BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03770.2
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470350 jgi|Araly1|470350|fgenesh2_kg.1__304__AT1G03770.1 2231 0.0
Ahg915796 jgi|Araly1|915796|Al_scaffold_0008_547 547 8e-155
> Ahg470350 jgi|Araly1|470350|fgenesh2_kg.1__304__AT1G03770.1
Length=1571
Score = 2231 bits (1208), Expect = 0.0
Identities = 1473/1594 (92%), Gaps = 45/1594 (3%)
Strand=Plus/Plus
Query 24 gtcctcctttgttctcctttctctctttccATCGGCACCGAACCGAAACAACAAAGAACG 83
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1 GTCCTCCTTTGTTCTCC-TTCTCTCTTTCCATCGGCACCGAAACGAAACAACAAAGGACG 59
Query 84 AGGAAATACAA-ATAAGCCCACAAGAGAGAGACGTAGATGGAGAGATAAAGGTCAAAGCT 142
||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 60 AGGAAATACAAGA-AAGCCCACAAGAGAGATACGTAGAGGGAGAGATAAAGGTCAAAGCT 118
Query 143 TTATTCTTTTTCCTCTCTCTTCCTAGAAGCAGAGATCACTGTTATCAAACAATCAACAAT 202
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 TTATTCTTGTTCCTCTCTCTTCCTAGAAGCAAAGATCACTGTTATCAAACAATCAACAAT 178
Query 203 GCCTTCCTTGAAGAGCTTCTCCGCCGCCGAGGAAGAAGATGACCAACTGGGTCGGAACTC 262
|||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 179 GCCTTCTTTGAAGAACTTCTCCGCCGCCGAGGAAGAGGATGACCAACTGGGTCTGAACTC 238
Query 263 AGAAGCTGAAAGATTCAATCCTGAAGCTGTGGAGAAAGAAGAAGATCCAGACAAAATGGA 322
|||||||| ||||||||||| |||| |||||||||||||||||||| || ||||||||
Sbjct 239 AGAAGCTGCCAGATTCAATCCCGAAGATGTGGAGAAAGAAGAAGATCTGGATAAAATGGA 298
Query 323 TGAGAAGGACGAAAGTGGAGATGAGGAAGACGACGTGAAACGTGACCAAGTAGAAGCAGA 382
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGAGAAGGACGAAAGTGGTGATGAGGAAGACGACGTGAAACGTGACCAAGTAGAAGCAGA 358
Query 383 GGATGAGGAAGCGTTAGGAGAAGAAGAAGTTTCAGATTCTAAGGAAAGAAGTCAATCTTC 442
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 359 GGATGAGGAAGCGTTAGGAGAAGAAG-A-----AGATTCTAAGGAAAGAAGTCAAGCTTC 412
Query 443 TTCAGCAGGAGAGTTATCAGAATCAGAATATATGGT-TGTTGATCTAGCGGATATCTGTA 501
||||| ||||||| |||||||||||||||| | || ||||||||||||||||||| |||
Sbjct 413 TTCAGAAGGAGAGCAATCAGAATCAGAATAT-TTGTATGTTGATCTAGCGGATATCCGTA 471
Query 502 AGGACGTGCAATGCTCGATATGTTTAGGGATTATAAGGAAAACAAGGACTGTGATGGAAT 561
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GGGACGTGCAATGCTCCATATGTTTAGGGATTATAAGGAAAACAAGGACTGTGATGGAAT 531
Query 562 GTCTCCACCGGTTTTGCCGAGAGTGCATTGATAAGTCAATGAGATTGGGGAACAATGAGT 621
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTCTCCACCGGTTTTGCAGAGAGTGCATTGATAAGTCAATGAGATTGGGGAACAATGAGT 591
