BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03670.1

Length=1851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919055 jgi|Araly1|919055|scaffold_100336.1                        339    6e-92
  Ahg919028 jgi|Araly1|919028|scaffold_100309.1                        220    2e-56


> Ahg919055 jgi|Araly1|919055|scaffold_100336.1
Length=268

 Score =  339 bits (183),  Expect = 6e-92
 Identities = 226/247 (91%), Gaps = 2/247 (1%)
 Strand=Plus/Plus

Query  1606  TTAACAGCTGTTGTATCAATGATGA-TGGCATCTGTGGCTGGACTTACTCTTGTGGTGAG  1664
             ||||| ||| |||| || ||||  | ||||||||||||||||| ||||||||||| ||||
Sbjct  3     TTAACGGCTATTGTTTCTATGA-CAGTGGCATCTGTGGCTGGAATTACTCTTGTGATGAG  61

Query  1665  CGATCTCCCATGGCTTTCCCATCTTGTATTAGCCATAGATTCAGCCTTCTTGGTATTCCT  1724
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct  62    CGATCTCCCATGGCTTTCCCATCTTGTATTAGCCATTGATTCAGCCTTCTTGGTAGTCCT  121

Query  1725  GATGCTACTTATCATTCCTTACGCTTTCTCGTCTACAAGACATGGCTTTCTCAGACATAT  1784
             ||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||
Sbjct  122   GATGCTACTTATCATTCCTTATGCTTTCTCGTCTACAAGGCAAGGTTTTCTCAGACACAT  181

Query  1785  CTTCTACTTTCCTTATTTCTTGATGCTTTTGGTTGTTAGCGAAGGCAGCAACAACATGGA  1844
             ||||||||||||| ||||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct  182   CTTCTACTTTCCTCATTTCTTGATGCTTTTGGTGGTTAACGAAGACAGTAACAACATGGA  241

Query  1845  TGGTTAA  1851
             |||||||
Sbjct  242   TGGTTAA  248


> Ahg919028 jgi|Araly1|919028|scaffold_100309.1
Length=217

 Score =  220 bits (119),  Expect = 2e-56
 Identities = 131/137 (96%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  1607  TAACAGCTGTTGTATCAATGATGATGGCATCTGTGGCTGGACTTACTCTTGTGGTGAGCG  1666
             |||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  1     TAACGGCTATTGTATCAATGATGATGGCATCTGTGGCTGGAATCACTCTTGTGGTGAGCG  60

Query  1667  ATCTCCCATGGCTTTCCCATCTTGTATTAGCCATAGATTCAGCCTTCTTGGTATTCCTGA  1726
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  61    ATCTCCCATGGCTTTCCCATCTTGTATTAGCCATAGATTCAGCCTTCTTGGTAATCTTGA  120

Query  1727  TGCTACTTATCATTCCT  1743
             |||||||||||||||||
Sbjct  121   TGCTACTTATCATTCCT  137



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 69514697125


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5