BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03687.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910029 jgi|Araly1|910029|Al_scaffold_0001_283 1044 0.0
> Ahg910029 jgi|Araly1|910029|Al_scaffold_0001_283
Length=1224
Score = 1044 bits (565), Expect = 0.0
Identities = 601/619 (97%), Gaps = 0/619 (0%)
Strand=Plus/Plus
Query 537 GGATTTTCTACGCCAGAACAACACAGGGAAGCTGTTGTGGCAGATATTTGGCGTCCAATC 596
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 606 GGATTTCCTACGCCAGAACAACACAGGGAAGCTATTGTGGCAGATATTTGGCGTCCAATC 665
Query 597 AGCTACACTCTGCGTCTTTGGAATAGCTGAAGACGAAGAGATCATGTGGAATGAATTCAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGCTACACTCTGCGTCTTTGGAATAGCTGAAGACGAAGAGATCATGTGGAATGAATTCAA 725
Query 657 GCGTGCAGGAAAAAGCCAAGTCCGTTGCCTCTATCCCAACCACAACTCGGAAGTAACTTT 716
||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 726 GCGGGCAGGAAAAAATCAAGTCCGTTGCCTCTATCCCAACCACAACTCGGAATTAACTTT 785
Query 717 CTCGGTTAAAGACGCTTTTGGTAGTTCGGCTTCAGAGAATCATGTATCATCCACGACAGA 776
||||||||||||||||||||||| | ||||||||||||||| || |||||||| ||||||
Sbjct 786 CTCGGTTAAAGACGCTTTTGGTACTACGGCTTCAGAGAATCCTGGATCATCCATGACAGA 845
Query 777 TGAGGATAAAACTCTGCATTTCATTTTGCTTGATGGCACGTGGAACAATTCTGCTGCAAT 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TGAAGATAAAACTCTGCATTTCATTTTGCTTGATGGCACGTGGAACAATTCTGCTGCAAT 905
Query 837 GCTCAAGCGTTTAAAGGATCATGCAAAGTCAGTATGGGGAGACGAAGATCTTCCTTGTAT 896
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 906 GCTCAAGCGTTTAAAGGATCATGCAAAGGCAGTATGGGGAGATGAAGATCTTCCTTGTAT 965
Query 897 ATCTCTTGCAACCGGTGCATCCGCAATGCACAAACTCCGGCCACAACCATCATGGGACCG 956
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 966 ATCTCTTGCAACCGGTGCATCAGCAATGCACAAACTCCGACCACAACCATCATGGGACCG 1025
Query 957 GACCTGCACGGCTGCAGCAGCAATTGGACTCCTATCTGAGCTTAGCCTTCTCCCACAGTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GACCTGCACGGCTGCAGCAGCAATTGGACTCCTATCTGAGCTTAGCCTTCTCCCACAGTT 1085
Query 1017 AAGCAGCTACGAGTTAGACAAACAAGCTGATGCAGTCGAGGAAGCTTTGGTCATACTACT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AAGCAGCTACGAGTTAGACAAACAAGCTGATGCAGTCGAGGAAGCTTTGGTCATACTACT 1145
Query 1077 GGACTCACTAACAGGTCGCCGCTTAAGAATGGGCAGGTCAATAACTCGTAAAGGCAGAAA 1136
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1146 GGACTCACTAACAGGACGCCGCTTAAGAATGGGCAGGTCCATAACTCGTAAAGGCAGAAA 1205
Query 1137 CACCATCAGCATGTGCTAA 1155
|||||||||||||||||||
Sbjct 1206 CACCATCAGCATGTGCTAA 1224
Score = 773 bits (418), Expect = 0.0
Identities = 494/531 (93%), Gaps = 4/531 (1%)
Strand=Plus/Plus
Query 10 ATGCGTTGTATCGCTGGAGCATCCGTAGC-CGATTTCTCTCCGTCGCTACTGTTTCACCG 68
||||||| |||||| |||||||||||| | ||||||||||||||| |||||||||||| |
Sbjct 1 ATGCGTTATATCGCCGGAGCATCCGTA-CTCGATTTCTCTCCGTCTCTACTGTTTCACAG 59
Query 69 CCGTAATCTCGTAGCTGTTGGCCAGAGATTGCTTATGACTTCCTC-GATTTTGCGTTCTC 127
|||| |||||| ||| ||||||| |||| |||||||||||||| | ||| | |||| ||
Sbjct 60 CCGTTATCTCGGAGCAGTTGGCCGGAGACTGCTTATGACTTCCGCTAATTCT-CGTTATC 118
Query 128 ATACGAGGGAATTCGACGTTTGCGATGAAGGAATCATCTCGGTAGAGGAGTGGCGGAAAT 187
| ||||||||||||| | ||| ||||| ||| |||||||||||||||||||||||| ||
Sbjct 119 AGCCGAGGGAATTCGAAGGTTGTGATGACGGATTCATCTCGGTAGAGGAGTGGCGGAGAT 178
Query 188 GGGGTCCGGTGTCTCCATTTCCATCCGCGGTCAAACAGATTGTGGATGATTTGAAAGTTC 247
||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 179 GGGGTCCGGTGTCTCCACTTCCAGCCGCGGTCAAACAGATTGTGGAGGATCTGAAAGTTC 238
Query 248 TGGAGTGCAAATTGGATTCTCCGATAGATTTTGGTGGTAATGGTGGCAAGTTACAGGGAC 307
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 TGGAGTGTAAATTGGATTCTCCGATAGAGTTTGGTGGTAATGGTGGCAAGTTACAGGGAC 298
Query 308 CGTTTGGTGCATACGAAGATAAGAAGCATAGGGCTACATATGAAGCATTAGATGACCCGG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGTTTGGTGCATACGAAGATAAGAAGCATAGGGCTACATATGAAGCATTAGATGACCCGG 358
Query 368 AGAAAAAGTTTCGttttttttCTGCTCGACAGGTTGCTTGTCGGCTGCTTGGGAGCAGGG 427
|||||||||| || ||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 359 AGAAAAAGTTCCGGTTTTTCTCTGCTCGACAGATTGCTTGTCGGCTGCTCGGGAGCAGGG 418
Query 428 GTTATTTATGCCAGAAGTGTTGGCTTGCTATGGAGGATTGCATGTGTTCATATGTTAAGC 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 GTTATTTATGCCAGAAGTGTTGGCTTGCTATGGAGGATTGCATGTGTTCATATGTCAAGC 478
Query 488 CATGTGGTTTATGGAAACGGATACGTTTTTGGCTGTATATGCATCCTAGGG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CATGTGGTTTATGGAAACGGATACGTTTTTGGCTGTATATGCATCCTAGGG 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5