BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03475.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919013 jgi|Araly1|919013|scaffold_100294.1 1980 0.0
Ahg943395 jgi|Araly1|943395|scaffold_603939.1 961 0.0
> Ahg919013 jgi|Araly1|919013|scaffold_100294.1
Length=1204
Score = 1980 bits (1072), Expect = 0.0
Identities = 1162/1205 (96%), Gaps = 8/1205 (1%)
Strand=Plus/Plus
Query 16 AAATCCAAATTCGGATCAAACATGGcttctcactcgtcgactctcctctcttctcctact 75
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCC-AATTCGGATCAAACATGGCTTCTCACTCGTCGACTCTCCTCTCTTCTCCTACT 59
Query 76 ttcgctcctttctcctctcatcgtcttcATTATTCTCCCAATCCCTCTACTCTCAGATTC 135
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 TTCGCTCCCTTCTCCTCTCATCGTCTTCATTATTCTCCCAATCTCTCTACTCTCAGATTC 119
Query 136 TCCCGTCCAATCAGAAATAAACCTAATCTCGCCTTGCGATGTTCAGTCTCAATTGAGAAA 195
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 120 TCCCGTCCAATCAGAAATAAACCCAATCTCGCCTTGCGATGTTCAGTCTCAATCGAGAAA 179
Query 196 GAAGTTCCCGAAACTGAACGACCCTTTA-CTTTCCTTAGGGATTCTGATGACGTCACTCC 254
|||||||||||||||||||||||||||| |||| || |||||||||||||||| |||| |
Sbjct 180 GAAGTTCCCGAAACTGAACGACCCTTTACCTTT-CTCAGGGATTCTGATGACGCCACT-C 237
Query 255 A-tcttcttc-t-t-cttcttcCGTCAGGGCTCGTTTCGAGACTATGATTAGGGCTGCTC 310
| |||||||| | | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 ACTCTTCTTCTTCTACTTCTTCCGTCAGGGCTCGTTTCGAGACTATGATTAGGGCAGCTC 297
Query 311 AAGACAGTGTTTGTGATGCAATTGAAGCTATAGAAGGCGGTCCTAAGTTTAAAGAAGATG 370
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 298 AAGACAGTGTCTGTGATGCAATTGAAGCTATCGAAGGCGGTCCTAAGTTTAAAGAAGATG 357
Query 371 TTTGGTCTCGACCTGGTGGTGGCGGTGGAATCAGTCGTGTGTTGCAGGACGGGAATGTCT 430
|||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||
Sbjct 358 TTTGGTCTCGACCTGGTGGTGGAGGTGGAATCAGTCGTGTTTTGCAGGATGGTAATGTCT 417
Query 431 TTGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGAAGCTTATA 490
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 418 TTGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTACGGTGTTATGCCTCCTGAAGCTTATA 477
Query 491 GAGCTGCAAAGGGCTCAGCTTCTGATCAGAAACCTGGTCCTGTTCCGTTCTTCGCTGCTG 550
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 478 GAGCTGCAAAAGGCTCAGCTTCAGATCAGAAACCTGGTCCGGTTCCGTTCTTCGCTGCCG 537
Query 551 GAGTCAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACCCTGCATTTCAATTATC 610
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 GAGTTAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACTCTGCATTTCAATTATC 597
Query 611 GCTATTTCGAGACAGATGCTCCAAAGGATGTTCCTGGAGCTCCAAGGCAATGGTGGTTTG 670
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 GTTATTTCGAGACGGATGCTCCAAAGGATGTTCCTGGAGCTCCGAGGCAATGGTGGTTTG 657
Query 671 GTGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAAGCATTTCCATT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAAGCATTTCCATT 717
Query 731 CGATTCAAAAGCAAGCCTGTGACAAATTTGACCCTTCCTTCTATCCCCGATTCAAGAAGT 790
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 CGATTCAAAAGCAAGCCTGTGACAAATTCGACCCTTCCTTCTATCCCCGATTCAAGAAGT 777
Query 791 GGTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGACTTGGAGGGATAT 850
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 GGTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGACTAGGAGGGATAT 837
Query 851 TTTTTGATGATCTTAATGACTATGATCAGGAAATGCTTCTGTCATTTGCCACTGAATGCG 910
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 838 TTTTTGATGATCTTAATGACTATGATCAGGAAATGCTTTTGTCATTTGCCACTGAATGTG 897
Query 911 CAAACTCAGTGGTGCCGGCTTATATACCTATAGTAGAGAAAAGGAAAGACATGGAATTTA 970
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CAAACTCAGTGGTACCGGCTTATATACCTATAGTAGAGAAAAGGAAAGACATGGAATTTA 957
Query 971 CAGAGCAGCACAAGGCATGGCAACAGTTGCGACGAGGGCGATATGTCGAATTCAACTTGG 1030
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 CAGAGCAGCACAAGGCATGGCAACAGTTGCGAAGAGGGCGATATGTCGAATTCAACTTGG 1017
Query 1031 TATATGATCGGGGAACGACATTTGGTCTGAAGACAGGAGGACGAATAGAGAGCATTCTCG 1090
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGACGAATAGAGAGCATTCTCG 1077
