BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03475.1 Length=1448 Score E Sequences producing significant alignments: (Bits) Value Ahg919013 jgi|Araly1|919013|scaffold_100294.1 1980 0.0 Ahg943395 jgi|Araly1|943395|scaffold_603939.1 961 0.0 > Ahg919013 jgi|Araly1|919013|scaffold_100294.1 Length=1204 Score = 1980 bits (1072), Expect = 0.0 Identities = 1162/1205 (96%), Gaps = 8/1205 (1%) Strand=Plus/Plus Query 16 AAATCCAAATTCGGATCAAACATGGcttctcactcgtcgactctcctctcttctcctact 75 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATCC-AATTCGGATCAAACATGGCTTCTCACTCGTCGACTCTCCTCTCTTCTCCTACT 59 Query 76 ttcgctcctttctcctctcatcgtcttcATTATTCTCCCAATCCCTCTACTCTCAGATTC 135 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 60 TTCGCTCCCTTCTCCTCTCATCGTCTTCATTATTCTCCCAATCTCTCTACTCTCAGATTC 119 Query 136 TCCCGTCCAATCAGAAATAAACCTAATCTCGCCTTGCGATGTTCAGTCTCAATTGAGAAA 195 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 120 TCCCGTCCAATCAGAAATAAACCCAATCTCGCCTTGCGATGTTCAGTCTCAATCGAGAAA 179 Query 196 GAAGTTCCCGAAACTGAACGACCCTTTA-CTTTCCTTAGGGATTCTGATGACGTCACTCC 254 |||||||||||||||||||||||||||| |||| || |||||||||||||||| |||| | Sbjct 180 GAAGTTCCCGAAACTGAACGACCCTTTACCTTT-CTCAGGGATTCTGATGACGCCACT-C 237 Query 255 A-tcttcttc-t-t-cttcttcCGTCAGGGCTCGTTTCGAGACTATGATTAGGGCTGCTC 310 | |||||||| | | |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 238 ACTCTTCTTCTTCTACTTCTTCCGTCAGGGCTCGTTTCGAGACTATGATTAGGGCAGCTC 297 Query 311 AAGACAGTGTTTGTGATGCAATTGAAGCTATAGAAGGCGGTCCTAAGTTTAAAGAAGATG 370 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 298 AAGACAGTGTCTGTGATGCAATTGAAGCTATCGAAGGCGGTCCTAAGTTTAAAGAAGATG 357 Query 371 TTTGGTCTCGACCTGGTGGTGGCGGTGGAATCAGTCGTGTGTTGCAGGACGGGAATGTCT 430 |||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||| Sbjct 358 TTTGGTCTCGACCTGGTGGTGGAGGTGGAATCAGTCGTGTTTTGCAGGATGGTAATGTCT 417 Query 431 TTGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGAAGCTTATA 490 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 418 TTGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTACGGTGTTATGCCTCCTGAAGCTTATA 477 Query 491 GAGCTGCAAAGGGCTCAGCTTCTGATCAGAAACCTGGTCCTGTTCCGTTCTTCGCTGCTG 550 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct 478 GAGCTGCAAAAGGCTCAGCTTCAGATCAGAAACCTGGTCCGGTTCCGTTCTTCGCTGCCG 537 Query 551 GAGTCAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACCCTGCATTTCAATTATC 610 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 538 GAGTTAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACTCTGCATTTCAATTATC 597 Query 611 GCTATTTCGAGACAGATGCTCCAAAGGATGTTCCTGGAGCTCCAAGGCAATGGTGGTTTG 670 | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 598 GTTATTTCGAGACGGATGCTCCAAAGGATGTTCCTGGAGCTCCGAGGCAATGGTGGTTTG 657 Query 671 GTGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAAGCATTTCCATT 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GTGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAAGCATTTCCATT 717 Query 731 CGATTCAAAAGCAAGCCTGTGACAAATTTGACCCTTCCTTCTATCCCCGATTCAAGAAGT 790 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 718 CGATTCAAAAGCAAGCCTGTGACAAATTCGACCCTTCCTTCTATCCCCGATTCAAGAAGT 777 Query 791 GGTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGACTTGGAGGGATAT 850 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 778 GGTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGACTAGGAGGGATAT 837 Query 851 TTTTTGATGATCTTAATGACTATGATCAGGAAATGCTTCTGTCATTTGCCACTGAATGCG 910 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 838 TTTTTGATGATCTTAATGACTATGATCAGGAAATGCTTTTGTCATTTGCCACTGAATGTG 897 Query 911 CAAACTCAGTGGTGCCGGCTTATATACCTATAGTAGAGAAAAGGAAAGACATGGAATTTA 970 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 CAAACTCAGTGGTACCGGCTTATATACCTATAGTAGAGAAAAGGAAAGACATGGAATTTA 957 Query 971 CAGAGCAGCACAAGGCATGGCAACAGTTGCGACGAGGGCGATATGTCGAATTCAACTTGG 1030 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 958 CAGAGCAGCACAAGGCATGGCAACAGTTGCGAAGAGGGCGATATGTCGAATTCAACTTGG 1017 Query 1031 TATATGATCGGGGAACGACATTTGGTCTGAAGACAGGAGGACGAATAGAGAGCATTCTCG 1090 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGACGAATAGAGAGCATTCTCG 