BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03510.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919017 jgi|Araly1|919017|scaffold_100298.1 1995 0.0
> Ahg919017 jgi|Araly1|919017|scaffold_100298.1
Length=1330
Score = 1995 bits (1080), Expect = 0.0
Identities = 1224/1294 (95%), Gaps = 8/1294 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCTTCGTACGCGTCGAGCTGCACTAAATTGATCTCTCTCACCAAACAATTAAGC 60
|||||||| |||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCTTCCTCGTACGCATTGAACTGCACTAAATTGATCTCTCTCACCAAACAATTAAGC 80
Query 61 TCTTACGCGAACCAAGGAAACCATGAACAAGCTCTTAATCTCTTTCTTCAAATGCATTCT 120
|||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||
Sbjct 81 TCTTACGCGAACCAAGGATTCCATGAACAAGCTCTCACTCTCTTTCGTCAAATGCATTCT 140
Query 121 TCTTTCGCCTTACCTCTCGATGCACACGTCTTCTCACTCGCTCTCAAATCGTGCGCTGCA 180
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 141 TCTTTCGCATTACCTCTCGACGCACACGTCTTCTCACTCGCTCTCAAATCGTGCGCTGCA 200
Query 181 GCTTTCCGTCCTGTTCTCGGTGGATCAGTCCATGCACACTCCGTCAAATCCAATTTTCTG 240
||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 201 GCTTTCCATCCTGTTCTCGGCGGATCAGTCCATGCCCACTCCGTCAAATCCAATTTTCTG 260
Query 241 TCGAACCCATTTGTTGGATGCGCGT-TACTCGATATGTATGGTAAATGCTTGTCTGTTTC 299
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 261 TCGAACCCATTTGTGGGATGCGC-TCTACTCGATATGTATGGTAAATGCTTGTCTGTTAC 319
Query 300 TCATGCTCGTAAACTGTTCGACGAAATTCCTCAGAGGAATGCGGTAGTATGGAACGCGAT 359
||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 320 TCATGCTCGCAAACTGTTCGACGAAATTCCTCAGAGGAATGCTGTTGTGTGGAACGCGAT 379
Query 360 GATTTCGCATTACACACATTGTGGGAAGGTT-AAGGAAGCAGTGGAGTTGTATGAAGCTA 418
|||||||||||||||||||||||||||| || || ||||| || ||||||||||||||||
Sbjct 380 GATTTCGCATTACACACATTGTGGGAAGATTCAA-GAAGCGGTTGAGTTGTATGAAGCTA 438
Query 419 TGGATGTTATGCCAAATGAGTCTTCTTTCAATGCTATCATAAAGGGTTTAGTTGGTACAG 478
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 439 TGGATGTTATGCCAAATGAGTCTTCTTTCAATGCTATCATAAAGGGTTTTGTTGGTACTG 498
Query 479 AAGATGGGTCTTATAGAGCTATTGAATTCTATAGGAAGATGATAGAGTTTAGATTCAAGC 538
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 499 AAGATGGGTCTTATAAAGCTATTGAATTCTATAGGAAGATGATAGATTTTAGATTCAAGC 558
Query 539 CTAATTTGATTACCCTTCTTGCGTTAGTATCTGCTTGCTCAGCCATTGGGGCTTTTCGTT 598
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 559 CTAATTTGATTACGCTTCTTGCGTTAGTTTCCGCTTGCTCAGCCATTGGGGCTTTTCGTT 618
Query 599 TAATAAAAGAGATCCATTCATATGCTTTTAGGAATCTAATTGAGCCGCACCCTCAGTTGA 658
||||||||||||| ||||||||||||||||||||||| ||||||||||| || || ||||
Sbjct 619 TAATAAAAGAGATTCATTCATATGCTTTTAGGAATCTGATTGAGCCGCATCCACAATTGA 678
Query 659 AAAGCGGGTTAGTAGAGGCGTATGGGAGGTGTGGAAGCATTGTCTATGTGCAATTGGTGT 718
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 679 AAAGCGGGTTAGTGGAGGCGTATGGGCGGTGTGGATGCATTGTCTATGTGCAATTGGTGT 738
Query 719 TTGATAGCATGGA-AGATAGGGATGTGGTTGCTTGGAGTAGCTTGATATCCGCTTATGCA 777
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 739 TTGATAGCAT-GACTGATAGGGATGTGGTTGCTTGGAGTAGCTTGATATCTGCTTATGCA 797
Query 778 CTTCACGGTGACGCGGAATCTGCTCTAAAAACATTTCAAGAAATGGAATTGGCGAAAGTA 837
|||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||
Sbjct 798 CTTCACGGTGACGCGGAATCCGCTCTCAGAACATTTCAAGAAATGGAATCGGCGAAAGTA 857
Query 838 ACACCGGATGACATAGCGTTTCTGAACGTGCTAAAGGCTTGTAGTCACGCTGGTTTAGCT 897
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ACACCCGATGACATAGCGTTTCTGAACGTGCTAAAGGCTTGTAGTCACGCTGGTTTAGCC 917
Query 898 GATGAGGCTCTTGTATACTTTAAGAGAATGCAGGGAGATTACGGTTTGCGTGCAAGCAAG 957
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 918 GATGAGGCTCTTTTATACTTTAAGAGAATGCAGGGAGATTACGGTTTGCGTGCAAGCAGG 977
Query 958 GATCATTACTCGTGTTTGGTGGATGTCTTAAGCAGAGTAGGGAGATTTGAAGAAGCTTAT 1017
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 978 GACCATTACTCGTGTTTGGTGGATGTCTTAAGCAGAGTAGGGAGGTTTGAAGAAGCTTAC 1037
Query 1018 AAAGTGATTCAAGCTATGCCTGAGAAGCCAACGGCTAAGACATGGGGGGCTTTGCTTGGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AAAGTGATTCAAGCTATGCCTGAGAAGCCAACGGCTAAGACATGGGGGGCTTTGCTTGGA 1097
Query 1078 GCTTGTAGGAACTACGGTGAGATTGAGCTAGCAGAGATTGCTGC-AAGAGAATTGTTGAT 1136
||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| ||
Sbjct 1098 GCTTGTAGGAACTACGGCGAGGTTGAGCTAGCAGAGATTGCTGCGAAG-GAATTGTGGAA 1156
Query 1137 GGTAGAGCCAGAGAATCCCGCGAATTATGTGTTGTTGGGGAAGATATATATGAGTGTTGG 1196
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1157 GATAGAGCCAGAGAATCCCGCGAATTATGTGTTGTTGGGGAAGATTTATATGAGTGTTGG 1216
Query 1197 AAGACAAGAAGAGGCAGAGAGACTTAGATTGAAGATGAAGGAGAGTGGAGTGAAGGTTTC 1256
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1217 AAGACAAGAAGAGGCAGAGAGACTTCGAATGGAGATGAAGGAGAGTGGAGTGAAGGTTTC 1276
Query 1257 ACCAGGTAGTAGTTGGTGTTTGTTCAAAGATTGA 1290
||| || |||||||||||||||||||||||||||
Sbjct 1277 ACCTGGAAGTAGTTGGTGTTTGTTCAAAGATTGA 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5