BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03590.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910021 jgi|Araly1|910021|Al_scaffold_0001_275 2298 0.0
Ahg490221 jgi|Araly1|490221|fgenesh2_kg.6__3355__AT4G03415.1 1026 0.0
> Ahg910021 jgi|Araly1|910021|Al_scaffold_0001_275
Length=1383
Score = 2298 bits (1244), Expect = 0.0
Identities = 1334/1379 (97%), Gaps = 0/1379 (0%)
Strand=Plus/Plus
Query 389 ATGGGAGGTTGTATCTCTAAGACTTCGTGGAGCAATGAAGAGCCTATGCATCGCCCATGT 448
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGAGGTTGTATCTCTAAGAGTTCGTGGAGCAATGAAGAGCCTATGCATCGCCCGTGT 60
Query 449 CTTGGGATGGGATGTTGTGGGAGCAAAATGGGGAAGAGAGGTTTTTCAGACCGCATGGTT 508
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTCGGGATGGGATGTTGTGGGAGCAAAATGGGGAAGAGAGGTTTTTCAGACCGCATCGTT 120
Query 509 TCACTTCATAACTTGGTTTCTATACCGAATCGGATCATTGGGAATGGAAAGAGCAGGAGT 568
|| ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||
Sbjct 121 TCGCTTCATAACTTAGTTTCTATACCGAATCGGATCATCGGTAACGGAAAGAGCAGGAGT 180
Query 569 TCTTGCATTTTCACTCAACAGGGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGG 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTGCATTTTCACTCAACAGGGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGG 240
Query 629 GAAGATTTTATGTCGAAAGATGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCTCAT 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GAAGATTTTATGTCGAAAGATGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCCCAT 300
Query 689 GGTCATCTTGTTGCTCGTAAAGTGAGAGATTCATTGCCTGTAAAGTTGCTGTCCCTCCTG 748
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 GGTCATCTTGTTGCTCGTAAAGTGAGGGATTCATTGCCTGTAAAGTTGCTGTCTCTCCTG 360
Query 749 AATTCCATTAAGTCGAAGCAAAATGGACCCATAGGAACTCGTGCAAGCAAATCCGATAGC 808
||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 361 AATTCCATTAAGTCGAAGCAAAATGGATCCACAGGAACTCGTACAAGCAAATCCGATAGC 420
Query 809 CTAGAAGCTGAGAAAGAAGAATCTACTGAGGAGGATAAATTGAATTTCTTATGGGAGGAA 868
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 421 CTAGAAGCTGAGAAGGAAGAATCTACTGAGGAGCATAAATTAAATTTCTTATGGGAGGAA 480
Query 869 GCTTTCTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTTTCTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAA 540
Query 929 TGCTTCTGCAGTGGCTGCACAGCTGTTACAATCATTAAGCAGGGATCAAATCTATACATG 988
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 541 TGCTTCTGCAGTGGCTGCACGGCTGTTACAATCATTAAGCAGGGGTCAAATCTATTCATG 600
Query 989 GGTAACATTGGGGATTCTCGGGCGATACTTGGATCTAAAGACAGCAATGATTCGATGATT 1048
|| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||
Sbjct 601 GGAAACATTGGGGATTCTCGGGCGATACTTGGATCCAAAGACATCAACGATTCGATGGTT 660
Query 1049 GCAGTTCAGCTAACAGTAGACTTAAAACCTGACTTGCCAAGGGAAGCTGAGAGGATCAAA 1108
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 661 GCAGTTCAGCTAACAGTTGACTTAAAGCCTGACTTACCAAGGGAAGCTGAGAGGATCAAA 720
Query 1109 CAGTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTA 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTA 780
Query 1169 CCATTTGATAATGCTCCTGGATTAGCCATGGCTAGAGCTTTCGGTGATTTCTGTCTGAAA 1228
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 CCATTTGATAATGCTCCTGGATTAGCTATGGCTAGAGCTTTCGGTGATTTCTGTCTGAAA 840
Query 1229 GACTATGGAGTGATTTCGATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCAG 1288
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACTACGGTGTGATTTCGATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCAG 900
