BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03760.1
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470349 jgi|Araly1|470349|fgenesh2_kg.1__303__AT1G03760.1 1668 0.0
> Ahg470349 jgi|Araly1|470349|fgenesh2_kg.1__303__AT1G03760.1
Length=1386
Score = 1668 bits (903), Expect = 0.0
Identities = 1248/1404 (89%), Gaps = 66/1404 (5%)
Strand=Plus/Plus
Query 26 GTCGTCGTCGTTGTGCTTAAACCCTTACCGGAATGGAGCCGCCGGCGAAAGGAACGGTGA 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2 GTCGTCGTCGTTGTGCTTAAACCCTTACCGGAATGGAGCCGCCGGCGAAAGGAACAGTGA 61
Query 86 CGCCGTTA--G--GAT-TT-TCAGAGGAGGATGTTCGAAAAGCAGCAAGTTACATGGAGG 139
|||||||| | | | || ||||||||||| | || ||||||||||| ||| ||||||
Sbjct 62 CGCCGTTAGCGTCGTTGTTCTCAGAGGAGGAGGCACGGAAAGCAGCAAGCTACGTGGAGG 121
Query 140 AGAAAATCGGAGAGAAGCGAGTAGAGATGAATCGTCTTCAACAGTACGTCGACGAAAACG 199
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 122 AGAAAATCGGAGAGAAGCGAGTAGAGATGAATCGTCTTCAACAGTTCGTCGATGAAAACG 181
Query 200 ATAATCTCATCAATCTCGTCAAGAAGCTTCCCGATCAGCTTCATCACAACGTTATGGTTC 259
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 182 ACAATCTCATCAATCTCGTCAAGAAGCTTCCCGATCAGTTTCATCACAACGTTATGGTTC 241
Query 260 CATTCGGTAAAATGGCTTTTTTCCCAGGTCGATTGATTCACACCAACGAGTGTTTGGTGT 319
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 242 CATTCGGTAAAATGGCTTTTTTCCCAGGTCGATTGATCCATACCAACGAGTGTTTGGTGT 301
Query 320 TGTTGGGAGAGAATTACTATACTGATAGATCATCGAAACAAACTGTTGATTTCCTGAAGA 379
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 302 TGTTGGGGGAGAATTACTATACTGATAGATCATCGAAACAAACTGTTGATTTCTTGAAGA 361
Query 380 GAAGAGACAAGACTTTACAGTCTCAAATTCATTCTCTTAAAGCTGAGATTGAAGATCTTC 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 GAAGAGACAAGACTTTACAGTCTCAAATTCATTCTCTTAAAGCTGAGATTGAAGATTTTC 421
Query 440 AAACGGAGGCTTCATTCTTCACTACAACTGCTTCTGAAGTAGCGGATGGACTTGTTGAGA 499
|||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 422 AAACGGAGGCTTCATTCTTCACCACAACTGCTTCTGAAGCAGCGGAAGGACTTGTTGAGA 481
Query 500 TAAGAGAAGAGTATGTAGAAGAAGATTCTTCTGCACCTGTTGTGATACATTCAAGTGAAA 559
|||||||||||||||||||||||||||| |||||| |||| || | || ||||||||||
Sbjct 482 TAAGAGAAGAGTATGTAGAAGAAGATTCATCTGCAACTGTGGT--T-CAGTCAAGTGAAA 538
Query 560 AAGAGCCTTGTAATCTTTCTGAAGGAGAGACTGAAGAAGGTGAACTTGAAGACGATGACT 619
||||||||| |||| |||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 539 AAGAGCCTTCTAATATTTCTGGAGGAGAGGCTGAAGAAG---AACTTGAAGACGATGACT 595
Query 620 TTGCAAGAATCATGGCCAGGTTGAATGAACTTGAAATAGAGGAAGAACTGGAGGGTGAAG 679
|||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 596 TTGCAAGAATCATGTCCAGGTTGAATGAACTTGAAATGGAAGAAGAACAGGAGGGTGAAG 655
Query 680 ATGGGGAT-AGTAGAGGTGAAGATCCTGATTCTTCAGTAGAAAGTGTGGAACAGATCCAG 738
