BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03680.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470338 jgi|Araly1|470338|fgenesh2_kg.1__292__AT1G03680.1 987 0.0
Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1 368 4e-101
> Ahg470338 jgi|Araly1|470338|fgenesh2_kg.1__292__AT1G03680.1
Length=794
Score = 987 bits (534), Expect = 0.0
Identities = 703/781 (90%), Gaps = 25/781 (3%)
Strand=Plus/Plus
Query 98 ATCTTCTTCGTT-TGGATATTATTACATTTGGGACTCAAGAAGAAATCGAATCTATCGTG 156
||||||||| || |||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 23 ATCTTCTTC-TTCTGGATATTATTACATTTGGGACTCAAGAAG-AATCGAATCT-T-G-A 77
Query 157 TGTG-TAGAT-TGCT-TCTCTCTATCTCT-TCTCTCGCTACACAACAATGGCTGCTTACA 212
| || | | | || ||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 78 T-TGCT-TCTCT-CTCTCTCTCTATCTCTATCTCTCTCTACACAACAATGGCTGCTTTCA 134
Query 213 CGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATCGCTTCCTCGCCGA 272
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 135 CTTGTACTTCCCGTCCGCCGATTTCAATCCGGTCAGAGATGAGAATCGCTTCCTCGCCGA 194
Query 273 CGGGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTGCCGGAATCGAGCGGATTGAGGA 332
|| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 195 CGTGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTACCTGAATCCTGCGGATTGAGGA 254
Query 333 CTCGCGTTTCTCTATCTTCACTCTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGCG 392
||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 255 CTCGCGTTTCTCTCTCTTCGGTTTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGCG 314
Query 393 TTATCTGTGAAGCTCAGGACACTGCTACAGGAATTCCAGTGGTCAACGATTCAACATGGG 452
||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 315 TTATCTGCGAAGCCCAGGAAACTGCAACAGGAATTCCAGTGGTCAACGATTCAACATGGG 374
Query 453 ACTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGTG 512
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 375 AGTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCTCCATGGTGTG 434
Query 513 GACCCTGCAAAATGATTGATCCCATTGTCAACGAACTCGCGCAAAAGTACGCCGGCCAGT 572
|||| |||||||||||||||||||||||||||||| | || ||| |||| || || |||
Sbjct 435 GACCTTGCAAAATGATTGATCCCATTGTCAACGAATTGGCACAACAGTATGCAGGGAAGT 494
Query 573 TCAAGTTCTACAAACTTAACACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTTA 632
|||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 495 TCAAGTTCTACAAACTTAACACTGATGATTCTCCTTCAACCCCTAGCCAGTATGGTGTTA 554
Query 633 GAAGCATCCCAACTATCATGATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGTG 692
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 555 GAAGCATCCCAACTATCATGATCTTTGTCAAGGGTGAGAAGAAGGATACAATCATCGGTG 614
Query 693 CTGTCTCTAAAGACACTTTAGCAACCAGCATCAACAAATTCTTGTAATGAACTACTAGTC 752
| || |||||| || |||||||||||||||| ||||||||||||||| || | ||| |
Sbjct 615 CAGTGTCTAAATCCATTTTAGCAACCAGCATCGACAAATTCTTGTAATCAAGT-CTATTA 673
Query 753 ACTGT-TCTCTTTTCTCTGTATCTCTCGACTCTCTACCTTTTACCTATCTACTC----A- 806
| || ||||||||||||||||||||| | ||| ||||||||||||||||||| |
Sbjct 674 AAGGTCTCTCTTTTCTCTGTATCTCTCAAGTCTGAACCTTTTACCTATCTACTCCCCCAC 733
Query 807 TCA-C--TGTTCATCTAGACTTGTATGATAATAT--GATGTCTCAGGTTTTCAGAATTTG 861
||| | ||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 734 TCATCACTGTTCATCTAGACTTGTATGATAATATATGATGTCTCAGATTTTCAGAAATTG 793
Query 862 A 862
|
Sbjct 794 A 794
> Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1
Length=851
Score = 368 bits (199), Expect = 4e-101
Identities = 457/575 (79%), Gaps = 44/575 (8%)
Strand=Plus/Plus
Query 200 ATGGCTGCTTACACGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATC 259
|||||||||| ||| ||||| || ||||| ||||||||| |||| || |||| | ||||
Sbjct 91 ATGGCTGCTTTCACTTGTACCTCTCGTCCTCCGATTTCTCTCCGTTCTGAGACCAAAATC 150
Query 260 GCTTCCTCGCCGA-CGGGTTC--CT-TCTCTACTCGACAGATGTTCTCTGTGTTGCCGGA 315
|| ||| | || | ||| ||| || ||||| |||| | ||||||| | ||||| |||||
Sbjct 151 GCATCCACACC-ATCGGCTTCTTCTCTCTCTTCTCGGCGGATGTTCGCCGTGTTACCGGA 209
Query 316 ATCGAGC-GGATTGAGGACT-CG-CGTTTCTC--TAT----CTTC----ACTCTCGA--- 359
||| | | || |||| || | || | |||||| | | |||| || |||||
Sbjct 210 ATC-ATCAGGTTTGA-GAATCCGTC-TTTCTCTTTCTCCGGCTTCGTTGAC-CTCGATTC 265
Query 360 A-GA--ATTCTAGGGTTTCCCGATTACGACGAGGC-GTTATCTGTGAAGCTCAGGACACT 415
| | || |||||||||| ||||| ||| || || || |||||||||| ||||| |||
Sbjct 266 ATCATCATCCTAGGGTTTCTCGATTGCGAAGA-GCTGTCGTCTGTGAAGCCCAGGAAACT 324
Query 416 GCTACAGGA-ATTCCAGTGGTCAACGATTCAACATGGGACTCTCTAGTTCTCAAGGCTGA 474
|||| || |||||||||||||| || ||||||||||||||||||||||| ||||| ||
Sbjct 325 ACTAC-CGATATTCCAGTGGTCAATGACTCAACATGGGACTCTCTAGTTCTTAAGGCAGA 383
Query 475 TGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGTGGACCCTGCAAAATGATTGATCC 534
|| |||||| || ||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 384 TGGGCCTGTATTGGTCGACTTTTGGGCACCATGGTGTGGACCTTGCAAGATGATTGA-CC 442
Query 535 CAT-T-GTCAACGAACTCGCGCAA-AAGTACGCCGGCCAGTTCAAGTTCTACAAACTTAA 591
| | | || || || || || ||| || ||| |||| || |||||||||||||||| ||
Sbjct 443 C-TCTCGTGAATGATCTAGCACAACAA-TACACCGGGAAGATCAAGTTCTACAAACTAAA 500
Query 592 CACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTTAGAAGCATCCCAACTATCAT 651
||| ||||| |||||| ||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 501 CACCGATGAATCTCCTTCAACCCCAAGCCAGTATGGAGTTAGAAGCATCCCAACGATCAT 560
Query 652 GATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGTGCTGT-CTCTAAAG--ACAC 708
||||||||||||||| |||||||||||||||||||| ||||| || | | ||| ||||
Sbjct 561 GATCTTTGTCAATGGCGAGAAGAAGGATACAATCATAGGTGCAGTGC-CAAAAACCACAC 619
Query 709 TTTAGCAACCAGCATCAACAAATTCTTGTAATGAA 743
| | || | ||||| |||| |||||| ||||||
Sbjct 620 TC-A-CATCTAGCATTGACAAGTTCTTGCAATGAA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5