BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03810.1

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg311471 jgi|Araly1|311471|fgenesh1_pm.C_scaffold_1000251           562    7e-160


> Ahg311471 jgi|Araly1|311471|fgenesh1_pm.C_scaffold_1000251
Length=435

 Score =  562 bits (304),  Expect = 7e-160
 Identities = 383/420 (91%), Gaps = 9/420 (2%)
 Strand=Plus/Plus

Query  1    ATGTCGACGACGGCGAATACTAACGCGACGACTGCGCCGAAGCGTAAACCAGTGTTTGTG  60
            ||||||| ||||||| ||||||| ||||||||||||||||| || ||||||||||| || 
Sbjct  1    ATGTCGATGACGGCGGATACTAAAGCGACGACTGCGCCGAAACGGAAACCAGTGTTCGTA  60

Query  61   AAGGTGGATCAGCTCAAACCAGGAACCAGCGGCCATACTCTGATCGTCAAAGTCCTTGAA  120
            |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   AAGGTGAATCAGCTCAAACCAGGAACCAGCGGCCATACTCTGATCGTGAAAGTCCTTGAA  120

Query  121  TCGAATCCCGTTAAACCGGCGATTCGTAAAAGTTCGTTGACGCAGCAGCCAATTTC-ATC  179
            ||||||||||| ||||| || ||||||| ||| |||||||  |  ||| ||| |||  ||
Sbjct  121  TCGAATCCCGTCAAACCAGCCATTCGTAGAAGCTCGTTGA--C-TCAGTCAA-TTCGGTC  176

Query  180  TCCTCGTATCGCTGAGTGCCTAATTGGTGACGATACTGGATGCATTCTTTTCACCGCTCG  239
            ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  177  TCCTCGTATTGCTGAGTGTCTAATCGGTGACGATACTGGATGCATTCTTTTCACCGCTCG  236

Query  240  CAACGACCAAGTTGATCTAATGAAGACTGGAGCAACAGTTATACTGAGGAATGCGAAGAT  299
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  CAATGACCAAGTTGATCTAATGAAGACTGGAGCAACAGTTATACTGAGGAATGCGAAGAT  296

Query  300  CGACTTGTTCAAGGACACTATGAGAATGGCTGTTGACAGATGGGGACGCATTGAAATAAC  359
            |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||
Sbjct  297  CGACTTGTTCAAGGACACGATGAGAATGGTTGTTGACAGATGGGGACGCATTGAAGTCAC  356

Query  360  CGG-TCCTGTTTCGTTCGAGGTTAACCG-GGCCAACAATCTCTCTCTGGTCGAGTATGAA  417
             || |||||||||||| |||||||| || ||| ||||||||||||||| |||||||||||
Sbjct  357  -GGATCCTGTTTCGTTTGAGGTTAATCGAGGC-AACAATCTCTCTCTGATCGAGTATGAA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15567480312


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5