BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03610.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1 2398 0.0
Ahg943368 jgi|Araly1|943368|scaffold_603912.1 850 0.0
Ahg491960 jgi|Araly1|491960|fgenesh2_kg.7__1393__AT4G28150.1 187 2e-46
> Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1
Length=1605
Score = 2398 bits (1298), Expect = 0.0
Identities = 1554/1665 (93%), Gaps = 67/1665 (4%)
Strand=Plus/Plus
Query 16 CCCTCATTTTATGGCTTTACCTTTTATTCATTTACCTTGTCTCGATTGATCTGACTTCAA 75
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||
Sbjct 1 CCCTCATTTTATGGCTTTACCTTTTATTCTTTTACCTTCTCTTGATTGATCTGACTTGAA 60
Query 76 GATTAGAAATCTCGACGCGTGGCTTCCATTTTTTCTCAGAGAATCACATTTaaaaaaaaa 135
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 61 GATTAGAAATCTCGACGCGTGGCTTCAATTTTTTCTTAGAGAATCACA-TT--------- 110
Query 136 aaaCAGAAAAACAATATTCGATCTTTGCTTACTACTCATTGTGC-GTCTTCTCGATTTGT 194
||||||||||||||||||||| | |||||||||| | |||||||||| ||||
Sbjct 111 -------AAAACAATATTCGATCTTTGC-T--TACTCATTGT-CTGTCTTCTCGA-TTGT 158
Query 195 AA------TCTCCATACAATTTTTTCTAGAGAGAATCCATCTCTCTCTCttttttttCTT 248
|| |||||||||| |||||||| || |||||||| || | ||
Sbjct 159 AATCGTTTTCTCCATACATTTTTTTCTTGAAAGAATCCA--------TC-------T-TT 202
Query 249 TGGTTTTGCTTGTCCCTTAAATTCAGCCTCCTTCATACATAACGTCAAAGCTCAGATATC 308
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 203 TGGTTTTGCTTGTCCCTTAAATTCAGCCT-C--CATACATAACGTCAAAGCTCAGATATC 259
Query 309 TGAATAACTCGCTTGCGTGcctctctctctctaaaagcccatctctttctcctcctcctc 368
|||||||||||||||||||||||| | |||||||||||||||||| || | || | |||
Sbjct 260 TGAATAACTCGCTTGCGTGCCTCT-T-TCTCTAAAAGCCCATCTC-TT-T-CT--T-CTC 311
Query 369 ctccATTGAAGAAGAAACCTACCTTCGTAATATTTCCTCAATTACGATCATGGTGAATGT 428
|||||||||||||| || |||||| |||||||| |||||||||||||||||||||||
Sbjct 312 CTCCATTGAAGAAG-AA---ACCTTCATAATATTT-CTCAATTACGATCATGGTGAATGG 366
Query 429 TAAAGGGTCAACCAAAAAATCGAATCTTGATCGATTCCTTCATTGCATAACACCCTTAGT 488
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TAAAGGGTCAACAAAAAAATCGAATCTTGATCGATTCCTTCATTGCATAACACCCTTAGT 426
Query 489 GCCACCCCAATCTCTCCCCAAGACGGAGATTAGAACCCTAAATCGATTGTGGCATCCATG 548
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 427 GCCACCCCAATCTCTCCCCAAGGCGGAGATTAGAACCCTAAATCGATTGTGGCATCCATG 486
Query 549 GGAGAGACAAAAGGTTGAGTTTTTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATG 608
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GGAGAGAGAAAAGGTTGAGTTTTTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATG 546
