BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03780.3
Length=2539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470351 jgi|Araly1|470351|fgenesh2_kg.1__305__AT1G03780.2 3576 0.0
> Ahg470351 jgi|Araly1|470351|fgenesh2_kg.1__305__AT1G03780.2
Length=2585
Score = 3576 bits (1936), Expect = 0.0
Identities = 2277/2432 (94%), Gaps = 61/2432 (3%)
Strand=Plus/Plus
Query 19 TTCTGGTTACAGACAGATACATTCCCTCTGAG-AACCAAGAAAACAAAATAATAAT-AAA 76
||||| |||||||||||||||||| ||||||| || |||||||||||||||||||| |||
Sbjct 1 TTCTGATTACAGACAGATACATTCTCTCTGAGAAAACAAGAAAACAAAATAATAATAAAA 60
Query 77 AAACCCTAATTCCCCGCTCCACTtctctctctcacgctct-c----tctGTGATTTTAGT 131
|||||||||||||||||| | | ||||||||||||||||| | ||||||||||| ||
Sbjct 61 AAACCCTAATTCCCCGCT-C-C-TCTCTCTCTCACGCTCTCCTTGTTCTGTGATTTTGGT 117
Query 132 ATGGAAGCAACGGCGGAGGAATCAGTTAGTACTCTTGTTACGACGATGGTTGATGAGACG 191
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 118 ATGGAAGCAACGGCGGGGGAATCAATTAGTACTCTTGTTACGACGATGGTTGATGAGACG 177
Query 192 TATGAGTTCTTAGCGCCTCGATGGTTTGATTTCGTTAATGGAGAGACTGAAGATGAGTCT 251
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 TATGAGTTCTTAGCGCCCCGATGGTTTGATTTCGTTAATGGAGAGACGGAAGATGAGTCT 237
Query 252 CGCCGAGCAGAACTCTGGTTTCAATCGGCCTTAAGCTGCGCTCCTTCTCCTTCGGTTCCT 311
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CGCCGAGCAGAGCTCTGGTTTCAATCGGCCTTAAGCTGCGCTCCTTCTCCTTCGGTTCCT 297
Query 312 AGAATCAAAGCAAGGAGATCGTTCAAGGTAGAGGCCATGTGCAACTTCAATGAAG-CTGA 370
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 298 AGAATCAAAGCAAGGAGATCATTCAAGGTAGAGGCCATGTGCAACTTCAATGAAGAC-GA 356
Query 371 AGAAGAG--A-CGCTCAAGGATAAAGAGCCGTTAGAACCAGTAGTTCCAATTGTTTCTTT 427
||||||| | ||||||||||||| ||||| ||||||||||||| | ||||||||||||
Sbjct 357 AGAAGAGATACCGCTCAAGGATAATGAGCCATTAGAACCAGTAGCTGCAATTGTTTCTTC 416
Query 428 ACAATCGCAGCCTTCTCAGGCCAAGAAAGCAGAAGTTGCTCCT-TCTAAAGCAAGCACTG 486
||||||| |||||||| |||||||||||| ||||||||||||| | |||||| |||||
Sbjct 417 ACAATCGGAGCCTTCTGAGGCCAAGAAAGAAGAAGTTGCTCCTAT-TAAAGCCAGCACAA 475
Query 487 TTAAGCCGTCTCGCATCAGTTCCAAGGACGCAGAGGTCAACAACAAGACCGTAGATGCCA 546
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 TTAAGCCGTCTCGCAACAGTTCCAAGGACGCAGAGGTCAACAACAAGACCGCAGATGCCA 535
Query 547 GCGATCCGACGACTGAG-CCAATAGAAGACAAGGAGAACATTGCTCCTGCTTGCACACCC 605
| || ||||||||| | | ||||||||||||| ||||||| |||||||||||||||||
Sbjct 536 GTAATGCGACGACTG-GTCGGATAGAAGACAAGGCGAACATTCCTCCTGCTTGCACACCC 594
Query 606 AAACCACCAATGCAGTTTTCTCTAGG-GGCAAAGTCGGTGGATCTTAAGAAGCAGCAAAC 664
|||||||||||||||||||||||||| || |||||||||||| | |||||||||||||||
Sbjct 595 AAACCACCAATGCAGTTTTCTCTAGGAGG-AAAGTCGGTGGACCCTAAGAAGCAGCAAAC 653
Query 665 TGCTAGAAAGATAGCTAGTCTGCTGAAGAA---TCCATCTACACTAAGGCCT-AAAA--A 718
|||||||| ||||||||||||||||||||| ||| ||| |||| |||||| |||| |
Sbjct 654 TGCTAGAAGGATAGCTAGTCTGCTGAAGAATCCTCCGTCTGCACTTAGGCCTAAAAACCA 713
Query 719 --C-CA---GTCTCAAGCCAAAGGCAGTCATCAGAAAAGTGTGAAAGGGGAAACGAATCT 772
