGTCCATCGGGGCCTTCTGATGGAGATGTCTACATGCTTGACATTACTA 474
Query 503 ATAACAAGTGGATTAAGTTTCTGGTTGGAGGGGAGACTCCAAGCCCTCGCTATGGCCATG 562
||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 475 ATAACAAGTGGCTTAAGTTGCTGGTTGGAGGGGAGGCTCCAAGCCCTCGCTATGGCCATG 534
Query 563 TTATGGATATAGCTGCTCAGAGGTGGCTTGTCATATTCAGCGGGAATAATGGAAATGAAA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTATGGATATAGCTGCTCAGAGGTGGCTTGTCATATTCAGCGGGAATAATGGAAATGAAA 594
Query 623 TTCTGGATGATACATGGGCATTGGACACGCGTGGACCATTTTCATGGGACAGATTGAACC 682
|||| | ||||||||||||| |||||||||||||| ||||| | ||||||||||||||||
Sbjct 595 TTCTTGCTGATACATGGGCACTGGACACGCGTGGATCATTTACGTGGGACAGATTGAACC 654
Query 683 CGTCTGGCAATCAGCCAAGTGGGAGAATGTATGCTTCAGGTAGTTCTCGAGAAGATGGTA 742
| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 655 CATCTGGCAATCAGCCAAGTGGGAGAATGTATGCTTCTGGTACTTCTCGAGAAGATGGTA 714
Query 743 tttttttGCTCTGCGGTGGAATAGATCACTCAGGAGTGACACTGGGAGATACTTACGGGC 802
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 715 TTTTTTTGCTCTGCGGTGGAATAGATCACTCAGGAGTGACACTGGGAGATACCTACGGGC 774
Query 803 TGAAAATGGATAGCGATA---A-TGT--TTGGACTCCTGTTCCAGCTGTAGCTCCTTCCC 856
||||||||||||||| || | ||| ||||||||||||||| | ||||||||||||||
Sbjct 775 TGAAAATGGATAGCGTTAGTCAGTGTGCTTGGACTCCTGTTCCTGGTGTAGCTCCTTCCC 834
Query 857 CGAGATATCAACATACTGCGGTTTTCGGAGGTTCAAAACTGCATGTCATTGGGGGTATAC 916
||||||||||||||||||||||||| || ||| ||||| ||||||||||||||||| |||
Sbjct 835 CGAGATATCAACATACTGCGGTTTTTGGGGGTCCAAAAATGCATGTCATTGGGGGTGTAC 894
Query 917 TGAATAGGGCTCGCCTAATCGATGGTGAAGCAGTTGTTGCTGTGCTTGATACTGAGACTG 976
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct 895 TGAATAGGGCTCGCCTAATCTATGGTGAAGCTGTTGCTGCTGTGCTTGATACTGAGACTG 954
Query 977 GTGAATGGGTAGATACCAATCA-ACCAGAGACCTCTGCGAGCGGCGCCA-ATAGACAAAA 1034
|||||||| ||||| || || | ||||||||||||| ||| ||||| | ||||||||||
Sbjct 955 GTGAATGGTTAGATGCCGAT-AGACCAGAGACCTCTATGAGTGGCGC-ATATAGACAAAA 1012
Query 1035 TCAATATCAACTTATGCGACGTTGTCACCATGCTGCTGCATCGTTTGGCAGCCACCTATA 1094
||||||||||||||||||||||| |||||||||||||||||| ||||| | |||| | ||
Sbjct 1013 TCAATATCAACTTATGCGACGTTATCACCATGCTGCTGCATCATTTGGTACCCACATGTA 1072
Query 1095 TGTGCATGGCGGGATTAGAGAAGATGTATTGCTCGACGATTTGCTAGTTGCTGAAACATC 1154
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1073 TGTGCATGGCGGGATTAGAGATGATGTATTGCTTGACGATTTGCTAGTGGCTGAAACATC 1132
Query 1155 CCAGTCTTCAAGTCCTGAACCAGAAGAAGATAATCCTGATAATTATATGTTGCTCGACGA 1214
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1133 CCAGTCTTCAAGTCCTGAACTAGAAGAAGATAATCCTGAAAATTATATGTTGCTCGACGA 1192
Query 1215 CTATCTAATGGATGAA---CCTAAGCCTTTAAGTTCTGAACCAGAAGCTTCATCCTTTAT 1271
| ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1193 TTTTCTAATGGATGAAATACCTAAGCCTTTAGGTTCTGAACCAGAAGCTCCATCCTTTAT 1252
Query 1272 AATGAGGAGCACAAGTGAAATTGCGATGGATAGATTGGCAGAGGCACATAACTTACCAAC 1331
|| ||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct 1253 AAGGAGGAGCTCAAGTGAAAGTGCGATGGAGAGATTGGCAGAGGCATATAACTTACCAAC 1312
Query 1332 TATCGAAAATGCTTTTTATGATAGTGCTATTGAAGGATACGTTCCACTTCAACATGGAGC 1391
||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1313 TATAGAAAATGCTTTTTATGATAGTGAAATTGAAGGATATGTTCCACTTCAGCATGGAGC 1372
Query 1392 TGAGACGGTTGGAAATCGAGGTGGCTTGGTGAGAACTGCAAGCTTGGATCAATCTACTCA 1451
|||| ||| ||||||| |||||||||||||||||||| || || | | |||||
Sbjct 1373 TGAGTCGGATGGAAATAGAGGTGGCTTGGTGAGAACT--AA--TT----C--T--ACTCA 1420
Query 1452 AGACTTGCATAAGAAGGTCATTTCGACACTGTTGAGACCTAAAACCTGGACGCCTCCTGC 1511
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1421 AGACTTGCATAAAAAGGTCATTTCGACTCTGTTGAGACCTAAAACCTGGATGCCTCCTGC 1480