Query 609 GAGCGCTTATGGAGCTAGCGTTCCTATTCATGTTACCAACGGAGAATCTCTTGTTCAATA 668
||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 547 GAGCGCTTATGGAGCTAGCGTCCCTATTCATATTACCAATGGAGAATCTCTTGTTCAATA 606
Query 669 CTATGTTCCTTATCTCTCTGCCATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGCTT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 607 CTATGTTCCTTATCTCTCTGCCATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGATT 666
Query 729 AAGGGAAGAGTCTGAAGATGGGGAATGTGAGGGTAGAGATCCGTTTAGCGATTCAGGTAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGGGAAGAGTCTGAAGATGGGGAATGTGAGGGTAGAGATCCGTTTAGCGATTCAGGTAG 726
Query 789 CGATGAGAGTGTCTCTGAGGAAGGACTTGAGAACAACACGCTCTTGCATCCAAGTGATCG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 727 CGATGAGAGTGTCTCTGAGGAAGGACTTGAGAACAACACGCTCTTGCATCCAAATGATCG 786
Query 849 TTTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATACCAGAGTTCCTCT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TTTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATACCAGAGTTCCTCT 846
Query 909 GATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCGT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCGT 906
Query 969 TGATCTTTCTCCAGCTAGTTGGATGTCAGTAGCATGGTACCCGATTTACCATATACCAAT 1028
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 907 TGATCTTTCTCCAGCAAGTTGGATGTCAGTAGCGTGGTACCCGATTTACCATATACCAAT 966
Query 1029 GGGAAGAACCATTAAAGACTTATCCACGTGTTTCCTCACTTATCACACTCTTTCCTCTTC 1088
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 967 GGGAAGAACCATTAAAGACTTATCCACTTGTTTCCTCACTTATCACACTCTTTCCTCTTC 1026
Query 1089 TTTTCAAGATATGGAACCGGAAGAAAATGGTGGGGACAAGGAGAGAGTGCGGAGGGAAGG 1148
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1027 TTTCCAAGATATGGAACCAGAAGAAAATGGTGGGGACAAGGAGAGGGTGCGGAGGGAAGG 1086
Query 1149 GGAAGATATAACTCTGCTCCCATTTGGGATGGCTACTTACAAGATGCAAGGCGATGTTTG 1208
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1087 GGAAGATATAACTCTGCTCCCATTCGGGATGGCTACTTACAAGATGCAAGGTGATGTTTG 1146
Query 1209 GCTTTCGCAGGACCACGATGATCAAGAGAGATTGGCTTCGCTTTACAGTGTTGCGGATTC 1268
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1147 GCTTTCGCAGGACCACGATGATCAAGAGAGATTGGCTTCGCTTTATAGTGTCGCGGATTC 1206
Query 1269 TTGGCTTAAACAGCTCAGGGTCCAACATCATGACTTCAACTACTTCTGCAATATGTCAAT 1328
|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1207 TTGGCTAAAACAGCTTAGGGTCCAACATCATGACTTCAACTACTTCTGCAGTATGTCAAT 1266
Query 1329 GACTCATCGTGGCTAAACCTCGGTTGGATGACACCATGATGTTTGCTTGTTTCCTCATAT 1388
