BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03470.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470323 jgi|Araly1|470323|fgenesh2_kg.1__277__AT1G03470.1 1291 0.0
> Ahg470323 jgi|Araly1|470323|fgenesh2_kg.1__277__AT1G03470.1
Length=1099
Score = 1291 bits (699), Expect = 0.0
Identities = 925/1027 (90%), Gaps = 43/1027 (4%)
Strand=Plus/Plus
Query 40 agaagaagaagaaga-agaaACGGCGCCGTTTATTTATTGTCTATCTTGGT-TTTCCAC- 96
||||||||||||||| ||||||||||||||||||||| | | | | || || ||| ||
Sbjct 27 AGAAGAAGAAGAAGAGAGAAACGGCGCCGTTTATTTA-T-T-T-T-TT-GTATTT-TACT 79
Query 97 GCACCGAG---GTT--GTGGAGAAAGCTTTAAGAAGAGTGAAAGATGGTGATGGACTCAT 151
| | | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 GTTTTGTGTTTTTTGAGTGGAGAAAGCTTTAAGAAGAGTGAAAGATGGTGATGGACTCAT 139
Query 152 CAAAATGGTGGTGGATTGGAAATCACAACACTACTAATTTCTCTCCTTGGCTTCATTCTA 211
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 140 CAAAATGGTGGTGGATTGGGAATCACAACACCACAAATTTCTCTCCTTGGCTTCATTCTA 199
Query 212 CTCTCTCTGAATTGGATGAAAAGACAAAGGAAATGCTGAGAGTGATTGATGAGGATGCTG 271
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 200 CTCTCTCTGAATTGGATGAAAAGACAAAAGAAATGCTGAGAGTGATTGATGAGGATGCTG 259
Query 272 ATTCTTTTGCGGCACGAGCTGAGATGTATTACAAGAAAAGGCCCGAGCTTATAGCTATGG 331
||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 260 ATTCTTTCGCCGCACGAGCTGAGATGTATTATAAGAAAAGGCCTGAGCTTATAGCTATGG 319
Query 332 TGGAAGAATTCTACCGTTCACATCGCTCCTTGGCCGAGAGGTACGACTTGTTGAGACCCT 391
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TCGAAGAGTTCTACCGTTCACATCGCTCCTTGGCCGAGAGGTACGACTTGTTGAGACCCT 379
Query 392 CTTCTGTGCATAAACATGGCTCAGACTCGGAGAGTCATGAGAAATCATCAACTTGTGATG 451
|||||||||| ||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 380 CTTCTGTGCACAAACATGGCTC--A----GAGAGTCATGGGAAATCATCAACTTGTGATG 433
Query 452 AGTCTTCTTGGTCTGAGGCTTGTGAGACTCATGAGGAGTATGCGGAGTCTGAAATAGATA 511
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 434 AGTCTTCTTGGTCTGAGGCTTGTGAGACTCATGAAGAGTATGCGGAGTCTGAAATAGATA 493
Query 512 ACGGTGAAAGCAAATGGGTCGATGAAAGTGAAATTGATGGCATTGTTGAGGAAATAGAAC 571
|||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||
Sbjct 494 ACGGTGAAAGCAAATGGGTCGATGAAGGTGAAATCAATGGCATTGTCGAGGAAATGGAAT 553
Query 572 CATCGGAAGTCGTTTACAGTGAAGGTAATGGAAATTCtgagatgatgaa-gatagagata 630
||||| |||||| ||| |||||| ||||||||||| |||||||||||| || |||| ||
Sbjct 554 CATCGCAAGTCGAATACGGTGAAGCTAATGGAAATTATGAGATGATGAAGGA-AGAGCTA 612
Query 631 gagaggctgagagaggagaataaggtttacagtgaaatggtgagagagaaagatgaagag 690
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 613 GAAAGGCTGAGAGAGGAGAATAAGGTTTACAGTGAAATGGTGAGAGAAAAAGATGAAGAG 672
Query 691 aagagagaagCTATAAGGCAAATGAGTGTAGCAATACAAATGCTTAAAGAAGAGAACTCA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AAGAGAGAAGCTATAAGGCAAATGAGTGTAGCAATACAAATGCTTAAAGAAGAGAACTCA 732
Query 751 GAGCTTAAGAAACGTGTTACCAATACTGTTGTTGCAAGGCGTAATAAGGAAGGTGGTGAT 810
||||| ||| |||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct 733 GAGCTAAAGCAACGTGTTAC---TACTGTTGTTGCAAGGCGTAACAAGGTAGGTGGTGAT 789
Query 811 TCTCAGAGGAAGCAACAGATGTGGAAGCCATTTGAGTTTAAGAAGATTAAGCTTGAAGGG 870
||||||||||||| || | | | ||||||||||||||||| ||| |||||
Sbjct 790 TCTCAGAGGAAGC--CA--T-T--------T--GAGTTTAAGAAGATTAATCTTCAAGGG 834
Query 871 TTATGGGGGAAAGGCTTTGGCAATTGGGCTC-TCCCAAACACAGATTCTACTTCCAAAGA 929
|| |||||||||| | || ||||||| || ||||||||||||||||| |||| | |||
Sbjct 835 TTTTGGGGGAAAGTAGTAGGAAATTGGG-TCCTCCCAAACACAGATTCTGCTTCTAGAGA 893
Query 930 GCTCATGACTCTTTAGAGGAGACAGAGAGGTCCGAGTGATCAAGAACAGAAACTGAGGAA 989
|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 894 GCTCATGACTCTTTAGAGAAAACAGAGAGGTCTGAGTGATCAAGAACAGAAACTGAGGAA 953
Query 990 CTTTCTCTAAATATCTTTGTACTCTGTGATAGGTAGGGTATACTCTCAACTAGTTAGCGT 1049
||||||||||| ||||||||||||||||| | ||||||||||||||||| | ||||| ||
Sbjct 954 CTTTCTCTAAACATCTTTGTACTCTGTGACAAGTAGGGTATACTCTCAAGTGGTTAGTGT 1013
Query 1050 AAGGTAT 1056
|||||||
Sbjct 1014 AAGGTAT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5