Query 1512 CAACAGAGATTTTTTCTTGAGTTATTTAGAAGTTAAGCATTTGTGCGATGAGGTAGAGAA 1571
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 1481 CAACAGAGATTTTTTCTTGAGTTATTTAGAAGTCAAGTATTTGTGCGATGAGGTGGAGAA 1540
Query 1572 AATATTTATGAATGAACCAACACTTCTTCAGCTCAAAGTTCCAATCAAAGTCTTCGGCGA 1631
|||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1541 AATATTTAAGCATGAACCAACACTTCTTCAGCTCAAAGTTCCTATCAAAGTCTTCGGCGA 1600
Query 1632 TATCCATGGACAATACGGGGATTTGATGCGTTTATTTCATGAATATGGACATCCTTCAGT 1691
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1601 TATCCATGGACAATACGGGGATTTGATGCGTTTATTTCATGAATATGGATATCCTTCAGT 1660
Query 1692 GGAAGGAGATATCACCCATATAGACTATTTGTTTTTGGGAGATTATGTTGACCGTGGACA 1751
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1661 GGAAGGAGATATCACGCATATAGACTATTTGTTTTTGGGAGATTATGTTGACCGAGGACG 1720
Query 1752 ACACAGCTTGGAGATCATCATGTTGCTGTTTGCTTTGAAGATAGAATATCCGAAGAACAT 1811
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1721 ACACAGCTTGGAGACCATCATGTTGCTGTTTGCTTTGAAGATTGAATATCCGAAGAACAT 1780
Query 1812 CCACTTGATTCGTGGAAATCATGAGTCTCTTGCAATGAATAGAATTTATGGTTTTCTTAC 1871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 CCACTTGATTCGTGGAAATCATGAGTCTCTTGCAATGAATAGAATTTATGGTTTTCTTAA 1840
Query 1872 AGAATGCGAAGAAAGAATGGGCGAGTCCTATGGGTTCGAAGCATGGTTAAAGATTAATCA 1931
||||||| ||||||||||||| || ||| ||||||| |||||||||||||||||||||||
Sbjct 1841 AGAATGCAAAGAAAGAATGGGTGATTCCGATGGGTTTGAAGCATGGTTAAAGATTAATCA 1900
Query 1932 AGTTTTTGATTATCTTCCGCTTGCTGCACTTCTAGAAAAGAAAGTTTTGTGTGTCCATGG 1991
|||||||||| |||||||||||||||||||||| ||||||| ||||||||| || || ||
Sbjct 1901 AGTTTTTGATCATCTTCCGCTTGCTGCACTTCTCGAAAAGAGAGTTTTGTGCGTACACGG 1960
Query 1992 CGGAATTGGGAGGGCAGTTAC-GATCGAAGAAATTGAAAATATCGAAAGGCCGGCATTCC 2050
||||||||||||||||| ||| | ||||| |||||||||| ||| ||||||||| ||||
Sbjct 1961 CGGAATTGGGAGGGCAGATACCG-TCGAACAAATTGAAAAGATCAAAAGGCCGGTGTTCC 2019
Query 2051 CGGATACTG--GA-TCAATGGTCTTGAAAGACATCTTATGGTCAGATCCTACGATGAATG 2107
|||||||| || ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2020 CGGATACTACTGAATCAATTGTCTTGAAAGACATCTTATGGTCAGATCCTACGAGGAATG 2079
Query 2108 ACACTGTTTTGGGTATAGTAGACAATGCCAGAGGAGAAGGTGTTGTCTCATTTGGGCCTG 2167
|||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
Sbjct 2080 ACACTGTTTTGGGTATAGTAGAAAATCCCAGAGGAGAAGGTGTTGTCTCATTCGGGCCGG 2139
Query 2168 ATATAGTCAAGGCATTTCTAGAAAGGAATGGTCTGGAGATGATACTAAGAGCACACGAGT 2227
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2140 ATATAGTCAAGGCATTTCTAGAAAGGAATGGACTGGAGATGATACTAAGAGCACACGAGT 2199
Query 2228 GTGTTATTGACGGCTTTGAAAGATTCGCTGACGGACGGCTTATAACAGTCTTTTCTGCTA 2287
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2200 GTGTTATTGACGGCTTTGAAAGATTCGCTCAAGGACGGCTTATAACAGTCTTTTCTGCTA 2259
Query 2288 CAAATTACTGTGGAACTG-CACAAAATGCGGGAGCAATATTGGTAATTGGTAGAGATATG 2346
|||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 2260 CAAACTACTGTGGAT-TGGCCCAAAATGCGGGAGCAATATTGGTAATTGGTAGAGATATG 2318
Query 2347 GTAATTTATCCTAAGCTGATTCATCCTCACCCTCCTCCCATCTCATCTTCAGAAGAAGAC 2406
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2319 GTCATTTATCCTAAGATGATTCATCCTAACCCTCCTCCCATCTCATCTTCAGAAGAAGAC 2378
Query 2407 TATACAGACAAAGCATGGATGCAGGAGCTGAACATCGAGATGCCGCCTACTCCAGCTCGA 2466
| | ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2379 TCTCCAGACAAAGCAGGGATGCAGGAGCTGAACATCGAGAAACCGCCTACTCCAGCTCGA 2438
Query 2467 GGGGAGTCAAGTGAATAAAGGCAGATATTTGGTATAGA 2504
|||||||| ||||| |||||||||| |||||| |||||
Sbjct 2439 GGGGAGTCCAGTGAGTAAAGGCAGAGATTTGGCATAGA 2476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102881751745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5