BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03490.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311447 jgi|Araly1|311447|fgenesh1_pm.C_scaffold_1000227 599 1e-170
Ahg919069 jgi|Araly1|919069|scaffold_100350.1 353 1e-96
> Ahg311447 jgi|Araly1|311447|fgenesh1_pm.C_scaffold_1000227
Length=816
Score = 599 bits (324), Expect = 1e-170
Identities = 685/846 (81%), Gaps = 77/846 (9%)
Strand=Plus/Plus
Query 1 ATGAAGAT-TCTTCCGGTTGGATCACGGTTT-TGTCCGACGGATCTAGGGTTGGTGAGGC 58
|||||| | | |||||||||||||||||||| | ||| | |||||||| |||||||||
Sbjct 1 ATGAAG-TCTTTTCCGGTTGGATCACGGTTTCT-TCCTAAAGATCTAGGTTTGGTGAGGT 58
Query 59 TTTATCTTCGAAACAAGGTGGAGAGAAATCAGAGCAGTTTCATAACAACTATGGACATCC 118
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 59 TTTATCTTCGAAACATGGTGGAGAGGAAGCAGAGCAGTTTCATAACAACTATGGACGTCT 118
Query 119 ACCA-AGACTACCCTTGGCTTCTTCCTCACGTAAACAATCCTTTGTTCAATAACAACGAG 177
| || ||| | || ||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 119 A-CATGGACGAGCCGTGGCTTCTTCCTCACGTAAACAATCCTCTGTTCAAGAACAAGGAG 177
Query 178 TGGTACTACTTTGTTCCGCTTACTGAACGAGGTGGCAAGATATTAAGCGTACACCGGAAG 237
|||||||||||||||| ||| ||| ||||| | | | | |||||| || ||||||
Sbjct 178 TGGTACTACTTTGTTCAGCTGACTAAACGA-----C--G-T-TCAAGCGTGCAACGGAAG 228
Query 238 GTAGCCGCAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAAAAGAG 297
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 229 GTACCCGGAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAGAAGAG 288
Query 298 ATCAAGGACGGACACATGCAAAAGGGTGATGGGTTACGAGCAAGTGATGACCTCCAAAAG 357
||||||||||| |||| | ||| | || | | | | ||| | | |||||
Sbjct 289 ATCAAGGACGG--ACAT-C-AAA--G-GA---G-T----G--A-TGA-G--CAGCAAAA- 326
Query 358 GTT-GTCTTGTGTCGGATCCGATACAAGAAAGAGGCGAACGTCAACGAGTTTGGACTCGT 416
||| ||||||||||||||||||||||||||| || ||| |||||| || || ||| |||
Sbjct 327 GTTGGTCTTGTGTCGGATCCGATACAAGAAACAGAAGAAGGTCAACAAGATTAGACGCGT 386
Query 417 TAACCATCAGGCTCATCAGACTCAGGATGCTTTAACCGGTTTTGCTGATCAGCTTGAGAT 476
||| ||||| |||||||||||||||| || |||||||||||| ||||| |||||||||
Sbjct 387 TAATCATCAAGCTCATCAGACTCAGGCTGATTTAACCGGTTTAACTGATGAGCTTGAGAA 446
Query 477 GATGCTAGAGGGACAAGAAGACCGTGAGCAGAAAGAAGAGGCTGATTTAACCGGTTTTGC 536
||||| ||||||||||||||| |||||| || ||||||||| ||| ||||||| |||| |
Sbjct 447 GATGCCAGAGGGACAAGAAGATCGTGAGGAGCAAGAAGAGGTTGACTTAACCGATTTTCC 506
Query 537 TGAT-AGCCTTGAGACGATGCTAGAGGGACAAGAAGATCATGAGCAGCCAGAAGATGCTG 595
|||| || |||||||||||||||||||||||||||||| |||||| | | |||| ||||
Sbjct 507 TGATGAG-CTTGAGACGATGCTAGAGGGACAAGAAGATTGTGAGCAACAACAAGAGGCTG 565
Query 596 ATTTAACCGGTTTTGCTGAT-AGCCTTGAGACGATGCTAGAGGGACATGAAGATCGTGAG 654
| |||||||||||| ||||| | ||| ||| ||||| | | | | | ||| | |||
Sbjct 566 AGTTAACCGGTTTTTCTGATGACCCT-GAGTCGATGTT-G-----C-T-A-GAT-G-GAG 613
Query 655 CAGCCAGAAGAGGCTGAATTAACCGTTACTcaacaacaacaacaacaacaacaacaacaa 714
| |||||| | | | | | ||||| | |||||||||||||||||||| ||| ||
Sbjct 614 -A---AGAAGAT-C-G--TGA-C-GTTAC-C--CAACAACAACAACAACAACAGCAAGAA 660
Query 715 caacGTCAAGAAGATTGTGACGTTACTCAAG-AGCAAGAAAAAGATGATGTGATGGTACT 773
|| | | || | | || || | | |||||||| | |||||| ||||||| ||
