BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03580.1

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334257 jgi|Araly1|334257|fgenesh1_pg.C_scaffold_1000822           616    2e-175


> Ahg334257 jgi|Araly1|334257|fgenesh1_pg.C_scaffold_1000822
Length=918

 Score =  616 bits (333),  Expect = 2e-175
 Identities = 406/442 (92%), Gaps = 2/442 (0%)
 Strand=Plus/Plus

Query  723   GCTCTTTCATTTTCCAAAATTTTAAGTCGCCACCCGGACTTTGAAGTAGATTTCGTGCCA  782
             ||||||||||   || | ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  478   GCTCTTTCATGGACCCATATTTTAAGTCGGCACCCAGACTTTGAAGTAGATTTCGTGCCA  537

Query  783   AAGTACCAGGAGCT-ACTACCAGTGTACTTGACTCTCTTCTTCTGCCTCATCGAGACACT  841
             |||||| ||||||| |    ||||||||||||||||||||||||||||||||||||||||
Sbjct  538   AAGTACGAGGAGCTGA-GGTCAGTGTACTTGACTCTCTTCTTCTGCCTCATCGAGACACT  596

Query  842   GAGCAAGTCTCCACAGAGCTTGTCTGCGGATGAACTAACCAATGCTCAAAACCAACTGTC  901
             ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct  597   GAGCAAGTCTCCACAGAGCTTGTCTGCGGCTGAACTAACCAACGCTCAAAACCAACTGTC  656

Query  902   CGAGCTCACAAAAGTAGGCTTCAAGCTAGACTGGTTGAAGTCTAAGCTCGAGGAGCTTTC  961
              ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  657   TGAGCTGACGAAAGTAGGCTTCAAGCTAGACTGGTTGAAGTCTAAGCTCGAGGAGGTTTC  716

Query  962   CTTGGAGAGGAAGAAAGCAGTTCCCGATGCTTGTCATGTCCTCCACGAACGGGTCAAAAA  1021
             |||||||||||| ||||||||| |||||| ||||||||||||| | ||||||||||| ||
Sbjct  717   CTTGGAGAGGAATAAAGCAGTTACCGATGGTTGTCATGTCCTCGAGGAACGGGTCAAGAA  776

Query  1022  TGTGGAACTGACTTTGTCCAATCTCCAAGTTAAACTGGACAAGGACAGGATCAAATAtgc  1081
             ||||||| |||||||||||  |||||||||||||||||||||||||| |||||||||| |
Sbjct  777   TGTGGAATTGACTTTGTCCGGTCTCCAAGTTAAACTGGACAAGGACAAGATCAAATATAC  836

Query  1082  tgctgctgctgctgGAGTTTCTTCCTTTGGGTTCATTGGtttttttATCAAGAGATTCGT  1141
             |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
Sbjct  837   TGCTGCTGCTGCTGGAGTGTCTTCGTTTGGGTTCATTGGTTTTCTTATCAAGAGATTCTT  896

Query  1142  TCTCTCTTGCTTCTCGGTCTGA  1163
             ||||||||| ||||| ||||||
Sbjct  897   TCTCTCTTGTTTCTCAGTCTGA  918


 Score =  189 bits (102),  Expect = 4e-47
 Identities = 142/161 (88%), Gaps = 4/161 (2%)
 Strand=Plus/Plus

Query  202  TTATTCTTCATCCCAAGGGCTACCCTGGTTATGATAATCACTTGTCTCTATTTCTGAACG  261
            ||||| |||| ||||||||| |||||||||||||| ||||||||||||| ||||||| ||
Sbjct  113  TTATTGTTCACCCCAAGGGCCACCCTGGTTATGATCATCACTTGTCTCTGTTTCTGAGCG  172

Query  262  TACCT-AATCTTGA-ATCATTGAGACTTGGATGGAAAAGGAGAACTCGCTTTTTCTTCGT  319
            | | | |||||| | ||||||||||||||||||| | ||||||  ||||| |||||||||
Sbjct  173  T-CTTGAATCTT-AGATCATTGAGACTTGGATGGCATAGGAGAGTTCGCTGTTTCTTCGT  230

Query  320  TATTTTGAATCAATCCGGCAACGAGCTCTGCAGATCCCCTA  360
            ||||||||||||||||||||| |||||||||||| || |||
Sbjct  231  TATTTTGAATCAATCCGGCAAAGAGCTCTGCAGAACCACTA  271



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45023164977


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5