|||||| | |||||||||||| | | ||||| || |||||| | |||| ||| ||||
Sbjct 656 ATGGGGGCGA-TAGAGGTGAAGAACATTATTCTCCAATAGAAATTTTGGAGGAGAGCCAG 714
Query 739 CATGATTTGGTGAAAGGAAGTAGAGGTGAGACAGACCGTGGTAGGGTTGAATACGGGAAA 798
||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 715 CATGATTTGGTGAAAGGAATTAGAGGTGAGACAGACCGTGGTAGGATTGAATATGGGAAA 774
Query 799 CAAGAAACTACCATATCTGTTCCTAACAAAGCTTC-CGGTCATAGCTCTTC-A--C-CGA 853
|| ||||||| |||||||||||||| ||| |||| || ||||||||||| | | |||
Sbjct 775 CAGGAAACTATCATATCTGTTCCTATGAAAACTTCACGC-CATAGCTCTTCCATTCGCGA 833
Query 854 ---G-GG-TCTCAGAGCCAAGGGTCGAAGCCAAAATTATTCAAGTGTTACCAGAGACACA 908
| || | ||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 834 ACCGAGGGTTTCAGAGCCAAGAGTCAAAGCCAAAGTTATTCAAGTGTTACCAGAGACACA 893
Query 909 TCCACACAAAGATCTAGATGATCCGCTGAA-TCGTATCCGACCAATGGCACAATATCTTT 967
||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||
Sbjct 894 CCCACACAAAGATCTAGATGATCCGCTGAACT-GTATTGGACCAATGTCACAATATCTCC 952
Query 968 CCAAAGAAGGTCAATCACGTGGCGGAACC-CCTCAGCAAAACGCTGAAACATGGAAAGAC 1026
|||||| || |||||| | | ||||||| || ||||||||||||| |||||||| ||||
Sbjct 953 CCAAAGGAGATCAATCTCATAGCGGAACTGCC-CAGCAAAACGCTGGAACATGGAGAGAC 1011
Query 1027 TTTC-G---A--------A---C----G-AATG-CAAAAACCAATGTTTTAGGACCACAA 1065
|||| | | | | | || | ||||||||||||||||||||||||||
Sbjct 1012 TTTCAGGCGACCGCTGCTATTTCCACAGCAAAGGCAAAAACCAATGTTTTAGGACCACAA 1071
Query 1066 AAGATTGAGCCACAGAAGCCAGAGCCCGAGTTTGATTCTACCAAGGCTTTTACTGGATCA 1125
|| |||||| | | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AATATTGAG--A-A-AC-CC-GAGCCCGAGTTTGATTCTACCAAGGCTTTTACTGGATCA 1125
Query 1126 ATCGTAGAGCATGCCCATATTCTAGAGACCAGCGCACACAGCCAAACGCAGTCTTCTACG 1185
|||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||
Sbjct 1126 ATCGTAGAGCATGCCCATATTCAAGAGACCAGCACACACAGCCATACGCAGTCTTCTGCG 1185
Query 1186 TCTCAACCGTCTAAACCAGTGTCGAGATTCAGGGCGAAGAGAAGGTAGCCAGTCAGCTCT 1245
||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||
Sbjct 1186 TCTCAACCGTCTAAACCAGTGTCAAGATTCAAGGCGCAGAGAAGGTAGCCAGTCAGTTCA 1245
Query 1246 GTGTACAATTTTTTGTTGAGTTGCCTTTATGATATGTAAGAA----G---TAAGAACACA 1298
||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 1246 GTGTACAATTTTTTGTTGAGTTGCCTTTAAGATATGTAAGAACTAAGAAGTAAGAACACA 1305
Query 1299 TGCAAATGTGCGCAACCTTGTAAGCTTACTCTATATACAGTTAATTAACAAAATCTACAT 1358
|||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1306 TGCAAATGTGTGCATC-TTGTAAGCTTACT--ATATACAGTTAATTAACAAAATCTAAAT 1362
Query 1359 aaaaaaaTCTGACATTGTTACTTG 1382
|| |||||||| |||||||||||
Sbjct 1363 CAAGAAATCTGATATTGTTACTTG 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5