BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03550.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470330 jgi|Araly1|470330|fgenesh2_kg.1__284__AT1G03550.1 1548 0.0
> Ahg470330 jgi|Araly1|470330|fgenesh2_kg.1__284__AT1G03550.1
Length=1025
Score = 1548 bits (838), Expect = 0.0
Identities = 890/916 (97%), Gaps = 0/916 (0%)
Strand=Plus/Plus
Query 138 TTGAATAAGTTTCTTGATCTTAAAACAAACGATCTCAAAGAATGGCACGACACGATCCTA 197
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 110 TTGAATAAGTTTCTTTATCTTAAAACAAACGATCTCAAAGAATGGCACGGCACGATCCTA 169
Query 198 ATCCATTTGCTGATGAAGAGATCAATCCTTTTGCGAATCATACAAGTGTTCCTCCTGCGA 257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 170 ATCCATTTGCTGATGAAGAGATCAATCCTTTTGCGAATAATACAAGTGTTCCTCCTGCGA 229
Query 258 GCAACTCTTATCTCAAGCCACTTCCACCGGAACCTTATGATCGTGGTGCAACCGTTGATA 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GCAACTCTTATCTCAAGCCACTTCCACCGGAACCTTATGATCGTGGTGCAACCGTTGATA 289
Query 318 TCCCTTTGGATTCTGGCAATGATCTTCGAGCTAAAGAGATGGAACTCCAGGCCAAGGAGA 377
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 290 TCCCTTTGGATTCTGGCAATGATCTTCGAGCTAAAGAGATGGAACTTCAGGCTAAGGAGA 349
Query 378 ACGAATTGAAGCGGAAAGAGCAGGAGCTTAAAAGAAGAGAGGACGCAATAGCACGAACTG 437
||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 350 ACGAACTGAAGCGGAAAGAGCAGGAGCTTAAAAGAAGAGAGGATGCAATAGCGCGAACTG 409
Query 438 GAGTTGTCATTGAAGAGAAGAATTGGCCGGAGTTTTTTCCTTTAATTCATCATGACATTC 497
|||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 410 GAGTTGTCATCGAAGAGAAAAATTGGCCGGAGTTTTTCCCTATAATTCATCATGACATTC 469
Query 498 CAAATGAGATTCCAATTCATTTACAGAAGATCCAATACGTCGCATTCACCACATTGTTAG 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CAAATGAGATTCCAATTCATTTACAGAAGATCCAATACGTCGCATTCACCACATTGTTAG 529
Query 558 GGTTAGTAGGATGTCTCTTGTGGAATATTGTGGCAGTAACTGTAGCTTGGATCAAAGGAG 617
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GTTTAGTAGGATGTCTCTTGTGGAATATTGTGGCAGTAACTGTAGCTTGGATCAAAGGAG 589
Query 618 AAGGTCCCACTATATGGCTTCTCTCAATAATTTACTTCCTTGCTGGGGTACCTGGAGCGT 677
|||||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| |
Sbjct 590 AAGGTCCCACTATATGGCTTCTTTCAATCATCTACTTCATTGCTGGGGTACCTGGAGCTT 649
Query 678 ACGTCTTATGGTACCGTCCTCTTTACCGAGCTACAAGAACTGATAGTGCCCTGAAGTTTG 737
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 650 ACGTCTTATGGTACCGTCCTCTTTACCGAGCTACCAGAACTGATAGTGCCCTGAAGTTCG 709
Query 738 GAGCttttttctttttttACGTGTTCCACATCGCGTTCTGCGGCTTTGCTGCAGTTGCTC 797
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 710 GAGCTTTTTTCTTTTTTTACGTGTTTCACATCGCGTTCTGCGGCTTTGCTGCAGTTGCTC 769
Query 798 CACCAGTCATCTTCCAAGGAAAGTCTCTCACAGGTTTCTTGCCAGCAATCGAGCTTCTAA 857
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 770 CACCAGTCATCTTCCAAGGAAAGTCTCTCACAGGTTTCTTGCCAGCACTTGAGCTTCTAA 829
Query 858 CTACTAATGCTGCAGTCGGGATAATGTATTTCATTGGTGCTGGGTTCTTCTGCATCGAAA 917
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 830 CTACTAATGCTGCAGTCGGGATAATGTATTTCATTGGTGCTGGGTTTTTCTGCATCGAAA 889
Query 918 CACTTCTCAATATCTGGGTCATTCAGCAAGTATATGCATACTTCCGAGGGAGTGGCAAAG 977
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 890 CACTTCTCAATATCTGGGTCATTCAGCAAGTATATGCATATTTCCGAGGGAGTGGCAAAG 949
Query 978 CTGCAGAGATGAAGCGTGAAGCTACAAAATCGACCTTGATGCGTGCACTATGAAGAAATC 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 950 CTGCAGAGATGAAGCGTGAAGCTACAAAATCGACCTTGATGCGTGCACTATGAAGAAAAC 1009
Query 1038 ACTCTTCACCAGAAAA 1053
||||||||||||||||
Sbjct 1010 ACTCTTCACCAGAAAA 1025
Score = 176 bits (95), Expect = 3e-43
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1 TAAAATGCCTTCGATTTCTCTGGCGCCATTGATTTAGTTTTCTCTCTCTGACTACAAAGT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAAATGCCTTCGATTTCTCCGGCGCCATTGATTTAGTTTTCTCTCTCTGACTACAAAGT 60
Query 61 ATCCATTCGTTCAAACCAGTTTCTTCCCATTTTCGATTTCTGTCAAAATT 110
| ||||||||| |||||| |||||||||||||||||||||||||| ||||
Sbjct 61 ACCCATTCGTTGAAACCATTTTCTTCCCATTTTCGATTTCTGTCATAATT 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5