| || ||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 714 GTCACAGTTGTCTCAAGCCAAAGGCAGTCATCAGAAAAGTGTGAAAAGGGAAACGAGTGT 773
Query 773 TAACAACATAGCTAGCACTACCAATCTGATTCAAGAAAATCAAGCCATCAAAAGGCAAAA 832
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 774 TAACAATATAGCTAGCACTACCAATCTGATTCAAGAAAATCAAGCCATAAAAAGGCAAAA 833
Query 833 GCTAGATGATGGAAAATCAAGACAGATTCTCAATCCAAAACCAGCAACTCTGCTCCACAA 892
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 834 GCTAGATGATGGAAAATCAAGACAGATTCTCAATCCAAAACCAACAACTCTGCTCCACAA 893
Query 893 GACAAGAA-ATGGTCTTGTTAACACTGGTTTCAACTTATGCCCTTCAGTCACTAAGCACA 951
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 894 GACAA-AACATGGTCTTGTTAACACTGGTTTCAACGTATGCCCTTCAGTCACTAAGCACA 952
Query 952 CTCCGAAGGAAAACAGAAAGGTTTATGTTCGTGAGCAAATTGCACCTTTTGTTTCAACTG 1011
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 953 TTCCGAAGGAGAACAGAAAGGTTTATGTCCGTGAGCAAACTGCACCTTTTGTTTCAACTG 1012
Query 1012 CTGAATTGATGAAGAAGTTCCAAACAAGCACGCGAGACC--T-A-T---T--C-G----- 1056
||||||||||||||||||||||||||||||| ||||||| | | | | | |
Sbjct 1013 CTGAATTGATGAAGAAGTTCCAAACAAGCACCCGAGACCTGTCATTGCCTCACGGAAACA 1072
Query 1057 -------T-C-CAGAATCGACCTAAGCTGACACTGACAAGACCAAAGGAACCCGAATTTG 1107
| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1073 CTTCTCTTCCACAGAATCGACCTAAGCTGACACTGACAAGGCCAAAGGAACCCGAATTTG 1132
Query 1108 TGACGTCCCAACGAGCTCGTCCTTTGAGA-GTTAAGAGCAGTGCAGAACTTGAGGAAGAG 1166
|||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1133 TGACATCCCAACGAGCTCGTCCTTTGA-ATGTTAAGAGCAGTGCAGAACTTGAGGAAGAG 1191
Query 1167 ATGTTGGCAAAGATTCCCAAGTTTAAAGCTCGACCTGTGAACAAGAAGATTTTGGCAGCT 1226
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 ATTTTGGCAAAGATTCCCAAGTTTAAAGCTCGACCTGTGAACAAGAAGATCTTGGCAGCT 1251
Query 1227 CCAGCTTTGCCTGCACCTCAAAGAAGTACACCACATCTGCCAGAATTTCAGGAATTTCAT 1286
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1252 CCAGCTTTGCCTGCACCTCAAAGAAGTACACCACATCTACCAGAATTTCAGGAATTTCAT 1311
Query 1287 CTTCAAACAATGGCAAGGGCTAACCAGCATGCAGAGACATCTTCAATAGCTTCAACAGAA 1346
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1312 CTTCAAACAATGGCAAGAGCTAACCAGCATGCAGAGACGTCTTCTATAGCTTCAACGGAA 1371
Query 1347 GTGTCTAAGCAGCATAATGATCAGAAGCATCACCTTACTGAACCAAAGAGCCCTGTGCTC 1406
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1372 GTGTCTAAGCAGCATAATGATCGGAGGCCTCACCTTACTGAACCAAAGAGCCCTGTGCTC 1431
Query 1407 CAAACAATGCTAAGAGCTCGTCCTACTATAGCAAAAACTACTGCAGAACTTGAGCAAGAG 1466
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1432 CAAACAATGCTACGAGCTCGTCCTACTAAAGCAAAAACTACTGCAGAACTTGAGCAAGAG 1491
Query 1467 GAACTGGAGAAGGCACCAAAGTTCAAAGCAAAACCTTTGAACAAAAAGATATTTGAAAGT 1526
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1492 GAACTGGAGAAGGCACCAAAATTCAAAGCAAAACCTTTAAACAAAAAGATATTTGAAAGT 1551
Query 1527 AAAGGAGAAATGGGTATCTTTTGCAACACCAAGAAGCACATAACGATACCTCAAGAGTTT 1586
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1552 AAAGGAGAAATGGGCATCTTTTGCAACACCAAGAAGCACATAACCATACCCCAAGAGTTT 1611
