BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03470.1 Length=1247 Score E Sequences producing significant alignments: (Bits) Value Ahg470323 jgi|Araly1|470323|fgenesh2_kg.1__277__AT1G03470.1 1291 0.0 > Ahg470323 jgi|Araly1|470323|fgenesh2_kg.1__277__AT1G03470.1 Length=1099 Score = 1291 bits (699), Expect = 0.0 Identities = 925/1027 (90%), Gaps = 43/1027 (4%) Strand=Plus/Plus Query 40 agaagaagaagaaga-agaaACGGCGCCGTTTATTTATTGTCTATCTTGGT-TTTCCAC- 96 ||||||||||||||| ||||||||||||||||||||| | | | | || || ||| || Sbjct 27 AGAAGAAGAAGAAGAGAGAAACGGCGCCGTTTATTTA-T-T-T-T-TT-GTATTT-TACT 79 Query 97 GCACCGAG---GTT--GTGGAGAAAGCTTTAAGAAGAGTGAAAGATGGTGATGGACTCAT 151 | | | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 GTTTTGTGTTTTTTGAGTGGAGAAAGCTTTAAGAAGAGTGAAAGATGGTGATGGACTCAT 139 Query 152 CAAAATGGTGGTGGATTGGAAATCACAACACTACTAATTTCTCTCCTTGGCTTCATTCTA 211 ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 140 CAAAATGGTGGTGGATTGGGAATCACAACACCACAAATTTCTCTCCTTGGCTTCATTCTA 199 Query 212 CTCTCTCTGAATTGGATGAAAAGACAAAGGAAATGCTGAGAGTGATTGATGAGGATGCTG 271 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 200 CTCTCTCTGAATTGGATGAAAAGACAAAAGAAATGCTGAGAGTGATTGATGAGGATGCTG 259 Query 272 ATTCTTTTGCGGCACGAGCTGAGATGTATTACAAGAAAAGGCCCGAGCTTATAGCTATGG 331 ||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 260 ATTCTTTCGCCGCACGAGCTGAGATGTATTATAAGAAAAGGCCTGAGCTTATAGCTATGG 319 Query 332 TGGAAGAATTCTACCGTTCACATCGCTCCTTGGCCGAGAGGTACGACTTGTTGAGACCCT 391 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TCGAAGAGTTCTACCGTTCACATCGCTCCTTGGCCGAGAGGTACGACTTGTTGAGACCCT 379 Query 392 CTTCTGTGCATAAACATGGCTCAGACTCGGAGAGTCATGAGAAATCATCAACTTGTGATG 451 |||||||||| ||||||||||| | |||||||||| |||||||||||||||||||| Sbjct 380 CTTCTGTGCACAAACATGGCTC--A----GAGAGTCATGGGAAATCATCAACTTGTGATG 433 Query 452 AGTCTTCTTGGTCTGAGGCTTGTGAGACTCATGAGGAGTATGCGGAGTCTGAAATAGATA 511 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 434 AGTCTTCTTGGTCTGAGGCTTGTGAGACTCATGAAGAGTATGCGGAGTCTGAAATAGATA 493 Query 512 ACGGTGAAAGCAAATGGGTCGATGAAAGTGAAATTGATGGCATTGTTGAGGAAATAGAAC 571 |||||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||| Sbjct 494 ACGGTGAAAGCAAATGGGTCGATGAAGGTGAAATCAATGGCATTGTCGAGGAAATGGAAT 553 Query 572 CATCGGAAGTCGTTTACAGTGAAGGTAATGGAAATTCtgagatgatgaa-gatagagata 630 ||||| |||||| ||| |||||| ||||||||||| |||||||||||| || |||| || Sbjct 554 CATCGCAAGTCGAATACGGTGAAGCTAATGGAAATTATGAGATGATGAAGGA-AGAGCTA 612 Query 631 gagaggctgagagaggagaataaggtttacagtgaaatggtgagagagaaagatgaagag 690 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 613 GAAAGGCTGAGAGAGGAGAATAAGGTTTACAGTGAAATGGTGAGAGAAAAAGATGAAGAG 672 Query 691 aagagagaagCTATAAGGCAAATGAGTGTAGCAATACAAATGCTTAAAGAAGAGAACTCA 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673 AAGAGAGAAGCTATAAGGCAAATGAGTGTAGCAATACAAATGCTTAAAGAAGAGAACTCA 732 Query 751 GAGCTTAAGAAACGTGTTACCAATACTGTTGTTGCAAGGCGTAATAAGGAAGGTGGTGAT 810 ||||| ||| |||||||||| ||||||||||||||||||||| |||| |||||||||| Sbjct 733 GAGCTAAAGCAACGTGTTAC---TACTGTTGTTGCAAGGCGTAACAAGGTAGGTGGTGAT 789 Query 811 TCTCAGAGGAAGCAACAGATGTGGAAGCCATTTGAGTTTAAGAAGATTAAGCTTGAAGGG 870 ||||||||||||| || | | | ||||||||||||||||| ||| ||||| Sbjct 790 TCTCAGAGGAAGC--CA--T-T--------T--GAGTTTAAGAAGATTAATCTTCAAGGG 834 Query 871 TTATGGGGGAAAGGCTTTGGCAATTGGGCTC-TCCCAAACACAGATTCTACTTCCAAAGA 929 || |||||||||| | || ||||||| || ||||||||||||||||| |||| | ||| Sbjct 835 TTTTGGGGGAAAGTAGTAGGAAATTGGG-TCCTCCCAAACACAGATTCTGCTTCTAGAGA 893 Query 930 GCTCATGACTCTTTAGAGGAGACAGAGAGGTCCGAGTGATCAAGAACAGAAACTGAGGAA 989 |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| Sbjct 894 GCTCATGACTCTTTAGAGAAAACAGAGAGGTCTGAGTGATCAAGAACAGAAACTGAGGAA 953 Query 990 CTTTCTCTAAATATCTTTGTACTCTGTGATAGGTAGGGTATACTCTCAACTAGTTAGCGT 1049 ||||||||||| ||||||||||||||||| | ||||||||||||||||| | ||||| || Sbjct 954 CTTTCTCTAAACATCTTTGTACTCTGTGACAAGTAGGGTATACTCTCAAGTGGTTAGTGT 1013 Query 1050 AAGGTAT 1056 ||||||| Sbjct 1014 AAGGTAT 1020 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46586204574 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5