BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03457.2
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470321 jgi|Araly1|470321|fgenesh2_kg.1__275__AT1G03457.2 2459 0.0
> Ahg470321 jgi|Araly1|470321|fgenesh2_kg.1__275__AT1G03457.2
Length=1651
Score = 2459 bits (1331), Expect = 0.0
Identities = 1558/1664 (94%), Gaps = 30/1664 (2%)
Strand=Plus/Plus
Query 43 gagagaaagaaATAATGGCGGAGGAGACGATGGAGAACGAAGAGAGGGTGAAGCTGTTCG 102
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 GAGAGAGAGAAACAATGGCGGAGGAGACGATGGAGAACGAAGAGAGGGTGAAGCTGTTCG 65
Query 103 TCGGACAAGTTCCGAAGCACATGACGGAGATTCAGCTCCTCACATTGTTTCGAGAATTCT 162
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 66 TCGGACAAGTTCCGAAGCATATGACGGAGATTCAGCTCCTCACATTGTTTAGCGAATTCT 125
Query 163 CCATCGTCAATGAAGTCAACATCATTAAAGAGAAGACAACACGAGCTCCTCGAGGATGTT 222
|||||||| ||||||||||||||||||| |||||||| ||||||| ||| ||||||||||
Sbjct 126 CCATCGTCGATGAAGTCAACATCATTAAGGAGAAGACTACACGAGTTCCCCGAGGATGTT 185
Query 223 GTTTTCTGACATGTCCTACAAGGGAAGATGCTGACAAGGTGATCAATAGTTTTCATAACA 282
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 186 GTTTTCTGACATGTCCTTCAAGGGAAGAAGCTGACAAGGTGATCAATGGTTTTCATAACA 245
Query 283 AGAAGACATTGCCTGGGGCATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGG 342
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 246 AGAAGACATTGCCTGGGGCATCTAGTCCGTTACAAGTTAAGTATGCAGATGGCGAGAGGG 305
Query 343 AAAGACTAGATGTTCTTGACTGTTCGTGCAATCCAGAGCACAAACTTTTCGTCGGTATGC 402
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 306 AAAGGCTAGATGTTCTTGACTGTTCTTGCAATCCAGAGCACAAACTTTTCGTCGGTATGC 365
Query 403 TTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTA 462
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 366 TTCCAAAGAATGTCTCTGAGACTGAAGTCCAATCCTTATTCTCCGAATACGGAACCATTA 425
Query 463 AGGATCTACAGATTCTAAGAGGGTCTCTACAAACTAGCAAAGGCTGTCTGTTTCTAAAGT 522
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 426 AGGATCTACAGATTCTAAGAGGGTCTCTACAAACTAGCAAGGGCTGTCTGTTTCTAAAGT 485
Query 523 ACGAGTCTAAAGAACAAGCGGTCGCAGCTATGGAAGCCCTCAACGGAAGACATATAATGG 582
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 486 ATGAGTCTAAAGAACAAGCAGTCACAGCTATGGAAGCCCTCAACGGAAGACATATAATGG 545
Query 583 AGGGAGCAAATGTTCCTTTGATTGTTAAATGGGCAGACACAGAAAAGGAAAGACAAGCTC 642
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
Sbjct 546 AGGGAGCAAATGTTCCTTTGATTGTCAAATGGGCAGACACAGAAAGGGAAAGACAAGCCC 605
Query 643 GAAGACTTCTAAAAGTTCAATCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGT 702
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 606 GAAGACTTCAAAAAGTTCAATCTCATGTCTCCAGACCCGATCCGCAAAACCCCTCCATGT 665
Query 703 TTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATGTGCCTG 762
|||| |||||||||||| ||||||||||||| || |||||||||||||||||||| ||||
Sbjct 666 TTGGGGCATTACCTATGGGTTATGTTCCTCCCTATAATGGATATGGCTATCATGTACCTG 725
Query 763 GAACTTATGGCTACATGCTACCACCTATCCAGACTCAACATGCATTTCACAATGTGATTT 822
|||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 726 GAACCTATGGGTACATGCTACCACCTATCCAGACTCAACCTGCATTTCACAATGTGATTT 785
Query 823 CACCTAACCAAGGTAACGGCAGGGCATTGCAGGGAACCGCTTTGACAGAGTCTGTCCCAC 882
