BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03720.1
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311464 jgi|Araly1|311464|fgenesh1_pm.C_scaffold_1000244 736 0.0
> Ahg311464 jgi|Araly1|311464|fgenesh1_pm.C_scaffold_1000244
Length=759
Score = 736 bits (398), Expect = 0.0
Identities = 668/790 (85%), Gaps = 51/790 (6%)
Strand=Plus/Plus
Query 32 ATGGGGAAAAACGAGCCATCCATTGGTGGCAAACCTATAAGGCGCCAAAA-GTACCTAAT 90
|||||||||| |||| || ||| ||||||||||| |||| |||||||| || ||||||
Sbjct 1 ATGGGGAAAAGCGAGTCAAGCATAGGTGGCAAACC--TAAGACGCCAAAAGGT-CCTAAT 57
Query 91 GAGATTAAGCGTGAAGCCGCAACTGCTAAGAAGAAAGGTCCAACTATCACACCGGTGACT 150
||| |||||| ||||||||| |||||| ||||||||| |||| ||||||||| ||||||
Sbjct 58 GAGCTTAAGCTTGAAGCCGCGGCTGCTAGGAAGAAAGGCCCAAATATCACACCAGTGACT 117
Query 151 CAAACTGATGACAATGGGGTTAGATCAAAACTATGTTACTTAAATTGCAATTCATATAAG 210
|||| | |||| |||||||||||||||||| |||||||||||||||| | ||||
Sbjct 118 CAAA--G-TGACGATGGGGTTAGATCAAAACCATGTTACTTAAATTGC-A---ATAT--- 167
Query 211 ATCGAGATATGTTGGGCCATCGCATTGACACGTCTTCTGCAAG-TCATTTACAATATAAC 269
| ||||||||||||||||||||||||||||||||||| || | | |||||||| |||||
Sbjct 168 A--GAGATATGTTGGGCCATCGCATTGACACGTCTTCTCCAGGCT-ATTTACAACATAAC 224
Query 270 TCAAGAGTAC-ATAGCTGGCCGCCTAAGATTCGATCATGATGACCTCGTCGTGCATTTGA 328
|| ||| || ||| || |||| ||| ||| ||||||||||||||||||||||||||
Sbjct 225 TCGAGA-TAATATAACTAACCGCAAAAGCTTCCTTCATGATGACCTCGTCGTGCATTTGA 283
Query 329 AGATGaaaaaaaCTCGAGGCAAACGACCGGGGTCGATGAAACTTAAGAACCTTAAAGATG 388
||| |||||||| || |||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 284 AGACGAAAAAAAATCCAGGCAAACGACCGGCGTCGTTGAAACTTCAGAACCTTAAAGATG 343
Query 389 CTATTAATCACATAGCAGTTAAGGGGTTGCTaaaaa--aaaGAGAATCGA-AGT--CGAA 443
||||||| || ||||||||||| || ||||| |||| |||| || || ||| | ||
Sbjct 344 CTATTAAACATATAGCAGTTAATGGATTGCTTAAAATTAAAGC-AA-CGGGAGTTACAAA 401
Query 444 GGCTGGGAGCGATATTGGACATCATACCAAGTGGAACTTTTCCATGGAGAAATGTCCTTC 503
|||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 402 GGCTGGGAGCGAGATTGGATATCATGGCAAGTGGAACTTTTCAATGGAGAAATGTCCTTC 461
Query 504 AAAGGATTTCATCAAGTCCAAAGTTGATATCTCTCCGGTTGCCATAGCGTTTGATATAAC 563
| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |
Sbjct 462 AGTGGATTTCATCAAGTCCAAAGTTGATATCTCTCCAGTTGTCATATCGTTTGATATAGC 521
Query 564 TCAC-AATTTCCAGTTCATTGGCAATGTTAGTAAGAAGTCAAATGGATTGAGTATCTACA 622
| || |||| ||| |||||||||||||||| ||| || | | |||||
Sbjct 522 TGACGAATT-CCATTTCATTGGCAATGTTA--AAG--GT-A--T-----------CTACA 562
Query 623 ATGTAAGCGGCGTAGACATGGAAGATGGCGATGCAG-GGGGACACGTAGTTCTCATTGTC 681
| |||||||||||||| |||||||||||||| | || |||| |||| |||||||||||||
Sbjct 563 AGGTAAGCGGCGTAGATATGGAAGATGGCGAAGTAGAGGGG-CACGCAGTTCTCATTGTC 621
Query 682 GGCTATGGCTACACCAAAGAAAATAAACTATTCTTCTTGATTCAGAATAGTTGGGGAGAG 741
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 622 GGCTATGGCTACACCAAAGACAATCGACTATTCTTTTTGATTCAGAATAGTTGGGGAGAA 681
Query 742 GATTGGGGCGTGAAAGGTTTTGGGCGGATCTTCATAGATGACG-AGTCCAAGACCACACT 800
|||||||| |||||||||||||| || ||||||||||||||| | |||| |||||||||
Sbjct 682 GATTGGGGTGTGAAAGGTTTTGGACGAATCTTCATAGATGACATA-TCCACGACCACACT 740
Query 801 TGTTTATCCA 810
||||||||||
Sbjct 741 TGTTTATCCA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5