BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03495.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470369 jgi|Araly1|470369|fgenesh2_kg.1__323__AT1G03495.1 2366 0.0
Ahg919016 jgi|Araly1|919016|scaffold_100297.1 1821 0.0
> Ahg470369 jgi|Araly1|470369|fgenesh2_kg.1__323__AT1G03495.1
Length=1623
Score = 2366 bits (1281), Expect = 0.0
Identities = 1518/1633 (93%), Gaps = 13/1633 (1%)
Strand=Plus/Plus
Query 63 AAGCAAACATAAAGGACCAACAAATGTTTTGAAAACCaaaaaaaaTGGTGGTTGTGGAGG 122
||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1 AAGCAAACATAAAGGCCCAACAAATGTTTTGAAAACCAAACAAAATGGTGGCTGTGGAGG 60
Query 123 TTGGGGCACATGAGAGCGtttttttGACCAAAGTACGTAACAGAATCAACTTCTTCACTT 182
||||||||||||| | | |||||||||| | || |||||||||||||||||||||
Sbjct 61 TTGGGGCACATGACAAAG--CATTTGACCAAA-T--GTGACAGAATCAACTTCTTCACTT 115
Query 183 GCCCGGTGGTTTCATTTTCCTTTTATAAAAAGACAAAT-ATGAACTCATTTCCTCAAAAC 241
||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||
Sbjct 116 GCCCGGTGGTTTCATTTACCTTTTATAAAAAGAGAACTAATGAACTCATTTCCTCAAAAC 175
Query 242 TTAATCACACCATGGCGGCTCAACTTCAACCTTATAACATCATCGAGACCTGTCACATCT 301
||||||||||||| |||||| | ||||||| ||||||||||||||||||||| ||||
Sbjct 176 TTAATCACACCAT---GGCTCATCCTCAACCTCCTAACATCATCGAGACCTGTCATATCT 232
Query 302 CTCCCCCAAAGGGCACCGTTGCATCCACCActcttcctctcaccttcttcgatgccccct 361
||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 233 CTCCCACAACCGGCACCGTTCCATCCACCACTCTTCCTCTCACCTTCTTTGATGCCCCGT 292
Query 362 ggctctctctcccactcgccgattctctcttcttcttctcttACCAAAACTCAACTGAAT 421
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 293 GGCTCACTCTCCCACTCGCCGATTCTCTCTTCTTCTTTTCTTACCAAAACTCAACTGAAT 352
Query 422 CTTTCCTCCAAGACTTTGTACCCAACCTCAAACATTCCCTCTCCATCACTCTCCAACATT 481
|||||||| |||| |||||||||||||| ||||| || ||||||||| ||||||| ||||
Sbjct 353 CTTTCCTCAAAGATTTTGTACCCAACCTTAAACAATCACTCTCCATCTCTCTCCAGCATT 412
Query 482 TCTTCCCTTACGCCGGTAAACTGATTATCCCGCCTCGTCCCGACCCTCCATATTTACACT 541
||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 413 TCTTCCCTTACGCCGGTAAACTGATCATCCCGTCTCGTCCCGACCCTCCATACTTACAGT 472
Query 542 ACAACGCTGGCGAAGACTCTCTTGTTTTCACCGTAGCAGAGTCTACTGAAACCGACTTCG 601
|||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 473 ACAACGATGGCAAAGACTCTCTTGTTTTCACTGTAGCAGAGTCTACTGAAACCGACTTCA 532
Query 602 ACCAACTGAAGTCTGATTCCCCTAAAGATATCAGTGTGTTGCATGGCGTCTTGCCCAAGT 661
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 533 ACCAACTGAAAACTGATTCCCCTAAAGATATCAGGGTGTTGCATGGCGTCTTGCCCAAGT 592
Query 662 TACCTCCTCCTCACGTCTCTCCGGAAGGAATTCAGATGCGACCAATAATGGCAATGCAAG 721
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 593 TACCTCCTCCTCATGTCTCTCCGGAAGGAATTCAGATGCGGCCAATAATGGCGATGCAAG 652
