BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03700.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470341 jgi|Araly1|470341|fgenesh2_kg.1__295__AT1G03700.1          822    0.0  


> Ahg470341 jgi|Araly1|470341|fgenesh2_kg.1__295__AT1G03700.1
Length=553

 Score =  822 bits (445),  Expect = 0.0
 Identities = 489/511 (96%), Gaps = 0/511 (0%)
 Strand=Plus/Plus

Query  78   AAACTAAACTGATGGTGAAGTTAACGCAGAGATTGGGTGGGTTGGTACTGCGATTTGCGG  137
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  43   AAACTAAACTGATGGTGAAGTTAACGCAGAGATTGGGTGGGTTGGTGCTGCGATTTGCGG  102

Query  138  CATTTTGTGCCGCGTTAGGAGCGGTTATCGCAATGATCACCAGCCGTGAAAGATCTTCCT  197
            ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  103  CATTTTGTGCCGCATTAGGAGCGGTTATCACAATGATCACCAGCCGTGAAAGATCTTCCT  162

Query  198  TCTTTGTCATCTCCCTAGTGGCTAAGTATAGCGATTTGGCTGCGTTTAAGTACTTTGTGA  257
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  163  TCTTTGTCATCTCCCTAGTAGCTAAGTATAGCGATTTGGCTGCGTTTAAGTACTTCGTGA  222

Query  258  TCGCAAATGCGATTGTGACCGTTTATAGCTTTCTCGTTCTGTTTCTTCCAAAGGAGAGTT  317
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCGCAAATGCGATTGTGACTGTTTATAGCTTTCTCGTTCTGTTTCTTCCAAAGGAGAGTT  282

Query  318  TATTATGGAAGTTCGTAGTTGTGTTGGACCTGATGGTGACAATGCTGCTGACGTCAAGCT  377
            |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct  283  TATTGTGGAAGTTCGTCGTTGTGTTGGACTTGATGGTGACAATGCTGCTGACGTCAAGCT  342

Query  378  TATCAGCGGCAGTGGCAGTGGCCCAAGTGGGAAAAAGAGGAAACGCAAACGCAGGATGGT  437
            |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  343  TATCAGCGGTGGTGGCAGTGGCACAAGTGGGAAAAAGAGGAAACGCAAACGCAGGATGGT  402

Query  438  TGCCAATATGCGGTCAAGTTCCGAGATTTTGCGATCAGATAACCGGAGCTCTAATCGCCG  497
            ||||||| ||||| ||||| || |||||||| |||||||||||||||||| |||||||||
Sbjct  403  TGCCAATTTGCGGCCAAGTACCAAGATTTTGTGATCAGATAACCGGAGCTTTAATCGCCG  462

Query  498  GTTTAGTTGCATTGGTTCTCTACGTTTTCTTGCTCATCTTCTCTATCCACCATGTTGTTG  557
            ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct  463  GTTTAGTTGCATTGGTTCTCTACATTTTTTTGCTCATCTTCTCTATCCACCATGTTGTCG  522

Query  558  ATCCTTTTCTTCTTCGAAAATCATGAATCAA  588
            |||||||||||||||||||||| ||||||||
Sbjct  523  ATCCTTTTCTTCTTCGAAAATCGTGAATCAA  553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5