BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03520.1
Length=2035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919018 jgi|Araly1|919018|scaffold_100299.1 2174 0.0
Ahg352501 jgi|Araly1|352501|fgenesh1_pg.C_scaffold_6003094 1075 0.0
> Ahg919018 jgi|Araly1|919018|scaffold_100299.1
Length=1384
Score = 2174 bits (1177), Expect = 0.0
Identities = 1317/1386 (95%), Gaps = 4/1386 (0%)
Strand=Plus/Plus
Query 586 ATAGGATAAGTGGTTAGGGAATGAGAAAATTGTATAGGAAGCTGGTTTCATTCAGAGACC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGGATAAGTGGTTAGGGAATGAGAAAATTGTATAGGAAGCTGGTTTCATTCAGAGACC 60
Query 646 CATTTGCTAGGGTCAAGAGACATGTTAGTTCACATTCAGGGTTTAGAGCTTTCAGCGACA 705
| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 61 CTTTTGCTAGGGTGAAGAGACATGTTAGTTCACACTCAGGGATTAGAGCTTTCAGCGACA 120
Query 706 GAAAATGGTTGTTCCCTTTTCTAGCTAGCTTGATCATGTCCATTACTCTTCTGATTTTGT 765
|||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 121 GAAAATGGATGTTCCCTTTTCTAGCAAGCTTGATCATGTCGATTACTCTCCTGATTTTGT 180
Query 766 TAATTTCTGGCCAATTCGACAACTTCTTTGGGGAAGAAGATCAATTACCAGTT-GATGTT 824
|||| ||||||||||||||| ||||| |||||||||||||||||||||| || ||||||
Sbjct 181 TAATCTCTGGCCAATTCGACGGCTTCTATGGGGAAGAAGATCAATTACCA-TTAGATGTT 239
Query 825 GTTTCAGAGTCTAATGACTACTTTGTAGAATCAGATTTCAAGCAATCTATGAATTCGACG 884
||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 240 GTTTCAGAGTCTAATGAGTACTTTGTAGAATCAGATTTCAAACAATCTTTGAATTCGACG 299
Query 885 GCTGATGTTAATCCAGAGCCTCCTAGATTAGCTTATTTAATATCGGGAACAAAAGGCGAT 944
|||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 300 GCTGATGTTAATTTAGGGCCTCCTAGGTTAGCTTATTTGATATCGGGAACAAAAGGCGAT 359
Query 945 AGTCATAGGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAGTATGTTCTG 1004
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 AGTCATAGGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAATATGTTCTG 419
Query 1005 CATTTGGATCTTGAGGCTCCACCTCGAGAACGGATGGAGCTGGCCATGTCCGTGAAGACT 1064
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 420 CATTTGGATCTTGAGGCTCCACCTCGTGAACGGATGGAGCTGGCGATGTCCGTGAAGAGT 479
Query 1065 GATCCGACTTTCCGTGAAATGGAGAATGTTCGTGTGATGGCTCAGTCTAATCTTGTTACT 1124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GATCCGACTTTCCGTGAAATGGAGAATGTTCGTGTGATGTCTCAGTCTAATCTTGTTACT 539
Query 1125 TATAAAGGCCCTACAATGATTGCTTGTACTCTTCAAGCCGTTTCAATCTTGCTAAGAGAA 1184
||||||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||
Sbjct 540 TATAAAGGCCCTACAATGATTGCGTGTACTCTTCAAGCCGTTGCAATTTTGCTGAGGGAA 599
Query 1185 AGCTTACATTGGGATTGGTTTCTTAACCTTAGTGCCTCGGATTATCCTCTAGTAACACAA 1244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 AGCTTACATTGGGATTGGTTTCTTAACCTTAGCGCCTCGGATTATCCTCTAGTAACACAA 659