||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1267 GACTCATCGTGGCTAAAACTCGGTTCGATGGCACCATGATGTTTGCTTGTTTCCTCATAT 1326
Query 1389 ATAGTCTAATTCTTGCTTTGTTCTGGAACCGCTTGCGTTTTGTAAAACGCAATGGAGCGA 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1327 ATAGTCTAATTCTTGCTTTGTTCTGGAACCGCTTGCGTTTTGTAAAACGCAATCGAGCGA 1386
Query 1449 TTCGCTTTGCAGTGTTTTGGTTAGAATAGCGTTTTGAGTCTTCTAACCTTTGAGAGAGTA 1508
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1387 TTCGCTTTGCAGTGTTTTGGTTAGAATAGCGTTTGGAGTCTTCTAACCTTTGAGAG--TA 1444
Query 1509 TATGTCGTATATAGAGTTTTGTTGCTTGTTGAAACAGAGTACAATTGTTGTTGCTTGTTA 1568
||||||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1445 TATGTCGTATATAGAGTTT-GTTGCTTGTTGAAACAGAGTA-A-TTGATGTTGCTTGTTA 1501
Query 1569 AAAACAGAGTGATTGTTTCTTATAAGTTGAAACATGGTGGAGAGAGAACTTTATTGTGCC 1628
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1502 AAAACAGAGTGATTGTTTCTTATAAGTTGAAACATGGTGGAGAGAGAACTTGAGTGTGCC 1561
Query 1629 AACAGTACCGTTACTGAAATAGTAATGTAACGAACTAATCATGTT 1673
| ||||||||||||||||||||||||||||||||| || ||||
Sbjct 1562 T-CGGTACCGTTACTGAAATAGTAATGTAACGAACTAGTCTTGTT 1605
> Ahg943368 jgi|Araly1|943368|scaffold_603912.1
Length=985
Score = 850 bits (460), Expect = 0.0
Identities = 809/969 (83%), Gaps = 58/969 (6%)
Strand=Plus/Plus
Query 415 ATCATGGTGAATGTTAAA-GGGTCAAC-CAAAAAATCGAATCTTGATC-GATTCCTTCAT 471
||||||||| || ||| |||||||| | ||||||| || ||||| | |||||||||||
Sbjct 18 ATCATGGTGTTTG-GAAATGGGTCAACGC-AAAAATCAAACCTTGA-CAGATTCCTTCAT 74
Query 472 TGCATAACACCCT-TAGTGCCACCCCAATCTCTCCCCAAGACGGAGATTAGAACCCTAAA 530
|||| |||| ||| |||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 75 TGCACAACA-CCTGTAGTGCCACCCCAATCTCTCCCCAAGGCGGAGATTAGGAGTTTGAA 133
Query 531 TC-GATTGTGGCATCCATGGGAGAGACAAAAGGTTGAGTTTTTCAGGTTGAGTGATTTGT 589
|| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct 134 TCGGATT-TGGCATCCATGGGAGAGAGAAAAGGTTGAGTTTTTCAGATTGAGTGATCTAT 192
Query 590 GGGATTGTTATGATGAATGGAGCGCTTATGGAGCTAGCGTTCCTATTCATGTTACCAACG 649
|||||||||| ||||||||||| |||||||||||| | |||||||||| | | || || |
Sbjct 193 GGGATTGTTACGATGAATGGAGTGCTTATGGAGCTGGTGTTCCTATTCGTCTCACTAATG 252
Query 650 GAGAATCTCTTGTTCAATACTATGTTCCTTATCTCTCTGCCATCCAGATTTTCACCTCTC 709
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 253 GAGAATCTCTTGTTCAATATTATGTTCCTTATCTCTCTGCTATTCAGATTTTCACCTCTC 312
Query 710 ATTCCTCCTTGATCCGCTTAAGGGAAGAGTCTGAAGATGGGGAATG-TGAG-----GGTA 763
||| |||||||||||||| ||||| || ||||||||||||||| | ||| ||
