BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03800.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919050 jgi|Araly1|919050|scaffold_100331.1 688 0.0
> Ahg919050 jgi|Araly1|919050|scaffold_100331.1
Length=686
Score = 688 bits (372), Expect = 0.0
Identities = 521/593 (88%), Gaps = 10/593 (2%)
Strand=Plus/Plus
Query 139 AAGAGTAAGGAAGTGCGTTACAGGGGTGTAAGGAGGAGACCATGGGGGAGATATGCTGCG 198
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 66 AAGAGTAAGGAACTGCGTTACAGGGGTGTAAGGAGGAGACCATGGGGGAGATACGCTGCG 125
Query 199 GAGATCCGTGATCCGGTAAAGAAAAAACGGGTCTGGCTCGGGTCCTTCAACACGGGGGAG 258
||||||||||||||| ||||||||||||||||||||||||| || || |||| |||| |
Sbjct 126 GAGATCCGTGATCCGATAAAGAAAAAACGGGTCTGGCTCGGATCTTTTTACACTGGGGTG 185
Query 259 GAAGCCGCCAGAGCCTACGACTCCGCTGCCATAAG-GTTTCGA-GGATCGAAAGCTACTA 316
||||||||||||||||||||||||||||||| || ||||| | ||| | ||||| | |
Sbjct 186 GAAGCCGCCAGAGCCTACGACTCCGCTGCCA-GAGAGTTTC-ACGGAGCCAAAGCAAAAA 243
Query 317 CTAACTTCCCTCTAATCGGATACTATGGGATTTCTTCGGCGACGCCGGTGAACAACAACC 376
| ||||||| ||| | ||| | |||| | |||||| |||||||||||||||| ||
Sbjct 244 CCAACTTCCGTCTCCTTGGAGAAGATGGAAACGCTTCGGTGACGCCGGTGAACAACGCCC 303
Query 377 TTTCCGAGACGGTGAGTGATGGAAATGCCAACCTCCCTCTCGTTGGAGACGATGGGAATG 436
|||| || |||| | |||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 304 TTTCTGAAACGGCGCCTGATGGAAATGCCAACTTCCTTCTCGTTGGAGACGATGTGAATG 363
Query 437 CTTTGGCTTCT-CCGGTGAACAACACCCTTTCCGAAACGGCGCGTGATGGAACACTTCCA 495
||| ||| | | ||| |||||| ||||||| ||||| ||| |||||||||||||||||
Sbjct 364 CTTCGGC-GATGCTGGTTAACAACTCCCTTTCTGAAACAGCGTGTGATGGAACACTTCCA 422
Query 496 TCGGATTGTCACG-ACATGTTATCTCCGGGGGTGGCTGAAGCGGTTGCTGGATTTTTCTT 554
| ||||||||| | || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTGGATTGTCA-GAACTTGTTGTCTCCGGGGGTGGCTGAAGCGGTTGCTGGATTTTTCTT 481
Query 555 AGATCTG-CCTGAAGTTATTGCGTTGAAAGAGGAGCTTGATCGAGTTTGTCCTGACCAGT 613
||||| | || || | || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 482 AGATCCGTCC-GATGCTACTGCGTTGAAAGAGGAGCTTGATCGAGTTTGTCCAGACCAGT 540
Query 614 TTGAGTCCATTGATATGGGGTTGACTATTGGTCCTCAAACCGCCGTGGAAGAGCCTGAGA 673
||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 541 TTGCGTCCATTGATATGGGGTTGAGTATTGGTCCTCAAACTGCCGTGGAAGAGCCTGAGA 600
Query 674 CTTCCTCCGCCGTGGATTGTAAGCTGCGAATGGAACCGGATCTTGACCTCAAC 726
|||||||||||||||||||| ||||||||| |||||||||||| ||||| |||
Sbjct 601 CTTCCTCCGCCGTGGATTGTGAGCTGCGAAAGGAACCGGATCTGGACCTTAAC 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5