Query 722 TCACCATCTTCCCTGGAGCTGGAATCTGTATAGGCAACTCAGCTACACATGTTGTAGCAG 781
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 653 TCACCATCTTCCCTGGAGCCGGAATCTGTATAGGCAACTCAGCTACACATGTTGTAGCGG 712
Query 782 ATGGAGTCACCTTCAGTCATTTCATGAAGTATTGGATGTCATTGACCAAATCCAGCGGCA 841
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 713 ATGGAGTCACCTTCAGTCACTTCATGAAGTATTGGATGTCACTGACCAAATCCAACGGCA 772
Query 842 AAGATCCGGCCACGGTTCTTCTACCCTCTCTGCCTATTCACAGCTGCAGAAACATAATCA 901
||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 773 AAGATCCTGCCACGGTTCTTCTACCCCCTCTGCCTATTCACAGCTGCAGAAACATGATCA 832
Query 902 AGGACCCAGGAGAGGTAGCCGCAGGACATTTGGAGCGGTTTTGGAGCCAAAACTCTGCAA 961
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 833 AGGACCCAGGAGAGGTAGGCGCAGGACATTTGGAGCGGTTTTGGAGCCAAAACTCTGGAA 892
Query 962 AACACAGTTCACATGTTACGCCTGAGAACATGGTCAGAGCCACTTTTACATTGAGCCGGA 1021
|| ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 893 AAAACAGTTCACATGTTACGCCTGAGAACATGGTTAGAGCTACTTTTACAATGAGCCGGA 952
Query 1022 AGCAGATAGACAATCTCAAGAGTTGGGTTACAGAGCAGTCTGAGAATCAATCTCCTGTTT 1081
| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 953 ATCAGATAGACAATCTCAAGAGCTGGGTTAAAGAGCAGTCTGAGAATCAATCTCCTGTTT 1012
Query 1082 CTACCTTCGTGGTGACTCTAGCTTTCATTTGGGTAAGCTTGATTAAGACACTTGTTCAAG 1141
||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct 1013 CTACCTTCGTGGTAACTCTAGCTCTCATTTGGGTAAGCTTGATGAAGACAATTGTTCAAG 1072
Query 1142 ACAGTGAAACAGAGGCCAAGGACGAAGTCTTTCACTTGATGATCAACGTGGATTGCAGGA 1201
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1073 ACAGTGAAACAGAGGCTGAGGACGAAGTCTTTCACTTGATGATCAATGTGGATTGCAGGA 1132
Query 1202 ATCGTCTCAAGTACACACAACCAATACCACAAACATACTTTGGCAACTGTATGGCTCCTG 1261
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1133 ATCGTCTCAAGTACACACAACCAATACCACAAACATACTTTGGCAACTGCATGGCTCCTG 1192
Query 1262 GTATCGTATCAGTCAAGAAAC-ACGATTTGCTAGGAGAAAAATGCGTCATGGCTGCTTCA 1320
| |||||||| |||||||||| | |||||| ||||||| |||||||| |||||||||||
Sbjct 1193 GGATCGTATCTGTCAAGAAACGA-GATTTGTTAGGAGAGAAATGCGTTTTGGCTGCTTCA 1251
Query 1321 GATGCAATCACAGCGAGAATCAAAGATATGTTATCAAGCGATCTGTTGAAGACAGCACCA 1380
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1252 GACGCAATCACAGCGAGAATCAAAGATATGTTATCAAGCGATCTACTGAAAACAGCACCA 1311
Query 1381 AGATGGGGACAAGGAGTACGTAAATGGGTCATGTCCCATTATCCAACCTCAATTGCAGGA 1440
| ||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 1312 ACATGGGGACAAGGAGTACGTAAATGGGTCATGTCCCGTTTTCCAACCTCAATAGCAGGA 1371
Query 1441 GCTCCGAAATTGGGACTGTATGACATGGATTTTGGATTAGGAAAGCCCTGCAAAATGGAG 1500
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1372 GCTCCGAAATTGGGACTGTATGATATGGATTTTGGGTTAGGAAAGCCCTGCAAAATGGAG 1431