Sbjct 313 GTTCTTCCTTGATCCGCTTTAGGGATGACTCTGAAGATGGGGAAAGCAGAGATTCCTTTA 372
Query 764 GAGATCCGTTTAGCGATTCAG-GT---AGCGAT-GA-----GAG-TGT-C-TCTGAGGAA 810
| ||| | | ||| || | || || || ||| | ||| ||| | |||||||||
Sbjct 373 GTGATTCATATAGTGA-TGAGAGTGAAAGTGATAAACTTTCGAGATGTGCTTCTGAGGAA 431
Query 811 GGACTTGAGAACA--ACACGCTCTTGCATCC-AAGTGATCGTTTGGGTTATCTTTATCTC 867
|||||| ||||| || | ||||||||||| || |||||| ||||| |||||||||||
Sbjct 432 GGACTT--GAACATGACGCTCTCTTGCATCCGAA-TGATCGCTTGGGATATCTTTATCTG 488
Query 868 CAATACTTTGAGAGATCAGCTCCTTATAC-CAGAGTTCCTCTGATGGATAAGATCAATGA 926
||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||||
Sbjct 489 CAATACTTTGAGAGATCAGCTCCTTATGCTC-GAGTTCCTCTCATGGATAAGATCAATGA 547
Query 927 ATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCGTTGATCTTTCTCCAGCTAG 986
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || || ||
Sbjct 548 ATTGGCTCAAAGGTACCCTGGATTAATGTCGTTGAGAAGCGTAGATCTTTCCCCGGCAAG 607
Query 987 TTGGATGTCAGTAGCATGGTACCCGATTTACCATATACCAATGGGAAGAACCATTAAAGA 1046
||||||| | ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 608 TTGGATGGCGGTAGCGTGGTACCCAATTTACCATATTCCAATGGGAAGGACCATCAAAGA 667
Query 1047 CTTATCCACGTGTTTCCTCACTTATCACACTCTTTCCTCTTCTTTTCAAGATATGGAACC 1106
|| ||||| |||||||| | ||||||||||||||| |||||||| ||||||||||| ||
Sbjct 668 TTTGTCCACTTGTTTCCTTAGTTATCACACTCTTTCATCTTCTTTCCAAGATATGGAGCC 727
Query 1107 GGAAGAAAATGGTGGGGACAAGGAGAG-AGTGCGGAGGGAAGGGGAAGATATAACTCTGC 1165
||||||||||| ||||| |||||||| | | |||| |||||| |||| | ||||| |||
Sbjct 728 AGAAGAAAATGGCGGGGAAAAGGAGAGGA-TCCGGAAGGAAGGAGAAGGTGTAACTTTGC 786
Query 1166 TCCCATTTGGGATG-GCTACTTACAAGATGCAAGGCGATGTTTGGCTTTCGCAGGACCA- 1223
| || ||||| || || |||||||||||||||||| |||||||||| ||| | ||| |
Sbjct 787 TTCCTTTTGG-ATTAGCCACTTACAAGATGCAAGGCAATGTTTGGCTCTCGGAAGACGAT 845
Query 1224 CGA--T---GATCAAGAGAGATTGGCT-TCGCTT-TACAGTGTTGCGGATTCTTGGCTTA 1276
| | | ||||||||| || | || |||||| || |||||||||||||||||||| |
Sbjct 846 CAAGGTCAAGATCAAGAGCGAGTA-CTGTCGCTTCTA-AGTGTTGCGGATTCTTGGCTAA 903
Query 1277 AACAGCTCAGGGTCCAACATCATGACTTCAACTACTTCTGCAATATGTCAATGACTCATC 1336
||||||| || |||||||| ||||||||||||||||||| ||| | |||| |||| |
Sbjct 904 AACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCT-CAA---G--AATGGCTCACC 957
Query 1337 GTGGCTAAA 1345
|||||||||
Sbjct 958 GTGGCTAAA 966
> Ahg491960 jgi|Araly1|491960|fgenesh2_kg.7__1393__AT4G28150.1
Length=1231
Score = 187 bits (101), Expect = 2e-46
Identities = 498/681 (73%), Gaps = 62/681 (9%)
Strand=Plus/Plus
