BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03790.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470353 jgi|Araly1|470353|fgenesh2_kg.1__307__AT1G03790.1 2416 0.0
> Ahg470353 jgi|Araly1|470353|fgenesh2_kg.1__307__AT1G03790.1
Length=1571
Score = 2416 bits (1308), Expect = 0.0
Identities = 1494/1581 (94%), Gaps = 23/1581 (1%)
Strand=Plus/Plus
Query 1 acacaaatccctcaaaaccaaaacacatcacaaacaaaaaaaaCAAGTTAGATATTATAT 60
||||| ||| |||||||||||||||||| |||| | ||||||||||||| ||| ||| |
Sbjct 1 ACACACATCTCTCAAAACCAAAACACAT-ACAAGC-AAAAAAACAAGTT--ATA-TAT-T 54
Query 61 CATCATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCC 120
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 55 -ATCATGGATGTCGTTTGTACGGAACATCATATGAGGAAACCAACGGTGGAGATTCCTCC 113
Query 121 GAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTTCTTCCCCTCGCTCGCC 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 114 GAGAAAGCTTCTTTTATCTTCCAAGAGTTTTTCTTCTGATTCTTCTTCCCCTCGTTCGCC 173
Query 181 GCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAG------- 233
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 174 GCGTAAACATAACTGGAACAAAAGCAACAAGATCACATCTGAACATGAAGAAGACAACTT 233
Query 234 --ACAACGAAGACAACAAC-AGAGAGAATAAAGAGTACTGTTATGATTCTGACTCTGATG 290
||||||||||||||||| || |||| |||||||||||||||||| || ||||||||||
Sbjct 234 CAACAACGAAGACAACAACAAG-GAGATTAAAGAGTACTGTTATGACTCCGACTCTGATG 292
Query 291 ATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTA 352
Query 351 GCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTC 410
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 353 GCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAAAAAGCTCGCCGTC 412
Query 411 GTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTG 470
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GTGATCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTG 472
Query 471 ATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATC 530
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 473 ATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTTGAGTGTTGGCTCCATC 532
Query 531 CTATTCGTTACCGTACTGAAGCTTGTAAAGACGGTAAACACTGTAAAAGGAAAGTCTGTT 590
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 533 CTATTCGTTACCGTACTGAAGCTTGTAAAGATGGTAAGCACTGTAAAAGGAAAGTCTGTT 592
Query 591 TCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCT 650
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 593 TCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAAAACGTTTCCGGCGGCT 652
Query 651 CAGCGTCGCCTTCTCCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCA 710
|||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 653 CAGCGTCGCCGTCTCCTGCCGCGAAGAATCCGTGTTGTTTGTTTTGTAGCAGCTCTCCCA 712
Query 711 CGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTA 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTG 772
Query 771 TGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCG 830
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 773 TGTCTCCGGCTCATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCATCTGCCG 832
Query 831 TTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTATAAAGACGTTTTGAGCGAGCTTGTGA 890
|||| ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 833 TTTCTGCCGCTGCAGCCGCTGGTTCAGTTAACTATAAAGACGTTTTGAGCGAGCTGGTGA 892
Query 891 ATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTA 950
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 893 ATTCGTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCTTCGTCACCGGTTA 952
Query 951 CAACTCCGGTTTCCGCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGC 1010
||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 953 CAACTCCGGTTTCCGCTGCAGCTGCCGCGTTTGCCTCGTCCTGCGGTTTGAGCAATCAGC 1012
Query 1011 GTCTCCATCTCCAGCAACA-ACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGCCTTCC 1069
||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1013 GTCTCCATCTCCAA-AACTTACAACCAAGTAGTCCTTTGCAATTTGCTCTTTCGCCTTCC 1071
Query 1070 ACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCT 1129
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1072 ACTCCAAGCTACCTAACTAACTCACCTCAGGCGAACTTCTTTAGCGATGATTTCACTCCT 1131
Query 1130 CGCCGGAGACAGATGAACGATTTCACGGCGATGACGGCCGTTAGGGAGAATACTAACATT 1189
||||| ||||||||||||||||||||||||||| | || ||||||||||| |||| ||||
Sbjct 1132 CGCCGAAGACAGATGAACGATTTCACGGCGATGGCAGCGGTTAGGGAGAAGACTAGCATT 1191
Query 1190 GAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACTTGAGGG 1249
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 1192 GAGGATGGTTCTTGTGGTGACCCTGATCTTGGATGGGTCAATGATCTCCTGACTTGATGG 1251
Query 1250 ATTGACGGTGGAGATTCGCCGGGAGG-AGATCTGACTT-GAGAATGTAAATTTCGGTGGA 1307
|||||||||||||| | ||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 1252 ATTGACGGTGGAGAGAAGACGGGAGGGAGATCTGACTTTGAGAATGTAAATTTCGGGGGA 1311
Query 1308 AGAATTTTAATCACATTCATGAATCATGGGAGAATAATCGGTTCGTAACGGTTTGGTCAA 1367
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1312 GGAGTTTTAATCACATTCATGAATCATGGGAGAATAGTCGGTTCGTAACGGTTTGGTCAA 1371
Query 1368 TGCATGGAGAGATTGTTTGTTCAAATTTATTTTGAAGAtttttttttttAGCTAATTCAG 1427
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1372 TGCATGGAGAGATTGTT-GTTCAAATTTGTTTTGAAGATTTTTTTTTTTAGCTAATTCAG 1430
Query 1428 AAGTGTCTTGTGTATTGTCGtttattttttagaattttctttttctgatgggatttttAC 1487
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1431 AAGTGTCTTGTGTATTGTCGTTTATTTTTTAGAATTTTCTCTGTCTGATGGGATTTTTAC 1490
Query 1488 CAAATAATATGTTGAACTTGTAATATCTTGTGGACTCGGATTGTGCAATGTTTCACCAAT 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CAAATAATATGTTGAACTTGTAATATCTTGTGGACTCGGATTGTGCAATGTTTCACCAAT 1550
Query 1548 TCTATAGATATTTTTCCCTTT 1568
|||||| ||||||||||||||
Sbjct 1551 TCTATAAATATTTTTCCCTTT 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5