Query 622 GTCCTACTTGCAGAAAACATTGTGCAAGCCGACGTTCTTTAAGAGACGACCCAAACTTTG 681
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GTCCTACTTGCAGGAAACATTGTGCAAGCCGACGTTCTTTAAGAGACGACCCAAACTTTG 651
Query 682 ATGCCTTAATAGCAGCTTTATTCAAAAATATTGATAAATTTGAGGAGGAGGAATTGAATT 741
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 652 ATGCCTTAATAGCAACTTTATTCGAAAATATTGATCAATTTGAGGAGGAGGAAATGGCTT 711
Query 742 TTCGTCAAGATGATGAAGCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAGTATCGC 801
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTCGTCAAGATGACGAGGCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAGTATCGC 771
Query 802 AACGACAATCTAAGGCCCTTGTAAAAAGAAAGTCTGTTGGTAAAGGCACAGCGATCTTAT 861
||||||||||| ||||||||| ||||||||||||| ||||||||| | ||||| ||||||
Sbjct 772 AACGACAATCTGAGGCCCTTGCAAAAAGAAAGTCTTTTGGTAAAGACGCAGCGGTCTTAT 831
Query 862 CGAGATCACGACGTAGTGGTGGCGGCTCCAGAAGAAGAAGGAACTGCAGAAACATTGAAC 921
| |||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 832 CAAGATCACGTCGTAGTGGTAGTGGCTCCAGAAGAAGAAGGAACTGCAGAAACATGGAAC 891
Query 922 AGGATACATCAGAAGCCAATGATGATGATGATCAAAACAAAAGAGGCAAAGATTCTTCTT 981
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGGATACATCAGAAGCCCATGATGATGATGATCAAAACAAAAGAGGCAAAGATTCTTCTT 951
Query 982 CAGATGAGCCTTGTG---A---------GAGGCAACGAAAAAAGCGTTC-AGCAACTCAG 1028
||||||||||||||| | |||| ||||||||||||| || | ||||||||
Sbjct 952 CAGATGAGCCTTGTGCCGAAATCCTTCTGAGGAAACGAAAAAAGCGCTCTA-CAACTCAG 1010
Query 1029 CCTTCTTCTTCAAATGCAAACAACAACGATAACTGCGCAGGTAATGGCACAGAGCAGACG 1088
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1011 CCTTCTTCTTCAAATGCAAACAACAACGATAACTGTGCAGGTAATGGCACAGAGCAGACG 1070
Query 1089 CATCAGAGGGACAGCAGAGTAATATCACCTGTGCTTGTGTGGAACTCGGAACTAATTGCA 1148
||||||||||||||||||| |||||||||||||||| |||||||||| ||| || |||||
Sbjct 1071 CATCAGAGGGACAGCAGAGGAATATCACCTGTGCTTATGTGGAACTCAGAAATACTTGCA 1130
Query 1149 TGGGGAAGAGGCGGTACAAGGAGTAACACAAGGCAAGGAAATAATAACCAAGGAGCTATT 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGGGGAAGAGGCGGTACAAGGAGTAACACAAGGCAAGGAAATAATAACCAAGGAGCTATT 1190
Query 1209 AGTAAGAGAAATGCTCGCTTGAAAAGACTTGTGGAATATCTCGGGAGCTTAGAGGGTAAT 1268
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1191 AGTAAGAGGAATGCTCGCTTGAATAGACTTGTGGAATATCTCGGGAGCTTAGAGGGTAAT 1250
Query 1269 AGTGTCGAGTTGGATATTCATCTTAAGCTTGTCTCGCTGGATACAGAAGGTTTACTAAAC 1328
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1251 AGTGTCGAGTTGGATATTCATCTTAAGCTTATCTCGCTGGATACAGAAGGTTTACTAAAC 1310
