BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03743.1

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919043 jgi|Araly1|919043|scaffold_100324.1                        145    5e-35


> Ahg919043 jgi|Araly1|919043|scaffold_100324.1
Length=277

 Score =  145 bits (78),  Expect = 5e-35
 Identities = 81/82 (99%), Gaps = 1/82 (1%)
 Strand=Plus/Minus

Query  1   AGAAATGATGAGAAATCAGAT-AAATCTTAGGACACCTTCTGACACAGATTCTGTGTATG  59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  90  AGAAATGATGAGAAATCAGATAAAATCTTAGGACACCTTCTGACACAGATTCTGTGTATG  31

Query  60  AGAATGACATCATATTCTGATC  81
           ||||||||||||||||||||||
Sbjct  30  AGAATGACATCATATTCTGATC  9



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2255035047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5