BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03630.1
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470335 jgi|Araly1|470335|fgenesh2_kg.1__289__AT1G03630.1 2126 0.0
> Ahg470335 jgi|Araly1|470335|fgenesh2_kg.1__289__AT1G03630.1
Length=1342
Score = 2126 bits (1151), Expect = 0.0
Identities = 1269/1327 (96%), Gaps = 4/1327 (0%)
Strand=Plus/Plus
Query 4 TCGGGGAAAATCGAAGACACTGTGACACTCTAGCACCTTCAGTTCCGTACAACAATGGCT 63
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGGCGAAACTCGAAGACACTGTGACACTCTAGCACCTTCAGTTCCGTACAACAATGGCG 60
Query 64 CTCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGGGCAAATTC 123
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTCCAAGCGGCCTATTCTCTTCTTCCTTCAACCATTTCAATCCAAAAAGAGGGCAAATTC 120
Query 124 AATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTTTCAAACCATCTTAGAGCT 183
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 121 AATGCTTCTCTAAAGGAGACGACTTTAACTGGTTCTTCATTTTCCAACCATCTTAGAGCC 180
Query 184 GAAAAGATATCCACCCTGTTGACCATCAAGGAACAGAGAAGACAGAAA-CCGCGATTTTC 242
|| ||||| ||||| ||||| ||||||||||||||||||||||| ||| |||||| ||||
Sbjct 181 GACAAGATCTCCACACTGTTAACCATCAAGGAACAGAGAAGACA-AAAGCCGCGACTTTC 239
Query 243 CACCGGTATTCGTGCACAGACAGTTACAGCCACGCCGCCGGCAAACGAAGCATCGCCGGA 302
||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 240 TACCAGTATTCGTGCACAGACAGTTACAGCCACGCCGCCGGCAAGCGAGGCATCCCCGGA 299
Query 303 GCAAAAGAAGACTGAGAGAAAAGGCACTGCAGTGATCACTGGAGCTTCGTCTGGTTTAGG 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GCAAAAGAAGACTGAGAGAAAAGGCACTGCAGTTATCACTGGAGCTTCGTCTGGTTTAGG 359
Query 363 TTTAGCTACGGCCAAAGCTTTAGCAGACACAGGGAAATGGCATGTGATCATGGCTTGCAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TTTAGCTACGGCCAAAGCTTTAGCAGACACAGGGAAATGGCATGTGATCATGGCTTGTAG 419
Query 423 GAACTTTCTCAAGGCCGAGAAGGCAGCGAGATCTGTTGGAATGTCCAAGGAAGATTACAC 482
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 420 GAACTTTCTCAAGGCCGAGAAAGCAGCGAGATCTGTAGGAATGTCTAAGGAAGATTACAC 479
Query 483 AGTGATGCATCTTGATCTTGCTTCGCTTGAAAGCGTGAAGCAATTCGTTGAAAATTTCCG 542
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TGTGATGCATCTTGATCTTGCTTCGCTTGAAAGCGTGAAGCAGTTCGTTGAAAATTTCCG 539
Query 543 GAGAACAGAACAACCACTCGATGTTCTTGTCTGCAATGCCGCGGTTTACCAACCAACTGC 602
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GAGAACAGAACAACCCCTCGATGTTCTTGTCTGCAATGCTGCGGTTTACCAACCAACTGC 599
Query 603 TAAAGAGCCTTCTTTTACAGCTGAAGGCTTTGAGATAAGCGTTGGAACCAACCATCTCGG 662
|||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 TAAAGAACCATCTTTTACAGCTGAAGGCTTTGAGCTAAGCGTTGGAACCAACCATCTCGG 659
Query 663 TCACTTTCTTCTCTCAAGATTGCTTCTTGATGACCTGAAAAAATCTGATTATCCATCAAA 722
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TCACTTTCTTCTTTCAAGATTGCTTCTTGATGACCTGAAAAAATCGGATTATCCATCAAA 719
Query 723 ACGTATGATCATCGTAGGATCTATAACAGGAAACACAAATACTTTGGCTGGGAATGTACC 782
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 ACGTATGATCATCGTAGGATCTATAACAGGAAACACAAATACTTTGGCTGGAAATGTACC 779
Query 783 GCCAAAGGCAAACCTTGGAGACCTAAGAGGCTTAGCGTCAGGATTGAATGGGCAAAACAG 842
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 GCCAAAGGCAAACCTTGGTGACCTAAGAGGCTTAGCATCAGGATTGAATGGGCAAAACAG 839
Query 843 TTCAATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCTTACAAAGACAGCAAAGTATG 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 TTCAATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCTTACAAAGACAGCAAAGTCTG 899
Query 903 CAATATGCTGACAATGCAGGAGCTTCACAGACGTTACCACGAGGAAACAGGAGTCACGTT 962
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 CAATATGTTGACAATGCAGGAGCTTCACAGACGTTACCACGAGGAAACCGGAGTCACGTT 959
Query 963 TGCTTCTCTTTACCCTGGTTGCATCGCTACAACAGGGTTGTTCAGAGAACACATACCGCT 1022
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 960 TGCCTCTCTTTACCCTGGTTGCATTGCTACAACAGGGTTGTTCAGAGAACACATACCGTT 1019
Query 1023 GTTTCGGCTTCTTTTTCCGCCTTTTCAAAAGTATATCACCAAAGGTTACGTATCTGAAGA 1082
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 GTTTCGGCTTCTTTTTCCGCCTTTTCAAAAGTATATCACCAAAGGTTATGTATCTGAAGA 1079
Query 1083 GGAAGCTGGCAAAAGACTAGCACAGGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGT 1142
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 GGAAGCTGGGAAAAGACTAGCACAGGTTGTGAGTGACCCTAGTCTTGGAAAGTCAGGAGT 1139
Query 1143 GTATTGGAGTTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTTTCTAAAGAAGCAAG 1202
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 GTATTGGAGCTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTCTCTAAAGAAGCAAG 1199
Query 1203 TGATGCGGAGAAGGCAAAGAAACTGTGGGAGGTTAGCGAGAAGCTTGTTGGTTTGGCATG 1262
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1200 TGATGCAGAGAAGGCAAAGAAACTGTGGGAGGTTAGCGAGAAGCTTGTTGGTTTGGCTTG 1259
Query 1263 AACTCAAGATTTTTGATATGCAAATTCATATAGATTACTATGTTT-TGTGACATGTACAA 1321
|| | |||||||||||||| ||||||||||||| ||||||||||| | |||||||||| |
Sbjct 1260 AAATTAAGATTTTTGATATTCAAATTCATATAGGTTACTATGTTTCT-TGACATGTACCA 1318
Query 1322 TAAGTAT 1328
||| |||
Sbjct 1319 TAACTAT 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52107455160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5