Query 1329 TTACATGAGCCATATCTTTGTTTCCGGCCCACTTTGCTAGTTAAACAACTCCGCGAAGTG 1388
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 1311 TTACTTGAGCCATATCTTTGTTGCCGGCCCACTTTGCTAGTAAAACAACTCCGCGAA-T- 1368
Query 1389 AGTTCTCTCCCTCTGTATGTGGCACGCCATTTAAAATTGAAGGCTGAAGAGGTTGAATTG 1448
| | || | | ||||||| | |||||||||||||||||||||||||||
Sbjct 1369 A-T-----------GT--G-G-CACGCCAGATGAAATTGAAGGCTGAAGAGGTTGAATTG 1412
Query 1449 TTGGTGTCTAAAGATGGGGATACGGTCATTGGGAATAAGACCTCAACAGAGAAGATGCAA 1508
|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1413 TTTGTGTCTAAAGATGGGGATAGGGTAATTGGGAATAAGACCTCAACAGAGAAGATGCAA 1472
Query 1509 AGCCTGCAAGATGATGAGACCGTGGCAAAGCTAAAAGTTGATTGCATTTCGAGCAATGGA 1568
|| |||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1473 AGTCTGCAAGATGATGAAACCTTGTCAAAGCTAAAAGTTGATTGCATTTCGAGCCATGGA 1532
Query 1569 TATATGATTGTAGTGTACCGGAGA-AAGCAAATC 1601
||||||||||||| || ||| ||| |||| ||||
Sbjct 1533 TATATGATTGTAGCGTTCCG-AGACAAGCGAATC 1565
> Ahg915796 jgi|Araly1|915796|Al_scaffold_0008_547
Length=1551
Score = 547 bits (296), Expect = 8e-155
Identities = 780/997 (78%), Gaps = 100/997 (10%)
Strand=Plus/Plus
Query 463 AATCAGAATATATGGTTGTTGATCTAGCGGATATCTGTAAGGACGTGCAATGCT-CGATA 521
||||||||| ||||| ||||||||| ||| ||| |||| |||||||| || | | |||
Sbjct 341 AATCAGAATTTATGGAAATTGATCTAGGGGAAATCCGTAAAGACGTGCAGTG-TCCAATA 399
Query 522 TGTTTAGGGATTATAAGGAAAACAAGGACTGTGATGGAATGTCTCCACCGGTTTTGCCGA 581
|| |||| ||||||| |||||||||||||||||||||||| || ||| |||| ||| |
Sbjct 400 TGCCTAGGAATTATAAAGAAAACAAGGACTGTGATGGAATGCCTTCACAGGTTCTGCAGG 459
Query 582 GAGTGCATTGATAAGTCAATGAGATTGGGGAACAATGAGTGTCCTACTTGCAGAAAACAT 641
|| || ||||||||||| |||||||||||||||||||| |||||| ||||||| || |||
Sbjct 460 GAATGTATTGATAAGTCCATGAGATTGGGGAACAATGAATGTCCTGCTTGCAGGAAGCAT 519
Query 642 TGTGCAAGCCGACGTTCTTTAAGAGACGACCCAAACTTTGATGC-CTTAATAGCAGCTTT 700
||||||||||| |||||| |||||||||||||||| |||||||| ||| || ||||||||
Sbjct 520 TGTGCAAGCCGGCGTTCTCTAAGAGACGACCCAAAGTTTGATGCTCTT-ATTGCAGCTTT 578
Query 701 ATTCAAAAATATTGATAAATT-TGAGGAGGAGGAATTGAATTTTCGTC-AAGATG--ATG 756
||||| ||||||| || | || |||||| |||||| || ||||| | |||||| |||
Sbjct 579 ATTCACAAATATTTAT-AGTTATGAGGAAGAGGAACTGGCTTTTC-ACGAAGATGAAATG 636
Query 757 AAGCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAGTATCGCAACGACAATCTAAGG 816
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 637 --GCTCGTAATAAGCAGATTCAAGCATCTATAGCTCAAATATCGCAACGACAATCTGAGG 694