Sbjct 661 GAA-G--A-GAT-ACCGCAACA--AC--A-GCAGCAAGAAGATGATGATATGATGGTGCT 710
Query 774 GATAAACAATCCTAATGATGCCCTCGCATTGGGGAATTATGAGATTATTGATCTAACTAG 833
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 711 GATGGACAATCCTAATGATGCCCTCGCATTGGGGAATTATGAGTTTGTTGATCTAACTTG 770
Query 834 GGTTGA 839
||||||
Sbjct 771 GGTTGA 776
> Ahg919069 jgi|Araly1|919069|scaffold_100350.1
Length=1120
Score = 353 bits (191), Expect = 1e-96
Identities = 295/342 (86%), Gaps = 19/342 (6%)
Strand=Plus/Plus
Query 1 ATGAAGAT-TCTTCCGGTTGGATCACGGTTT-TGTCCGACGGATCTAGGGTTGGTGAGGC 58
|||||| | | |||||||||||||||||||| | ||| | |||||||| |||||||||
Sbjct 27 ATGAAG-TCTTTTCCGGTTGGATCACGGTTTCT-TCCTAAAGATCTAGGTTTGGTGAGGT 84
Query 59 TTTATCTTCGAAACAAGGTGGAGAGAAATCAGAGCAGTTTCATAACAACTATGGACATCC 118
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 85 TTTATCTTCGAAACATGGTGGAGAGGAAGCAGAGCAGTTTCATAACAACTATGGACGTCT 144
Query 119 ACCA-AGACTACCCTTGGCTTCTTCCTCACGTAAACAATCCTTTGTTCAATAACAACGAG 177
| || ||| | || ||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 145 A-CATGGACGAGCCGTGGCTTCTTCCTCACGTAAACAATCCTCTGTTCAAGAACAAGGAG 203
Query 178 TGGTACTACTTTGTTCCGCTTACTGAACGAGGTGGCAAGATATTAAGCGTACACCGGAAG 237
|||||||||||||||| ||| ||| ||||| | | | | |||||| || ||||||
Sbjct 204 TGGTACTACTTTGTTCAGCTGACTAAACGA-----C--G-T-TCAAGCGTGCAACGGAAG 254
Query 238 GTAGCCGCAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAAAAGAG 297
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 255 GTACCCGGAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAGAAGAG 314
Query 298 ATCAAGGACGGACACATGCAAAAGGGTGATGGGTTACGAGCA 339
|||||||||||||| | |||| |||||||||||||| ||||
Sbjct 315 ATCAAGGACGGACA--T-CAAA-GGGTGATGGGTTACCAGCA 352
Score = 209 bits (113), Expect = 2e-53
Identities = 185/219 (84%), Gaps = 7/219 (3%)
Strand=Plus/Plus
Query 440 AGGATGCTTTAACCGGTTTTGCTGATCAGCTTGAGATGATGCTAGAGGGACAAGAAGACC 499
||| || |||||||||||| ||||| ||||||||| ||||| ||||||||||||||| |
Sbjct 583 AGGCTGATTTAACCGGTTTAACTGATGAGCTTGAGAAGATGCCAGAGGGACAAGAAGATC 642
Query 500 GTGAGCAGAAAGAAGAGGCTGATTTAACCGGTTTTGCTGAT-AGCCTTGAGACGATGCTA 558
||||| || ||||||||| ||| ||||||| |||| ||||| || |||||||||||||||
Sbjct 643 GTGAGGAGCAAGAAGAGGTTGACTTAACCGATTTTCCTGATGAG-CTTGAGACGATGCTA 701
Query 559 GAGGGACAAGAAGATCATGAGCAGCCAGAAGATGCTGATTTAACCGGTTTTGCTGAT-AG 617
||||||||||||||| |||||| | | |||| ||||| |||||||||||| ||||| |
Sbjct 702 GAGGGACAAGAAGATTGTGAGCAACAACAAGAGGCTGAGTTAACCGGTTTTTCTGATGAC 761
Query 618 CCTTGAGACGATG---CTAGAGGGACATGAAGATCGTGA 653
||| ||| ||||| ||||| ||| | |||||||||||
Sbjct 762 CCT-GAGTCGATGTTGCTAGATGGAGAAGAAGATCGTGA 799
Score = 132 bits (71), Expect = 5e-30
Identities = 90/99 (91%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 746 AGCAAGAAAAAGATGATGTGATGGTACTGATAAACAATCCTAATGATGCCCTCGCATTGG 805
|||||||| | |||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1018 AGCAAGAAGATGATGATATGATGGTGCTGATGGACAATCCTAATGATGCCCTCGCATTGG 1077
Query 806 GGAATTATGAGATTATTGATCTAACTAGGGTTGAT-AAA 843
||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1078 GGAATTATGAGTTTATT-ATCTAACTAGGGTTGATGAAA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5