Query 1245 GATGATTTGTTGTATGTCTTCTCAAATCTGTCTCGGAATGTCAATTTCATCGAGAATATG 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATGATTTGTTGTATGTCTTCTCAAATCTGTCTCGGAATGTCAATTTCATCGAGAATATG 719
Query 1305 CAGCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCCCTA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAGCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCCCTA 779
Query 1365 TACCTATCGAAGAAATCCGATATCGCTTGGACTACTCAACGGCGATCACTTCCAAATTCT 1424
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 780 TACCTATCGAAGAAATCCGATATTGCTTGGACTACTCAACGACGATCACTTCCAAATTCT 839
Query 1425 TTCAGGCTATTCACTGGCTCAGCTTGGATAATGTTGACTCGGTCTTTCCTCGAGTACTGC 1484
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCAAGCTATTCACCGGCTCAGCTTGGATAATGTTGACTCGGTCTTTCCTCGAGTACTGC 899
Query 1485 ATTTGGGGATGGGATAATTTCCCAAGAACAATACTAATGTACTACACAAATTTCGTATCT 1544
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 900 ATTTGGGGATGGGATAACTTCCCAAGAACAATACTAATGTACTACACGAATTTCGTGTCC 959
Query 1545 TCTCCTGAAGGATACTTCCACACAGTAATCTGCAACAGCAAAGAGTTTATCAACACTGCA 1604
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 960 TCTCCTGAAGGATACTTCCATACAGTAATCTGCAACAGCAAAGAGTTTGTCAACACCGCG 1019
Query 1605 ATCGGTCACGACCTTCACTACATTGCTTGGGACAGTCCTCCAAAGCAACACCCTAGATCT 1664
|| || || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATTGGGCATGATCTACACTACATTGCTTGGGACAGTCCTCCAAAGCAACACCCTAGATCT 1079
Query 1665 CTCTCGTTGAAGGATTTTGACAATATGGTCAAGAGCAAAGCTCCATTTGCACGCAAGTTC 1724
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 CTCTCATTGAAGGATTTCGACAATATGGTCAAAAGCAAAGCTCCATTTGCACGCAAGTTC 1139
Query 1725 CACAAAAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGGGACGGACACACCGG 1784
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1140 CACAAGAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGGGACGGACACACAGA 1199
Query 1785 TTTGCACCAGGAGGATGGTGTGTCGGGAGTTCAGCTAATGGCAATGATCAGTGCTCTGTG 1844
||| | ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 1200 TTTTCTCCAGGAGGATGGTGTATTGGGAGTTCAGCTAATGGCAATGATCCGTGCTCTGTG 1259
Query 1845 CAAGGTGACGACTCGGTGTTGAAACCAGGACCTGGTTCTG-AGAGGTTGCAGGAGCTTGT 1903
||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1260 CAAGGCGACGACTCGGTGTTGAAACCTGGACCTGGTTCTGCA-AGGTTGCAGGAGCTTGT 1318
Query 1904 TCAAACACTTTCCTCTGAAGAATTTAGGCGAAAACAGTGTTCTTGAAGTTATCTACTGAT 1963
||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1319 TCAGACACTTTCCTCTGATGAATTTAGGAGAAAACAGTGTTCTTGAAGTTATCTAATGAT 1378
Query 1964 GACGCA 1969
||||||
Sbjct 1379 GACGCA 1384
> Ahg352501 jgi|Araly1|352501|fgenesh1_pg.C_scaffold_6003094