Query 817 CCCTTGTAAAAAGAA-AGTCTGTTGG-TAAAG-GCACAGC-GATCTTA-TCGAGATCAC- 870
| ||||| |||||| | ||| |||| ||||| | |||| | ||||| | ||||||||
Sbjct 695 CTCTTGTGAAAAGACGA-TCT-TTGGGTAAAGAGG-CAGCCG-TCTTAAT-GAGATCACC 749
Query 871 GACGTAGTGGTGGCGGCTCCAGAAGAAGAAGGAACTGCAGAAACATTGAACAGGATA-C- 928
| |||| || | | |||||||||| ||| |||||||||||||||| ||||| | | |
Sbjct 750 G-CGTATTGCTAGTAGCTCCAGAAGGAGACGGAACTGCAGAAACATGGAACAACAAAACG 808
Query 929 -ATCAGAAGCCAATGATGATGAT------GATCA-AA-A-CAA-A-AG-AGG---CAAAG 972
|||||||||| |||| |||||| ||| | || | ||| | || ||| |||||
Sbjct 809 CATCAGAAGCCCATGACGATGATAATAATGATGATAATAACAACAGAGGAGGAGACAAAG 868
Query 973 ATTCTTCTTCAGATGAGCCTTGTG-AGA-G---G-CA-ACGAAA---A-AAG-CG-T-T- 1017
|||| ||||||||||||| | || ||| | | || | |||| | || || | |
Sbjct 869 ATTCGTCTTCAGATGAGCGTGGTACAGAAGTCCGGCAGAAGAAACGTAGAAAACGGTCTA 928
Query 1018 CA-G-C----AACTCAGC-C--TTCTTCTTCAAATGCAAACAACAACGAT---AACTGCG 1065
|| | | ||| || | | ||||||||| ||||||||| ||| || ||||| |
Sbjct 929 CAAGTCGTTCAACACAACACCCTTCTTCTTCTGGTGCAAACAAAAACAATGGTAACTGTG 988
Query 1066 CAGGTAATGGCACAGAGCAGACGCATCAGAGGGACAGCAGAGTAATATCACCTGTGCTTG 1125
||| ||||| |||||| || | || |||| |||||| || |||||| || | |||||
Sbjct 989 CAGATAATGACACAGA--AGT-GTAT-AGAG--ACAGCAAAGGAATATCTCCCGGGCTTG 1042
Query 1126 TGTGGAACTCG-GA-ACTAATTGCATGGGGAAGAGGCGGTACAAGGAGTAACACAAGGCA 1183
||||||| || || | || | || |||||||||||||| ||||||||||||||||| ||
Sbjct 1043 TGTGGAA-TCAAGAGA-TACTGGCTTGGGGAAGAGGCGGGACAAGGAGTAACACAAGACA 1100
Query 1184 AGGAAATAATAAC--CAAGGAGCTATTAGTAAGAG----A--AATGCTCGCT-TGAA-AA 1233
|| |||| || | || |||| || ||||||||| | |||||||| | |||| ||
Sbjct 1101 TGGGAATAGTA-CTTCA-GGAGGTAGTAGTAAGAGTGTGAGGAATGCTCG-TGTGAACAA 1157
Query 1234 GACTTGTGGAATATCT-CGG-G-AGCTTAGAGGG-TAATAGTGTCGAGTTGGATATTCAT 1289
| ||||| ||||| || || | ||| |||| || | ||| || ||||| |||||||||
Sbjct 1158 G-CTTGTTGAATACCTACGTAGCAGCATAGATGGATC-TAGCGTTGAGTTAGATATTCAT 1215
Query 1290 CTTAAGCTTGTCTCGCTGGATACAGAAGGTTTACTAAACTTAC-ATGAGCCATATCTTTG 1348
| ||||||||||||||||||||| || || ||| | |||||| | |||||||||| ||
Sbjct 1216 GTCAAGCTTGTCTCGCTGGATACAAAATGTATACCAGACTTACCAC-AGCCATATCTCTG 1274
Query 1349 TTTCCGGCCCACTTTGCTAGTTAAACAACTCCGCGAA 1385
|| ||| ||||||||||| || ||||| ||||| |||
Sbjct 1275 TTGCCGACCCACTTTGCTTGTAAAACAGCTCCGTGAA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62201370085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5