Query 1091 TCTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGGAAGAGGGGACCGAAG 1150
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1078 TCTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGGAAGAGGGAACTGAAG 1137
Query 1151 AGTGGAAGCTATTGGATGCTTGCATCAACCCGAAGGAGTGGATCTAGCCTGTGTTTCCCA 1210
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1138 AGTGGAAGCTATTGGATGCTTGTATCAACCCAAAGGAGTGGATCTAGCCTGTGTTTCCGA 1197
Query 1211 TTGTT 1215
|||||
Sbjct 1198 TTGTT 1202
> Ahg943395 jgi|Araly1|943395|scaffold_603939.1
Length=1145
Score = 961 bits (520), Expect = 0.0
Identities = 778/903 (86%), Gaps = 16/903 (2%)
Strand=Plus/Plus
Query 304 GCTGCTCAAGACAGTGTTTGTGATGCAATTGAAGCTA-TAGAAGGCGGTCCTAAGTTTAA 362
|||||||| || | || ||||| || |||||||| | | ||||| |||||||| || ||
Sbjct 231 GCTGCTCAGGATAAAGTCTGTGAAGCCATTGAAGC-AGTTGAAGGAGGTCCTAAATTCAA 289
Query 363 AGAAGATGTTTGGTCTCGACCTGGTGGTGGCGGTGGAATCAGTCGTGTGTTGCAGGACGG 422
|||||||||||||| ||||| ||||| ||||| |||||||| ||||| ||||| || ||
Sbjct 290 GGAAGATGTTTGGTCCCGACCCGGTGGAGGCGGCGGAATCAGCCGTGTTTTGCAAGATGG 349
Query 423 GAATGTCTTTGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGA 482
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 350 AAATGTATGGGAGAAAGCTGGAGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGA 409
Query 483 AGCTTATAGAGCTGC-AAAGG-GCTCAGCTTCTGATCAGAAACCTGGTCCTGTTCCGTTC 540
||||||||||||||| |||| || || | |||| || |||||||| || ||||||||
Sbjct 410 AGCTTATAGAGCTGCTAAAGCTGC-CA-CGGCTGAGCAAAAACCTGGCCCGGTTCCGTTT 467
Query 541 TTCGCTGCTGG-AGTCAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACCCTGCA 599
|| || || || | | ||||||||||||||||| |||||||||||||| || || |||||
Sbjct 468 TTTGCCGCCGGTATT-AGCTCGGTTTTGCATCCTAAGAACCCTTTTGCTCCGACTCTGCA 526
Query 600 TTTCAATTATCGCTATTTCGAGACAGATGCTCCAAAGGATGTTCCTGGAGCTCCAAGGCA 659
||||||||| || || |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 527 TTTCAATTACCGTTACTTCGAGACCGATGCTCCAAAGGATGTCCCTGGAGCTCCAAGGCA 586
Query 660 ATGGTGGTTTGGTGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAA 719
||||||||| |||||||| ||||||||||| |||||||||||||| ||||| || |||||
Sbjct 587 ATGGTGGTTCGGTGGTGGGACTGATTTCACACCTGCTTACATCTTCGAAGAGGACGTCAA 646
Query 720 GCATTTCCATTCGATTCAAAAGCAAGCCTGTGACAAATTTGACCCTTCCTTCTATCCC-C 778
|||||| |||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |
Sbjct 647 GCATTTTCATTCGGTTCAAAAACAAGCCTGTGATAAATTCGATCCGTCCTTCTA-CCCTC 705
Query 779 GATTCAAGAAGTGGTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGAC 838
| |||||||| ||||||||||||||||||||||| ||||||||||| || || ||||| |
Sbjct 706 GGTTCAAGAAATGGTGTGATGACTACTTTTACATTAAGCACCGTGACGAAAGGCGAGGGC 765
Query 839 TTGGAGGGATATTTTTTGATGATCTT-AATGACTATGATCAGGAAATGCTTCTGTCATTT 897
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 766 TTGGAGGGATATTTTTTGATGAT-TTGAATGACTATGATCAGGAGATGCTTCTGTCATTT 824
Query 898 GCCACTGAATGCGCAAACTCAGTGGTGCCGGCTTATATACCTATAGTAGAGAAAAGGAAA 957
||||||||||| |||| ||||||| | || ||||||||||| |||||||| |||| | ||
Sbjct 825 GCCACTGAATGTGCAAGCTCAGTGATACCAGCTTATATACCCATAGTAGA-AAAACGTAA 883
Query 958 G-ACATGGAATTTA-CAGAGCAGCACAAGGCATGGCAACAGTTGCGACGAGGGCGATATG 1015
| ||| | ||||| | ||||| ||||||| ||||||||| |||||| | ||||||||||
Sbjct 884 GGACACGCCATTTAAC-GAGCAACACAAGGAATGGCAACAATTGCGAAGGGGGCGATATG 942
Query 1016 TCGAATTCAACTTGGTATATGATCGGGGAACGACATTTGGTCTGAAGACAGGAGGACGAA 1075
| |||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| ||||
Sbjct 943 TTGAATTCAACTTGGTGTATGACCGTGGAACAACATTTGGTCTGAAGACCGGAGGGCGAA 1002
Query 1076 TAGAGAGCATTCTCGTCTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGG 1135
||||||| || || |||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1003 TAGAGAGTATCCTTGTCTCTCTTCCGCTATCCGCAAGATGGGAATATGACCATAAACCAG 1062
Query 1136 AAGAGGGGACCGAAGAGTGGAAGCTATTGGATGCTTGCATCAACCCGAAGGAGTGGATCT 1195
|||| || || || || ||||| ||||| |||||||| ||||| || || |||||| | |
Sbjct 1063 AAGAAGGAACTGAGGAATGGAAACTATTAGATGCTTGTATCAATCCAAAAGAGTGGCTTT 1122
Query 1196 AGC 1198
|||
Sbjct 1123 AGC 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5