Query 1587 CACTTTGCGACAGATGAGAGGATATCACGACCAGAATCTGTCTTAGATATATTCGACAAG 1646
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1612 CACTTTGCCACAGATGAGAGGATATCACGACCAGATTCTGTCTTAGATATATTCGACAAG 1671
Query 1647 CTCTCACTGAACTCCGAATCTTGCCATGAAAAACCTCTACCAAGGAACACTGCTCCAAAC 1706
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1672 CTCTCATTGAACTCCGAATCTTGCCATGAAAAGCCTCTACCAAGGAACACTGCTCCAAAC 1731
Query 1707 CCCTTCAATCTTAAGACAGAAGAAAGAGGCGCTGAGAAAGAGAAGAAATTTTATATGGAA 1766
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1732 CCCTTCAATCTTAAGACAGAAGAACGAGGCGCTGAGAAAGAGAAGAGATTTTATATGGAG 1791
Query 1767 CTCATGTATAAGAAATTAGGAGATGTAAAGGCAAGAGTTCCAAAGGCAAATCCATATCCT 1826
||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1792 CTCATACATAAAAAATTAGGAGATGAAAAGGCAAGAGTTCCAAAGGCAAACCCATATCCT 1851
Query 1827 TACACGACGGACTATCCAGTGGTACCACCAAAACCAGAACCTAAGCAATGCACACAACCA 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 TACACGACGGACTATCCAGTGGTACCACCAAAACCAGAACCTAAGCAATGCACACAACCA 1911
Query 1887 GAACCGTTCCAGTTAGAGAGTCTAGTAAGGCACgaagaggaaatgcgaagagaaagggaa 1946
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1912 GAACCGTTCCAGTTAGAGAGTCTAGTAAGGCACGAAGAGGAAATGCGAAGAGAATTGGAA 1971
Query 1947 gagaggaggagaatggagacagaagaagcccagaagaggCTCTTCAAAGCACAACCAGTT 2006
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GAGAGGAGGAGAGTGGAGAGAGAAGAAGCCCAGAAGAGGCTCTTCAAAGCACAACCAGTT 2031
Query 2007 ATAAAAGAGGACCCAATCCCTGTTCCAGAGAAAGTACGAATGCCCCTCACAGAAATTCAG 2066
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 AAAAAAGAGGACCCAATCCCTGTTCCAGAGAAAGTACGAATGCCCCTCACAGAAATTCAG 2091
Query 2067 GAGTTCAATCTTCATGTAGAGCATCGAGCTGTTGAACGAGCAGATTTTGATCACAAAATC 2126
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2092 GAGTTCAATCTTCATGTAGAGCATCGAGCTGTTGAGCGAGCAGATTTTGATCATAAAATT 2151
Query 2127 AAAGAGAAGGAGAACCAGTACAAAAGATACCGTGAAGAGAGTGAAGCTGCAAAAATGGTG 2186
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 AAAGAGAAGGAGAATCAATACAAAAGATACCGTGAAGAGAGTGAAGCTGCAAAAATGGTG 2211
Query 2187 GAGGAAGAGAGAGCTCTGAAGCAAATGAGAAAGACAATGGTTCCTCATGCCAGACCTGTG 2246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 GAGGAAGAGAGAGCTCTGAAGCAAATGAGAAAGACAATGGTTCCTCATGCCAGACCTGTG 2271
Query 2247 CCTAACTTCAACAAACCCTTCTTACCTCAGAAGTCCAACAAGGGGACCACAAAAGCAAAA 2306
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 CCTAACTTCAACAAGCCCTTCTTACCTCAGAAGTCCAACAAGGGGACCACAAAAGCAAAA 2331
Query 2307 TCACCCAATCTTAGAGTGATTAAAAGAACCGAGAGAAGAACCATGATGGCTCGACCAACC 2366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 TCACCCAATCTTAGAGTGATTAAAAGAACCGAGAGAAGAACCATGATGGCTCGACCAACT 2391
Query 2367 ATCTCTGCAGCTACTAGCGCCTCTGCTGTACA 2398
||||||||||||| ||||||||||||| |||
Sbjct 2392 GTCTCTGCAGCTACCAGCGCCTCTGCTGGACA 2423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95720785685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5