1077 Query 1091 TCTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGGAAGAGGGGACCGAAG 1150 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1078 TCTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGGAAGAGGGAACTGAAG 1137 Query 1151 AGTGGAAGCTATTGGATGCTTGCATCAACCCGAAGGAGTGGATCTAGCCTGTGTTTCCCA 1210 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | Sbjct 1138 AGTGGAAGCTATTGGATGCTTGTATCAACCCAAAGGAGTGGATCTAGCCTGTGTTTCCGA 1197 Query 1211 TTGTT 1215 ||||| Sbjct 1198 TTGTT 1202 > Ahg943395 jgi|Araly1|943395|scaffold_603939.1 Length=1145 Score = 961 bits (520), Expect = 0.0 Identities = 778/903 (86%), Gaps = 16/903 (2%) Strand=Plus/Plus Query 304 GCTGCTCAAGACAGTGTTTGTGATGCAATTGAAGCTA-TAGAAGGCGGTCCTAAGTTTAA 362 |||||||| || | || ||||| || |||||||| | | ||||| |||||||| || || Sbjct 231 GCTGCTCAGGATAAAGTCTGTGAAGCCATTGAAGC-AGTTGAAGGAGGTCCTAAATTCAA 289 Query 363 AGAAGATGTTTGGTCTCGACCTGGTGGTGGCGGTGGAATCAGTCGTGTGTTGCAGGACGG 422 |||||||||||||| ||||| ||||| ||||| |||||||| ||||| ||||| || || Sbjct 290 GGAAGATGTTTGGTCCCGACCCGGTGGAGGCGGCGGAATCAGCCGTGTTTTGCAAGATGG 349 Query 423 GAATGTCTTTGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGA 482 ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 350 AAATGTATGGGAGAAAGCTGGAGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGA 409 Query 483 AGCTTATAGAGCTGC-AAAGG-GCTCAGCTTCTGATCAGAAACCTGGTCCTGTTCCGTTC 540 ||||||||||||||| |||| || || | |||| || |||||||| || |||||||| Sbjct 410 AGCTTATAGAGCTGCTAAAGCTGC-CA-CGGCTGAGCAAAAACCTGGCCCGGTTCCGTTT 467 Query 541 TTCGCTGCTGG-AGTCAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACCCTGCA 599 || || || || | | ||||||||||||||||| |||||||||||||| || || ||||| Sbjct 468 TTTGCCGCCGGTATT-AGCTCGGTTTTGCATCCTAAGAACCCTTTTGCTCCGACTCTGCA 526 Query 600 TTTCAATTATCGCTATTTCGAGACAGATGCTCCAAAGGATGTTCCTGGAGCTCCAAGGCA 659 ||||||||| || || |||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 527 TTTCAATTACCGTTACTTCGAGACCGATGCTCCAAAGGATGTCCCTGGAGCTCCAAGGCA 586 Query 660 ATGGTGGTTTGGTGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAA 719 ||||||||| |||||||| ||||||||||| |||||||||||||| ||||| || ||||| Sbjct 587 ATGGTGGTTCGGTGGTGGGACTGATTTCACACCTGCTTACATCTTCGAAGAGGACGTCAA 646 Query 720 GCATTTCCATTCGATTCAAAAGCAAGCCTGTGACAAATTTGACCCTTCCTTCTATCCC-C 778 |||||| |||||| ||||||| ||||||||||| ||||| || || |||||||| ||| | Sbjct 647 GCATTTTCATTCGGTTCAAAAACAAGCCTGTGATAAATTCGATCCGTCCTTCTA-CCCTC 705 Query 779 GATTCAAGAAGTGGTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGAC 838 | |||||||| ||||||||||||||||||||||| ||||||||||| || || ||||| | Sbjct 706 GGTTCAAGAAATGGTGTGATGACTACTTTTACATTAAGCACCGTGACGAAAGGCGAGGGC 765 Query 839 TTGGAGGGATATTTTTTGATGATCTT-AATGACTATGATCAGGAAATGCTTCTGTCATTT 897 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 766 TTGGAGGGATATTTTTTGATGAT-TTGAATGACTATGATCAGGAGATGCTTCTGTCATTT 824 Query 898 GCCACTGAATGCGCAAACTCAGTGGTGCCGGCTTATATACCTATAGTAGAGAAAAGGAAA 957 ||||||||||| |||| ||||||| | || ||||||||||| |||||||| |||| | || Sbjct 825 GCCACTGAATGTGCAAGCTCAGTGATACCAGCTTATATACCCATAGTAGA-AAAACGTAA 883 Query 958 G-ACATGGAATTTA-CAGAGCAGCACAAGGCATGGCAACAGTTGCGACGAGGGCGATATG 1015 | ||| | ||||| | ||||| ||||||| ||||||||| |||||| | |||||||||| Sbjct 884 GGACACGCCATTTAAC-GAGCAACACAAGGAATGGCAACAATTGCGAAGGGGGCGATATG 942 Query 1016 TCGAATTCAACTTGGTATATGATCGGGGAACGACATTTGGTCTGAAGACAGGAGGACGAA 1075 | |||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| |||| Sbjct 943 TTGAATTCAACTTGGTGTATGACCGTGGAACAACATTTGGTCTGAAGACCGGAGGGCGAA 1002 Query 1076 TAGAGAGCATTCTCGTCTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGG 1135 ||||||| || || |||||||||||||| || |||||||||||||||||||||||||| | Sbjct 1003 TAGAGAGTATCCTTGTCTCTCTTCCGCTATCCGCAAGATGGGAATATGACCATAAACCAG 1062 Query 1136 AAGAGGGGACCGAAGAGTGGAAGCTATTGGATGCTTGCATCAACCCGAAGGAGTGGATCT 1195 |||| || || || || ||||| ||||| |||||||| ||||| || || |||||| | | Sbjct 1063 AAGAAGGAACTGAGGAATGGAAACTATTAGATGCTTGTATCAATCCAAAAGAGTGGCTTT 1122 Query 1196 AGC 1198 ||| Sbjct 1123 AGC 1125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54164328390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5