BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03620.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910024 jgi|Araly1|910024|Al_scaffold_0001_278 1347 0.0
> Ahg910024 jgi|Araly1|910024|Al_scaffold_0001_278
Length=798
Score = 1347 bits (729), Expect = 0.0
Identities = 776/799 (97%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 63 ATGAAGCGTGGGAAAGGCGAGAAAAAGGCAACAAAGAGCCGCGATGGCAGCGGTCAAGTA 122
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGAAGCGCGGGAAAGGCGAGAAAAAGGCAACAAAGAACCGCGATGGCAGCGGTCAAGTA 60
Query 123 GTTCCGCTCACTGAACCAGTGGTTACAGCTACGGGTATGGTTGGAACAAGATCATGGATA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCCGCTCACTGAACCAGTGGTTACAGCTACGGGTATGGTTGGAACAAGATCATGGATA 120
Query 183 GGAGGGCTCTTCACACGCTCCAATAGACGTCAAGACAAGGCAGTCGACTACACTTTGTCT 242
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 121 GGAGGGCTCTTCACACGCTCCAATAGACGTCAAGAAAAGTCAGTCGAATACACTTTGTCT 180
Query 243 CCTCTTCAGGAGGAAAGACTTCAAAGGCTGCAAGATCGTATGGTTGTACCTTTCGACGAG 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCTCTTCAGGAGGAAAGACTTCAAAGGCTACAAGATCGTATGGTTGTACCTTTCGACGAG 240
Query 303 ACACGTCCTGATCATCAGGAATCACTTAAAGCATTGTGGAACGTCGCGTTTCCGAATGTT 362
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACACGCCCGGATCATCAGGAATCACTTAAAGCATTGTGGAATGTCGCGTTTCCGAATGTT 300
Query 363 CA-TCTCACGGGTTTAGTAACAGAACAATGGAAAGAAATGGGATGGCAAGGTCCCAATCC 421
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 -AGTCTCACAGGTTTAGTAACAGAACAATGGAAAGAAATGGGATGGCAAGGTCCCAATCC 359
Query 422 ATCTACCGATTTCAGGGGTTGCGGATTTATCGCTCTAGAAAATTTACTATTTTCTGCAAG 481
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 360 ATCTACCGATTTCAGGGGTTGCGGATTTATCGCTCTAGAGAATTTGCTATTTTCTGCAAG 419
Query 482 AACTTATCCGGTTTGTTTCCGGAGGCTATTGTTAAAACAAAGAGGCGACCGGGCAAAGTG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACTTATCCGGTTTGTTTCCGGAGGCTATTGTTAAAACAAAGAGGCGACCGGGCAAAGTG 479
Query 542 GGAGTACCCTTTTGCAGTGGCCGGAATCAACATCTCCTTCATGTTGATCCAAATGCTCGA 601
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 GGAGTACCCTTTTGCGGTGGCCGGAATCAACATTTCCTTCATGTTGATCCAAATGCTCGA 539
Query 602 TTTACAAAATAATCCAAAGCCAAAATGTCTTCCAGGAATGAATTTCCTCAAACTCTTAGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTACAAAATAATCCAAAGCCAAAATGTCTTCCAGGAATGAATTTCCTCAAACTCTTAGA 599
Query 662 AGAAGACGAGAGGGCATTCGATGTACTATACTGTATAGCTTTCGCGATGATGGATGCTCA 721
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 AGAAGACGAGAAAGCATTCGATGTACTATACTGTATAGCTTTCGCAATGATGGATGCTCA 659
Query 722 ATGGCTTGCAATGCACGCTTCTTACATGGAATTCAATGAAGTATTACAAGCAACTCGGAA 781
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 660 ATGGCTTGCAATGCACGCTTCTTACATGGAATTCAATGAAGTATTACAGGCGACTCGGAA 719
Query 782 TCAGCTGGAGAGAGAGCTTTCTTTGGATGATATTCATCGGATTCAAGATCTTCCTGCCTA 841
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TCAGCTAGAGAGAGAGCTTTCTTTGGATGATATTCATCGGATTCAAGATCTTCCTGCATA 779
Query 842 CAATCTCTTGTTCCAATAG 860
|||||||||||||||||||
Sbjct 780 CAATCTCTTGTTCCAATAG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5