BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03650.1
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311459 jgi|Araly1|311459|fgenesh1_pm.C_scaffold_1000239 688 0.0
> Ahg311459 jgi|Araly1|311459|fgenesh1_pm.C_scaffold_1000239
Length=477
Score = 688 bits (372), Expect = 0.0
Identities = 443/478 (93%), Gaps = 2/478 (0%)
Strand=Plus/Plus
Query 91 ATGGACAAA-GGAGTTGTGGTAGAGCTGATTAGAGGGTCGACCAGTTGGGCCAAAGTTGT 149
||||| ||| ||| |||| ||||| ||||||||||||||||||| || | ||||||||||
Sbjct 1 ATGGA-AAAGGGAATTGTAGTAGAACTGATTAGAGGGTCGACCAATTTGACCAAAGTTGT 59
Query 150 GGAAGATATCGTGAAGCTGGAGAAGAAAACGTTCCCTAAACACGAATCTCTCGCTCAAAC 209
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGAAGATATCGTGAAGCTGGAGAAGAAAACGTTCCCTAAACACGAATCTCTCGCTCAAAA 119
Query 210 TTTCGATGCAGAGCTGCGTAAGAAAAACGCCGGTTTGCTATACGTGGATGCTGAAGGAGA 269
|||||| ||||||||||| |||| |||||||||||||||||| ||||| || || |||||
Sbjct 120 TTTCGACGCAGAGCTGCGCAAGAGAAACGCCGGTTTGCTATATGTGGAAGCCGACGGAGA 179
Query 270 CACAGTAGGCTATGCCATGTATTCTTGGCCATCTTCGCTTTCCGCTTCAATCACCAAGCT 329
||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 180 AACAGTGGGCTATGTTATGTATTCTTGGCCATCTTCACTTTCCGCTTCCATCACCAAGCT 239
Query 330 CGCAGTGAAGGAGAATTGCAGAAGACAAGGTCATGGAGAAGCATTGTTGAGAGCGGCTAT 389
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGCAGTGAAGGAGAATTGGAGGAGACAAGGTCATGGAGAAGCATTGTTGAGAGCGGCTAT 299
Query 390 CGACAAGTGCAGAAGCAGAAAGGTGCAACGGGTTTCACTTCATGTCGACCCCACGAGAAC 449
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CGAAAAGTGCAGAAGCAGGAAGGTGCAGCGGGTTTCACTTCATGTCGACCCCACGAGAAC 359
Query 450 TTCTGCGGTGAATCTGTACAAAAAGCTTGGGTTCCAAGTAGACTGTCTAGTGAAAAGCTA 509
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||| ||||
Sbjct 360 TTCTGCGGTGAATCTGTACAAAAAACTTGGGTTCCAAGTAGACTGTCTGGTTAAAGGCTA 419
Query 510 CTACTCGGCTGATAGAGATGCTTACAGAATGTACCTAGATTTTGATGACTCTATTTAG 567
|||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 CTACTCTACCGATAGAGATGCTTACAGAATGTACCTAGATTTTGATGACTCCATTTAG 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29278400256
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5