Query 446 AATCGAATCTTGATCGATTCCTTCATTGCA-TAACACC-CTTAGTGCCACCCCAATCTCT 503
|||| || || || |||||||| | |||| | ||||| || || || || | || ||
Sbjct 114 AATCTAACCTAGACCGATTCCTACGCTGCACT-ACACCAATT-GTCCCTGCCTATTCCCT 171
Query 504 CCCCAAGACGGAGAT-TAGAACCCTAAATCGAT-TGTGGCATCCATGGGAGAGACAAAAG 561
||| ||||| |||| |||| ||| ||||| | | ||| | || | |||||| | | ||
Sbjct 172 CCCAAAGACACAGATCAAGAA-CCTGAATCG-TCTATGGTACCCTTTGGAGAG-CCAGAG 228
Query 562 -GTTGAGTTTTTCAGGTTGAGTGATTTGTGGGATTGTTAT-GATGAATGGAGCGCTTATG 619
|| |||| |||||||||| | ||||| |||||||||| | || || ||||||||||| |
Sbjct 229 CGTAGAGTATTTCAGGTTGGGAGATTTTTGGGATTGTT-TCGACGAGTGGAGCGCTTACG 287
Query 620 GAGCTA-GCGTTCCTATTCATGTTACCAA-CGGAGA-ATCTCTT-GTTCAATACTATGTT 675
| || | | || || ||| | | || ||| || | | || || || |||||||||
Sbjct 288 GTGC-AGGTGTCCCCATT-GTCTCGGAAACCGGCGAGA-C-ATTGGTCCAGTACTATGTT 343
Query 676 CCTTATCTCTCTGCCATCCAGATTTTCACCTCTCATTCC-TCCTTGATCCGCTTAAGGGA 734
||||| |||||||||||||||||||||||||||||||| | || || | || ||||||
Sbjct 344 CCTTACCTCTCTGCCATCCAGATTTTCACCTCTCATTCTGTTCTCAATGCTCT-AAGGGA 402
Query 735 AGAGTCTGAAG-ATGGGGAATGTGAGGGTAGAGA-TCCGTTTAGCGATTCAGGTAGCGAT 792
||| | ||| | ||||| | | |||| || || || | |||||| || | | |||
Sbjct 403 GGAGACGGAATCA-GGGGA-T-TCAGGG-AGTGAGTCA-TGTAGCGAGG-AG-TGGAGAT 455
Query 793 GAGA-G--TGT-CT-C-T--GAGGAAGGACTTGAGAA-CAACACGCTCTTGCATCCAAGT 843
| || | ||| || | | ||||||||| |||| | ||| | | || | || |
Sbjct 456 GGGAAGGATGTTCTTCGTCTGAGGAAGGATTTGATCATCAAGAA-C-CT--C-TC---G- 506
Query 844 GATCGTTTGGGTTA-TCTTTATCTC-CAATACTTT-GAGAGATC-AGCTCCTTA-TACCA 898
|||| | ||||| |||| | || || || ||| ||||||| | | ||||| | | |
Sbjct 507 -ATCGCCTCGGTTACTCTT-A-CTTGCAGTA-TTTCGAGAGATGTA-CACCTTACT-CTA 560
Query 899 GAGTTCCTCTGATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGT 958
|||| ||||| |||||||||||||| || |||| ||||| || | || |||| ||| |
Sbjct 561 GAGTCCCTCTCATGGATAAGATCAAAGAGTTGGGAGAAAGACACGCAGGCTTGAGGTCAT 620
Query 959 TGAGAAGCGTTGATCTTTCTCCAGCTAGTTGGATGTCAGTAGCATGGTACCCGATTTACC 1018
||||||| |||||||| ||||| || ||||||||| | || || ||||| || || || |
Sbjct 621 TGAGAAGTGTTGATCTGTCTCCTGCGAGTTGGATGGCTGTTGCTTGGTATCCAATCTATC 680
Query 1019 ATATACCAATGGGA-AGAACCATTAAAGACTTATCCACGTGTTTCCTCACTTATCACACT 1077
| || || ||| | |||| ||| |||||||| || || || ||||||||||| |||||
Sbjct 681 ACATTCCCATGA-ATAGAAGCATAAAAGACTTGTCTACTTGCTTCCTCACTTACCACACG 739
Query 1078 CTTTCCTCTTCTTTTCAAGAT 1098
||||| || ||||| ||||||
Sbjct 740 CTTTCTTCATCTTTCCAAGAT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5