BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03730.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470345 jgi|Araly1|470345|fgenesh2_kg.1__299__AT1G03730.1 1439 0.0
> Ahg470345 jgi|Araly1|470345|fgenesh2_kg.1__299__AT1G03730.1
Length=1010
Score = 1439 bits (779), Expect = 0.0
Identities = 962/1042 (92%), Gaps = 46/1042 (4%)
Strand=Plus/Plus
Query 29 AGTTCACGCAGTTTCCATGTAT-ATTCATTTGTTCCTAATTTCCATGTCTGGTCTCTTTT 87
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTCACGCAGTTTCCATGTATAATTCATTTGTTCCTAATTTCCATGTCTGGTCTCTTTT 60
Query 88 GGGGGAAATCAATAAATAAAACGAAACTTAAGCGCGTG-TACTCCACTACAAGCCTCTAA 146
|| |||||||||||||||||||| | ||||||||||| || ||||||||||||||| ||
Sbjct 61 -GGAGAAATCAATAAATAAAACGACATTTAAGCGCGTGTTA-TCCACTACAAGCCTCAAA 118
Query 147 ACCAACGAGTG-ATTAACACGCGCTTTAACATGAGAGTGGGACTCACGTGAACTAATCTA 205
|| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 ACTAACGAGTGCA-CAACACGCGCTTTTACATGAGAGTGGGACTCACGTGAACTAATCTA 177
Query 206 TTTTCCCCAAATCTGAAGACTTTCACttttttttttGTGctctctctcttcttcttcttc 265
||||||||||||||||||||||| | |||| ||| | | | | | || | | || ||
Sbjct 178 -TTTCCCCAAATCTGAAGACTTTC-C--TTTTGTTT-T--T-T-T-T-TT-TGC-TC-TC 223
Query 266 ttcttcttcttcttctagttcttcAGCACAAATCTCAAATCACGGAGATTTCAATTTCCA 325
||||||||||||||| || |||| | |||||| ||| |||||||||||||||||||||
Sbjct 224 TTCTTCTTCTTCTTC-AG--CTTC-GGACAAATTTCATATCACGGAGATTTCAATTTCCC 279
Query 326 ACACAAAGAAAGAAAA-AATCCCTCAATAAAAAATCTCAATCAGATCGCCGATGATGGAT 384
|||| |||||| |||| || |||||||| |||||||||||||||||| | ||||||||||
Sbjct 280 ACAC-AAGAAA-AAAATAA-CCCTCAATCAAAAATCTCAATCAGATCTCTGATGATGGAT 336
Query 385 CCAACAGGATCGCCAAGAACATCGAATGG-----C----TCTCCTCCAAGATCGTACCTT 435
||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 337 CCAACAGGATCACCAAGAACATCGAATGGCTCTTCTTTATCTCCTCCAAGATCGTACCTT 396
Query 436 ATCTTTATGCGAATCATGAGCAAGAGACGGACATGGGTTTGTCTCTTTGTAGCTGTCTAC 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 ATCTTTATGCGAATCATGAGCAAGAGACGGACATGGGTTTGTCTCTTTGTAGCTGTCTAC 456
Query 496 GCGATTCTCCTGGCTTCCTCATGGAACTTTCTCACATCTGTGCTTAGCTGGTACAAGCTC 555
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 457 GCGATTCTCTTGGCTTCCTCATGGAACTTTCTCACATCTGTACTCAGCTGGTACAAGCTC 516
Query 556 CAGTACACGTCATCGCCGTCTCCGTCAAGATTACCGGCGGTTTACGCGTCTGTGGTGTTA 615
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 517 CAGTACACGTCATCGCCGTCTCCGTCGAGATTACCGGCGGTTTACGCGTCTGTGGTGTTA 576
Query 616 GGAGCTGTGTTTGGAGCCATGTCGATGGTTGCGGCGGCTGCGGTTGCGGTTCCGGCGGTT 675
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 577 GGAGCTGTGTTTGGAGCCATGTCGATGGTTGCGGCGGCTGCGGTTGCGGTCCCGGCGGTT 636
Query 676 ATGGTGATCTGGATATCGGTGGTTGTGTTGCTTGCGTTTTTTGGGAAATCGAGAAGGGTA 735
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 ATGGTGATTTGGATATCGGTGGTTGTGTTGCTTGCGTTTTTTGGGAAATCGAGAAGGGTA 696
Query 736 TTGGTTGTTGAAGCTCGTAAGATTACAAGAGAAGTGTTTGGATTTGTGTTTAAGGTTCTT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TTGGTTGTTGAAGCTCGTAAGATTACAAGAGAAGTGTTTGGATTTGTGTTTAAGGTTCTT 756
Query 796 TTGAAAGAAGGCAATGCTGTTGCTGCGGTTTGTGCTGTTTTGGGTTATTTCATTCTTATT 855
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 757 TTGAAAGAAGGCAATGCTGTTGCTGCGGTTTGTGCTGTTTTGGGCTATTTCATTCTTATT 816
Query 856 AGAAAGgattttgattcgatttagggtttttgattttgggaaattttcttctcttttttt 915
||||||||||||||||||||||||||||||||||||||||| |||| ||||| | || ||
Sbjct 817 AGAAAGGATTTTGATTCGATTTAGGGTTTTTGATTTTGGGATATTTCCTTCT-TCTTCTT 875
Query 916 attattattggattaggtgggtttttctttcTTTCCTGGAAATTTGACTATTATATTGAA 975
|| || |||||||| || ||||||||||||||| ||||||||||| || ||||||||
Sbjct 876 -TT-TT---GGATTAGG-GGCTTTTTCTTTCTTTCC-GGAAATTTGACGATCATATTGAA 928
Query 976 GAAACTCTTGTCTT-TTGCTTCTTGTTTAACTTGTTGCTAATGTAGCAATGTATATGTAC 1034
||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 929 GAAACTCTTTTCTTGTTGCTTCTTGTTTAACTTATTGCTAATGTAGCAATGTATATGTAC 988
Query 1035 ATTTTATAAACGGAGATGTTCT 1056
| ||||||||||||||||||||
Sbjct 989 AATTTATAAACGGAGATGTTCT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5