Query 1289 TTCATTGTCTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTAGTTGAA 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 TTCATTGTCTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTGGTTGAA 960
Query 1349 GTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGGCTCGTGGTGGATTCAGCTGTA 1408
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 GTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGACTCGTGGTGGATTCAGCTGTA 1020
Query 1409 CGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTGTTTG 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTGTTTG 1080
Query 1469 TTTCTCGACGGCAGAATGGACTCAGAGACATCAGATAACGAAGAACAATGCTTCTCTTCG 1528
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1081 TTTCTAGACGGCAGAATGGACTCAGAGTCATCGGATAACGAAGAACAATGCTTCTCTTCG 1140
Query 1529 GCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAGAAAT 1588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAGAAAC 1200
Query 1589 GTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTATGGTAAAGTGATTGCA 1648
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1201 GTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTACGGTAATGTGATTGCA 1260
Query 1649 GAGGCTGATAATGCAGAGAAGGAGAAAACGAGGGAAGGAGAACAGAACTGGTCGGGACTA 1708
||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 1261 GAGACTGATAATGCAGAGAAGGAGAAAACGACGGTAGGAGAACAGAACTGGTCAGGACTA 1320
Query 1709 GAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGGAACC 1767
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1321 GAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGAAACC 1379
> Ahg490221 jgi|Araly1|490221|fgenesh2_kg.6__3355__AT4G03415.1
Length=1407
Score = 1026 bits (555), Expect = 0.0
Identities = 1127/1396 (81%), Gaps = 68/1396 (5%)
Strand=Plus/Plus
Query 416 TGGAGCAAT-GA-AG-AGCCTATGCATCGCCCATGTCTTGGGATGGGATGTTGTGGGAGC 472
||||||||| || || ||||| ||| | | |||| ||| ||||| || ||||||| ||||
Sbjct 46 TGGAGCAATGGAGAGAAGCCTGTGCGTAGGCCATATCTCGGGATTGGTTGTTGTGTGAGC 105
Query 473 AAAATGGG-GAAGAG-AGGTTTTTCAGACCGCATGGTTTCACTT-CATAACTTGGTTTCT 529
|||| ||| |||||| | | |||||||||| ||| || || || || | |||| ||||
Sbjct 106 AAAA-GGGCGAAGAGAACG-TTTTCAGACCACATTGTCTC-GTTGCAGAGCTTGACTTCT 162
Query 530 ATACCGAATCGGATCATTGGGAATGGAAAGAGCAGGAGTTCTTGCATTTTCACTCAACAG 589
||||| |||||||||| | | ||||||||||| ||||| ||||||||||||||
Sbjct 163 ATACCAAATCGGATCACCACTAGCAGCAAGAGCAGGAGCTCTTGTATTTTCACTCAACAA 222
Query 590 GGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGGGAAGATTTTATGTC-GAAAGA 648
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 223 GGACGCAAGGGTATTAATCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTG-AAGA 281
Query 649 TGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCTCATGGTCATCTTGTTGCTCGTAA 708
||| |||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 282 TGTGACCTTTTGTGGTGTATTTGATGGTCATGGTCCTTATGGTCATCTTGTTGCTCGTAA 341
Query 709 AGTGAGAGATTCATTGCCTGTAAAGTTGCTGTCCCTCCTGAATTC-CATTAAGTCGAAGC 767
|||||||||| |||||||||| ||||||| ||| || | || | | || |||| ||||
Sbjct 342 AGTGAGAGATACATTGCCTGTGAAGTTGCAGTCTTTCTTTCATACGC-TTCAGTCAAAGC 400
Query 768 AAAATGGACCCATAGGAACTCG-T---G--------CAAGCAAATCCGATAG-CCTAGAA 814
|||| || | | ||||||||| | | |||||||||| | | | || ||||
Sbjct 401 AAAACGGTTCGAAAGGAACTCGATTCAGAAGAAATTCAAGCAAATCGGCT-GTCCAAGAA 459
Query 815 GCTGAGAAAGAAGAATCTACTGAGGAGGATAAATTGAATTTCTTATGGG-AGGAAGCTTT 873
|| | ||||||| |||| || ||||||||| | || ||| |||| || |||||||
Sbjct 460 GCCGTTAAAGAAGGATCT---GACGAGGATAAACTAAAAGGCTTGTGGGGAG-AAGCTTT 515