Length=1350
Score = 1075 bits (582), Expect = 0.0
Identities = 1120/1373 (82%), Gaps = 64/1373 (5%)
Strand=Plus/Plus
Query 612 AAATTGTATAGGAAGCTGGTTT-CATTCAGAGACCCATTTGCTAGGGTCAAGAGACATGT 670
||| |||||||||||||| ||| | ||||||||||||| || || || |||||||||||
Sbjct 7 AAAGTGTATAGGAAGCTGATTTGGA-TCAGAGACCCATTAGCGAGAGTGAAGAGACATGT 65
Query 671 TAGTTCACATTCAGGGTTTAGAGCTTTCAGCG--A-CAGAAAATGGTTGTTCCC-TTTTC 726
||||||||||||||||||||| | |||||| | | ||||||||| ||||||| ||||
Sbjct 66 TAGTTCACATTCAGGGTTTAGGGTTTTCAGAGATAGAAGAAAATGGATGTTCCCGTTTT- 124
Query 727 TAGCTAGC-TTGATCATGTCCATTACTCTTCTGAT-TTTGTTAATTTCTGGCCAATTCGA 784
|||| ||| ||| | |||| |||||||| |||| | || | |||| || |||||||||
Sbjct 125 TAGCAAGCTTTG-TTTTGTCGGTTACTCTTTTGATGTCTG-TCATTTATGTCCAATTCGA 182
Query 785 CAACTTCTT-TGGGGAAGAAGATCAATTACCAGTTGATGTTGT-TTCAG-AG--TCTAAT 839
| ||||||| || ||||| | | | ||| || ||||| ||| || || || || |||
Sbjct 183 C-ACTTCTTATGTGGAAG-A-A-CCATTGCCTTTTGATAATGTCTT-AGAAGAATCAAAT 237
Query 840 GACTACTTTGTAGAATCA-GATTTCAAGCAA--TCTATGAATTCGACGGCTG-ATGT-TA 894
|| ||||||||||||||| | ||| || || ||| |||||||||||| | || | |
Sbjct 238 GATTACTTTGTAGAATCACG-TTT-GAG-AATGTCTTTGAATTCGACGG-GGAAT-TCGA 292
Query 895 A-TC--CAGAGCCTCCTAGATTAGCTTATTTAATATCGGGAACAAAAGGCGATAGTCATA 951
| || ||||| |||||| ||||||||| | || ||||| || ||||| ||||||| ||
Sbjct 293 ATTCTTCAGAGGTTCCTAGGTTAGCTTATCTGATCTCGGGGACGAAAGGTGATAGTCTTA 352
Query 952 GGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAGTATGTTCTGCATTTGG 1011
|||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 353 GGATGATGAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAATATGTTCTGCATTTGG 412
Query 1012 ATCTTGAGGCTCCACCTCGA-GAACGGATGGAGCTGGCCATGTCCGTGAAGACTGATCCG 1070
|||| || ||||| ||| | ||| || | || || || ||||| ||||||| |||||||
Sbjct 413 ATCTCGAAGCTCCTCCT-AAGGAAAGGCTTGAACTTGCAATGTCTGTGAAGAGTGATCCG 471
Query 1071 ACTTTCCGTGAAATGGAGAATGTTCGTGTGATGGCTCAGTCTAATCTTGTTACTTATAAA 1130
|||||||||||| | ||||| |||||||| ||| ||||||||||||| ||||||||||||
Sbjct 472 ACTTTCCGTGAATTTGAGAACGTTCGTGTTATGTCTCAGTCTAATCTGGTTACTTATAAA 531
Query 1131 GGCCCTACAATGATTGCTTGTACTCTTCAAGCCGTTTCAATCTTGCT-AAGAGAAAGCTT 1189
||||||||||||||||||||||| ||||| ||||| | || ||||| || |||||| ||
Sbjct 532 GGCCCTACAATGATTGCTTGTACGCTTCAGGCCGTGGCGATTTTGCTTAA-AGAAAGTTT 590
Query 1190 ACATTGGGATTGGTTTCTT-AACCTTAGTGCCTCGGATTATCCTCTAGTAACACAAGATG 1248
||||||||||||| | | |||||||||||||||||||||||||| || ||||||||||
Sbjct 591 GGATTGGGATTGGTT-CATCAACCTTAGTGCCTCGGATTATCCTCTCGTGACACAAGATG 649
Query 1249 ATTTGTTGTATGTCTTCTC-AAATCTGTCTCGGAATGTCAATTTCATCGAGA-ATATGCA 1306