|||| |||||||||||||| || ||||||| ||||||||||||||| |||||||||||||
Sbjct 786 CACCGAACCAAGGTAACGGAAGAGCATTGCTGGGAACCGCTTTGACCGAGTCTGTCCCAC 845
Query 883 CACGTTTGGCCCCCCGCAGAAACTTCCCAACGGCTCTTGGAAATTACGGTTACCATGGTC 942
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CACGTTTAGCCGCCCGTAGAAACTTCCCAACGGCTCTTGGAAATTACGGTTACCATGGTC 905
Query 943 TTCAATATCCTATGGCATTTCCTAGAGGGATGATACCTCCTCGCCTTCCTCTAACCACAG 1002
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 906 TTCAATATCCTATGGCATTTCCTAGAGGGATGATACCTCCTCGCCCCCCTCTAACCACAG 965
Query 1003 TTTCACCTGGAATTTCTAATAACGGCACATCGATACCTTCCTCGCTTCAAACAGAAGGAC 1062
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 966 TTTCACCTGGAATTTCTAACAACGGCACATCGATACCTTCCTTGCTTCAAACAGAAGGAC 1025
Query 1063 CAGCAGGTGCGAATCTATTTATTTATAACATACCTCGGGAATTCGAGGATCAAGAACTCG 1122
|||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1026 CAGCAGGTGCGAATCTATTTATTTATAACATACCACGAGAATTCGGGGATCAAGAACTCG 1085
Query 1123 CGGCTACGTTTCAACCTTTTGGTAAGGTTCTAAGCGCCAAGGTGTTTGTAGACAAGGCCA 1182
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CAGCTGCGTTTCAACCTTTTGGTAAGGTTCTAAGCGCCAAGGTGTTTGTAGACAAGGCCA 1145
Query 1183 CTGGTATAAGCAAATGTTTCGGATTCATTAGTTATGACTCACAGGCAGCTGCTCAGAACG 1242
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1146 CTGGTATAAGCAAATGTTTCGGATTCATTAGTTATGACTCACAAGCAGCTGCTCAGAACG 1205
Query 1243 CTATTAACACAATGAACGGTTGCCAATTAAGCGGTAAGAAATTGAAAGTCCAGCTTAAGA 1302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CTATTAATACAATGAACGGTTGCCAATTAAGCGGTAAGAAATTGAAAGTCCAGCTTAAGA 1265
Query 1303 GAGACAACGGTCAACAGCAGCAACAACAACAGAGTAA-AAACCCGTTATTTAACGGTTTA 1361
|||||||||||||||| | ||||| |||||| ||||| ||||||||||||||||
Sbjct 1266 GAGACAACGGTCAACA--A-CAACA------GAGTAACAAACC-GTTATTTAACGGTTTA 1315
Query 1362 TTAAACTCGTAAAAACCACTGACATCTCTTCATCATTAAGAGTTCGCTGTGCGGTTAACG 1421
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1316 TTAAACTCGTAAAAACCACTGACATCTCTTCATCATTAAGAGTTCGC-G--CGGTTAACG 1372
Query 1422 GCAAATCCGGTTGAGACACTAAGATGGATCTTGATGGAACTGGAGAACAAAAAGTTGATG 1481
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct 1373 GCAACTCCGGTTTAGACATTAAGATGGATCTTGATGGAACTGGAGAACAAAAAAT-GTTG 1431
Query 1482 GCCGTAATTAACTAACATTTGCCAAGTCTGATCATGT---G-GG-TC---AGAAATTCTC 1533
||||| ||||||||||||||||||||||||||||||| | || || ||||||||||
Sbjct 1432 GCCGTTATTAACTAACATTTGCCAAGTCTGATCATGTCATGTGGGTCGTCAGAAATTCTC 1491
Query 1534 AATCACTCAGAAAAGCTGTATCTTCATGCAAAAGG-ATTCTCTTCCACTCACTCTTCTTC 1592
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1492 AATCACTCAGAAAAGCTGTATCTTCCTGCAAAAGGGATTCTCCTCCACTCACTCTTCTTC 1551
Query 1593 TATTTTTCTCTTTTCTAAACTTTG--TCAATTTGTGACTTATGTCTATCATTGAAAAGTT 1650
||||||||| ||| ||||| |||| ||| | | || ||||| ||||| |||||||
Sbjct 1552 TATTTTTCT-TTT-CTAAAATTTGCGTCACTACA--ATTTTTGTCTGTCATTCAAAAGTT 1607
Query 1651 CATGTATAAATGTTATGATTATTAACCATTATAATTTCATTTAT 1694
|||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1608 CATGTATAAATGTTATGATTATTAACCATTCTAAATTCATTTAT 1651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63534528660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5