Query 874 CTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAATGCTT 933
||||||||| || || || |||||||||||||| ||||| ||||||||||| || || ||
Sbjct 516 CTTGAAATCTTTTAAAGCCATGGATAAGGAACTACGATCTCATCCTAATCTGGACTGTTT 575
Query 934 CTGCAGTGGCTGCACAG-CTGTTACAAT-CATTAAGCAGGGATCAAATCTATACATGGGT 991
||| |||||| | || | | || ||||| | |||| ||||| || ||||| | ||||||
Sbjct 576 CTGTAGTGGCAGTACTGGC-GTAACAATTC-TTAAACAGGGGTCTAATCTCTTCATGGGA 633
Query 992 AACATTGGGGATTCTCGGGCGATACTTGGATCTAAAGACAGCAATGATTCGATGATTGCA 1051
|||||||||||||||||||| || |||||||| ||||| || || ||||| ||| | |||
Sbjct 634 AACATTGGGGATTCTCGGGCCATCCTTGGATCAAAAGATAGTAACGATTCTATGGTGGCA 693
Query 1052 GTTCAGCTAACAGTAGA-CTTAAAACCTGACTTGCCAAGGGAAGCTGAGAGGATCAAACA 1110
||| |||||||| || || || || || || || ||||||||||||||||||||||
Sbjct 694 ACTCAACTAACAGTTGATCTGAAG-CCGGATTTACCGAGGGAAGCTGAGAGGATCAAACG 752
Query 1111 GTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTACC 1170
|||||||||| | || |||||| || ||||||||||||||||| | ||||||||| ||||
Sbjct 753 GTGTAAAGGTCGAGTATTTGCATTGGAAGACGAGCCAGAGGTGCCGCGAGTTTGGTTACC 812
Query 1171 ATT-TGATAATGCTCCTGGATTAGCCATGGCTAGAGC-TTTCGGTGATTTCTGTCTGAAA 1228
|| |||| |||| |||||||| ||||||||||| || ||| ||||| |||||||| |||
Sbjct 813 -TTATGATGATGCACCTGGATTGGCCATGGCTAGGGCGTTT-GGTGACTTCTGTCTAAAA 870
Query 1229 GACTATGGAGTGATTTC-GATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCA 1287
|| |||||||| ||||| | |||| |||||| ||||||||||||||||||| | ||||||
Sbjct 871 GATTATGGAGTCATTTCAG-TACCTGAGTTCACTCACCGTGTTCTTACAGACAAAGATCA 929
Query 1288 GTTCATTGT-CTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTAGTTG 1346
|||||||| |||| |||| || ||||| ||||||||| ||||||| |||||||| ||||
Sbjct 930 ATTCATTGTTCTTG-CCTCGGACGGAGTATGGGATGTGTTAAGCAATGAAGAAGTGGTTG 988
Query 1347 A-AGTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGG-CTCGTGGTGGATTCAGC 1404
| | || |||| |||||||||||||| |||||||| |||||| | | ||||| | || ||
Sbjct 989 ACA-TTATAGCTTCAGCTACAAGCCGAGCATCAGCGGCTAGGAC-CTTGGTGAACTCGGC 1046
Query 1405 TGTACGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTG 1464
|| || ||||||||||| |||||||||||||| || ||||||||||||||||| || ||
Sbjct 1047 TGCGCGTGAATGGAAACTGAAGTACCCGACTTCCAAAATGGATGATTGTGCAGTGGTATG 1106
Query 1465 TTTGTTTCTCGACGGCAGAATGGACTCAGAGACATCAGATAACGAAGAACAATGCTTCTC 1524
||||||||| || || | |||||| || ||| || ||| | || ||||| |||||||
Sbjct 1107 TTTGTTTCTGGATGGGAAAATGGATTCTGAG---TCGGATTATGATGAACAGGGCTTCTC 1163
Query 1525 TTCGGCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAG 1584
||| |||||||| || ||||||||||| || |||| || ||||||| ||||| || ||
Sbjct 1164 TTCAGCAACAAATGCTGTAGAATCAGATGACGGCCAAAGATCAGAACCATGTCTCCAAAG 1223
Query 1585 AAA-TGTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTATGGTAAAGTGA 1643
||| | ||||||| ||||||| ||| | ||||||||||| | | ||| ||||| ||||
Sbjct 1224 AAACT-TCACAGTTAGATCATCCTCA--G-ATCAAGAAAACGAGACTTACGGTAATGTGA 1279
Query 1644 TTGCAGAGGCTGATAATGCAGAGAAGGAGAAAACGAGGGAAGGAGAACAGAACTGGTCGG 1703
| ||||| ||||| |||||| | ||||||||| | | ||||| || ||||||| ||
Sbjct 1280 ATACAGAGACTGAT---GCAGAGGATGAGAAAACG-GT-A-GGAGATCAAAACTGGTTGG 1333
Query 1704 GACTAGAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGG 1763
| |||||||| || || || |||||||| ||||| || |||||||||||| ||| ||||
Sbjct 1334 GTCTAGAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGAGATTCTCTGAAGAG- 1392
Query 1764 AA--CCAAAGACTTGA 1777
|| |||| |||||||
Sbjct 1393 AAGTCCAA-GACTTGA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5