|| || ||||||||||| | |||| |||||||||||||||||||||| || | ||||| |
Sbjct 650 ATATGCTGTATGTCTTCGCGAAAT-TGTCTCGGAATGTCAATTTCATTGA-ACATATGAA 707
Query 1307 GCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCCCTATA 1366
||||||||| ||||||||||| |||||||| |||||||||||||||||||| | || ||
Sbjct 708 GCTCACCGGGTGGAAACTGAACCAGAGGGCCAAATCAATCATTGTTGATCCCGGTCTGTA 767
Query 1367 CCTATCGAAGAAATCCGATATCGCTTGGACTACTCAACGGCGATCACTTCCAA-ATTCTT 1425
||||||||||||| |||| || |||||||||||||||| || |||||||| | || |||
Sbjct 768 CCTATCGAAGAAAACCGAAATTGCTTGGACTACTCAACACCGTTCACTTCCCACAT-CTT 826
Query 1426 TCAGGCTATTCACTGGCTCAGCTTGGATAATGT-TGACTCGGTCTTTCCTCGAGTACTGC 1484
||| ||| ||||| ||||| || ||| || | | ||||||||||||| || || |||| |
Sbjct 827 TCACGCTGTTCACAGGCTCGGCGTGGGTAGT-TCTGACTCGGTCTTTTCTTGAATACT-C 884
Query 1485 A-T-TTGGGGATGGGATAATTTCCCAAGAACAATACTAATGTACTACACAAA-TTTCGTA 1541
| | ||||| |||||||||||| || || |||||| ||||||||||||| || ||| |||
Sbjct 885 AATCTTGGG-ATGGGATAATTTTCCGAGGACAATATTAATGTACTACACCAACTTT-GTA 942
Query 1542 TCTTCTCCTGAAGGATACTTCCACACAGTAATCTGCAACAGCA-AAGAGTTTATCAACAC 1600
|| ||||| ||||| ||||| |||||||| || || |||| | ||||||| | | |||
Sbjct 943 TCCTCTCCAGAAGGGTACTTTCACACAGTCATATGTAACA-CTGAAGAGTTCAAGAGCAC 1001
Query 1601 TGCAATCGGTCACGACCTTCACTACATTGCTTGGGAC-AGTCCTCCAAAGCAACACCCTA 1659
|| || || || ||||| |||||||||||||||||| | |||||||||||||||||| |
Sbjct 1002 CGCGATTGGGCATGACCTGCACTACATTGCTTGGGACTA-TCCTCCAAAGCAACACCCAA 1060
Query 1660 GA-TCTCTCTCGTTGAAGGATTTTGACAATATGGTCAAGAGCAAAGCTCCATTTGCACGC 1718
| ||| | ||| |||||||||| ||||| |||||||| |||||||| |||||||| ||
Sbjct 1061 -ACTCTTTATCGATGAAGGATTTCGACAAGATGGTCAAAAGCAAAGCCCCATTTGCTCGA 1119
Query 1719 AAGTTCCACAAAAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGGGACGGACA 1778
||||||||||| |||||||||| |||||||||||||||| |||||| || || || ||
Sbjct 1120 AAGTTCCACAAGAACGATCCTGTATTAGACAAGATCGATAGAGAGCTCTTAGGCCGCACT 1179
Query 1779 CACCGGTTTGCAC-CAGGAGGATGGTGTGTCGGGAGTTCAGCTAATGGCAATGATCAGTG 1837
|| |||||| | | ||||| ||||| | || || || | |||||| ||||| |||
Sbjct 1180 CATCGGTTTTC-CTCAGGATCTTGGTGCATTGGTAGCTCGGAAAATGGCGCTGATCCGTG 1238
Query 1838 CTCTGTGCAAGGTGACGACTCGGTGTTGAAACCAGGACCTGGTTCTGAGAGGTTGCAGGA 1897
|||||| | || || ||||| || ||||||||||| |||||| | ||||| || ||||
Sbjct 1239 CTCTGTCCGGGGGGATGACTCTGTTTTGAAACCAGGCCCTGGTGCGGAGAGATTAAAGGA 1298
Query 1898 GCTTGTTCAAACACTTTCCTCTGAAGAATTTAGG-CGAAAACAGTGTTCTTGA 1949
||||||||| ||||||| ||||| || || || | |||||| ||||| |||
Sbjct 1299 GCTTGTTCAGACACTTTTATCTGATGAGTTCAGAAC-AAAACAATGTTCATGA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76523302205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5