Query 1501 ATAGTGCACATAGAAACAGGTGGTTCTATCGCATTCTCAGAGTCCAGAGACGGCAGCAAT 1560
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1432 ATAGTGCACATAGAAACAGGTGGTTCAATCGCATTCTCAGAGTCCAGAGACGGCAGTAAT 1491
Query 1561 GGAGTTGAGATTGGAATAGCACTAGAGAAGAAGAAAATGGATGTGTTTGACTCACTTCTA 1620
||||||||||||||||||||||| || |||||||||||||| || |||| |||| |||||
Sbjct 1492 GGAGTTGAGATTGGAATAGCACTGGAAAAGAAGAAAATGGAAGTATTTGGCTCAATTCTA 1551
Query 1621 CAAAAGGGGATCAAGAAATTCGCAACGTAGCAGCCCCTTTC-TCATCCAATAACTTGTAG 1679
||| |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 1552 CAACAGGGGATCAAGAAATTCGAAACGTAGCAGCCC-TTTAGTCATCCAATAACTTGTAA 1610
Query 1680 CAACGAAATGATT 1692
| |||||||||
Sbjct 1611 TAGGGAAATGATT 1623
> Ahg919016 jgi|Araly1|919016|scaffold_100297.1
Length=1354
Score = 1821 bits (986), Expect = 0.0
Identities = 1168/1254 (93%), Gaps = 20/1254 (2%)
Strand=Plus/Plus
Query 433 GACTTTGTACCCAACCTCAAACATTC-CCTCTCCATCACTCTCCAACATTTCTTCCCTTA 491
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 105 GACTTTGTACCCAACCTCAAACAATCACC-CTCCATCACTCTCCAACATTTCTTCCCTTA 163
Query 492 CGCCGGTAAACTGATTATCCCGCCTCGTCCCGACCCTCCATATTTACACTACAACGCTGG 551
||||||||||||||| |||| | ||||||||||||||||||| ||||| ||||| | |||
Sbjct 164 CGCCGGTAAACTGATCATCCTGTCTCGTCCCGACCCTCCATACTTACAGTACAATGATGG 223
Query 552 CGAAGACTCTCTTGTTTTCACCGTAGCAGAGTCTACTGAAACCGACTTCGACCAACTGAA 611
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 224 CGAAGACTCTCTTGTTTTCACTGTAGCAGAGTCTACTGAAACCGACTTCAACCAACTGAA 283
Query 612 GTCTGATTCCCCTAAAGATATCAGTGTGTTGCATGGCGTCTTGCCCAAGTTACCTCCTCC 671
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 284 AACTGATTCCCCTAAAGATATCAGGGTGTTGCATGGCGTCTTGCCCAAGTTACCTCCTCC 343
Query 672 TCACGTCTCTCCGGAAGGAATTCAGATGC-GACCAATAATGGCAATGCAAGTCACCATCT 730
||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 344 TCATGTCTCTCCGGAAGGAATTCAGATGCCG-CCAATAATGGCGATGCAAGTCACCATCT 402
Query 731 TCCCTGGAGCTGGAATCTGTATAGGCAACTCAGCTACACATGTTGTAGCAGATGGAGTCA 790
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 403 TCCCTGGAGCCGGAATCTGTATAGGCAACTCAGCTACACATGTTGTAGCGGATGGAGTCA 462
Query 791 CCTTCAGTCATTTCATGAAGTATTGGATGTCATTGACCAAATCCAGCGGCAAAGATCCGG 850
|||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 463 CCTTCAGTCACTTCATGAAGTATTGGATGTCACTGACCAAATCCAACGGCAAAGATCCTG 522
Query 851 CCACGGTTCTTCTACCCTCTCTGCCTATTCACAGCTGCAGAAACATAATCAAGGACCCAG 910
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 523 CCACGGTTCTTCTACCCCCTCTGCCTATTCACAGCTGCAGAAACATGATCAAGGACCCAG 582
Query 911 GAGAGGTAGCCGCAGGACATTTGGAGCGGTTTTGGAGCCAAAACTCTGCAAAACACAGTT 970
||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 583 GAGAGGTAGGCGCAGGACATTTGGAGCGGTTTTGGAGCCAAAACTCTGGAAAAAACAGTT 642
Query 971 CACATGTTACGCCTGAGAACATGGTCAGAGCCACTTTTACATTGAGCCGGAAGCAGATAG 1030
||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||
Sbjct 643 CACATGTTACGCCTGAGAACATGGTTAGAGCTACTTTTACAATGAGCCGGAATCAGATAG 702
Query 1031 ACAATCTCAAGAGTTGGGTTACAGAGCAGTCTGAGAATCAATCTCCTGTTTCTACCTTCG 1090
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 703 ACAATCTCAAGAGCTGGGTTAAAGAGCAGTCTGAGAATCAATCTCCTGTTTCTACCTTCG 762
Query 1091 TGGTGACTCTAGCTTTCATTTGGGTAAGCTTGATTAAGACACTTGTTCAAGACAGTGAAA 1150
|||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 763 TGGTAACTCTAGCTCTCATTTGGGTAAGCTTGATGAAGACAATTGTTCAAGACAGTGAAA 822
Query 1151 CAGAGGCCAAGGA------C---GA--A-GTCTTTCACTTGATGATCAACGTGGATTGCA 1198
||||||| ||||| | || | |||||||||||||||||||| ||||||||||
Sbjct 823 CAGAGGCTAAGGAGGAAGACAAAGACGAAGTCTTTCACTTGATGATCAATGTGGATTGCA 882
Query 1199 GGAATCGTCTCAAGTACACACAACCAATACCACAAACATACTTTGGCAACTGTATGGCTC 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 883 GGAATCGTCTCAAGTACACACAACCAATACCACAAACATACTTTGGCAACTGCATGGCTC 942
Query 1259 CTGGTATCGTATCAGTCAAGAAAC-ACGATTTGCTAGGAGAAAAATGCGTCATGGCTGCT 1317
|||| |||||||| |||||||||| | |||||| |||||||||||||||| ||||||||
Sbjct 943 CTGGGATCGTATCTGTCAAGAAACGA-GATTTGTTAGGAGAAAAATGCGTTTTGGCTGCT 1001
Query 1318 TCAGATGCAATCACAGCGAGAATCAAAGATATGTTATCAAGCGATCTGTTGAAGACAGCA 1377
||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1002 TCAGACGCAATCACAGCGAGAATCAAAGATATGTTATCAAGCGATCTACTGAAAACAGCA 1061
Query 1378 CCAAGATGGGGACAAGGAGTACGTAAATGGGTCATGTCCCATTATCCAACCTCAATTGCA 1437
|||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct 1062 CCAACATGGGGACAAGGAGTACGTAAATGGGTCATGTCCCGTTTTCCAACCTCAATAGCA 1121
Query 1438 GGAGCTCCGAAATTGGGACTGTATGACATGGATTTTGGATTAGGAAAGCCCTGCAAAATG 1497
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1122 GGAGCTCCGAAATTGGGACTGTATGATATGGATTTTGGGTTAGGAAAGCCCTGCAAAATG 1181
Query 1498 GAGATAGTGCACATAGAAACAGGTGGTTCTATCGCATTCTCAGAGTCCAGAGACGGCAGC 1557
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1182 GAGATAGTGCACATAGAAACAGGTGGTTCAATCGCATTCTCAGAGTCCAGAGATGGCAGT 1241
Query 1558 AATGGAGTTGAGATTGGAATAGCACTAGAGAAGAAGAAAATGGATGTGTTTGACTCACTT 1617
|||||||||||||||||||||||||| || |||||||||||||| || |||| |||| ||
Sbjct 1242 AATGGAGTTGAGATTGGAATAGCACTGGAAAAGAAGAAAATGGAAGTATTTGGCTCAATT 1301
Query 1618 CTACAAAAGGGGATCAAGAAATTCGCAACGTAGCAGCCCCTTTC-TCATCCAAT 1670
|||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 1302 CTACAACAGGGGATCAAGAAATTCGAAACGTAGCAGCCC-TTTAGTCATCCAAT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5