BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03820.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919052 jgi|Araly1|919052|scaffold_100333.1 1024 0.0
> Ahg919052 jgi|Araly1|919052|scaffold_100333.1
Length=706
Score = 1024 bits (554), Expect = 0.0
Identities = 667/718 (93%), Gaps = 21/718 (3%)
Strand=Plus/Plus
Query 33 ACATTATTCTCTCTTCATTGATGGCTTCTTTTGCTCTGAAACCCATTTTTTGTTTCATTG 92
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAGTATTCTCTCTTCATCGATGGCTTCTTTTGCTCTGAAACCCATTTTTTGTTTCATTG 60
Query 93 CTGTTTTTTGCTTCATCGTCCACAATGTTGAAGCTAGAGAGGGTAAGCTCTTCTTTAGCA 152
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CTGTTTTTTGCTTCATTGTTCACAATGTTGAAGCTAGAGAAGGTAAGCTCTTCTTTAGCA 120
Query 153 AGTTCACTCACATAGATCGTCCTAACAACAAAGATGTCG-CTCTATCTCCAGCTCCAGCT 211
||||||||||| ||||||| |||||||||||||| || | ||||| ||||||||||||||
Sbjct 121 AGTTCACTCACTTAGATCGCCCTAACAACAAAGAGGT-GTCTCTAACTCCAGCTCCAGCT 179
Query 212 CCCGGACTAGCCCAAGCTAATGGAAGACTCGGAAATGGGTCTTTCGGGCCTGGTTCCGGT 271
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 CCCGGACTAGCTCAAGCTAATGGAAGACTCGGAGATGGGTCTTTCGGGCCTGGTTCCGGT 239
Query 272 ATGATTCCTCAAACCAAAGAGTCATGGCCAAGTT-CATCCACTACAACAGACGAAGAGTT 330
||||||||||||||||||||||||||||| ||| |||| ||||| || |||||||| ||
Sbjct 240 ATGATTCCTCAAACCAAAGAGTCATGGCCG-GTTTCATCTACTACCACGGACGAAGACTT 298
Query 331 TGAGAAATTGATGGCTACATTTGACGAAGAAAAGAATAC-CAAGTTACCCGAGGCATTCG 389
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 299 TGAGAAATTGATGGCTACATTTGACGAAGAAAAGAATACTCA-GTTACCCGAGTCATTCG 357
Query 390 AGGAAGAAGAAGAATCTGAAGATTCGGAAGATCTCAATGAGCCAAAGGATAAGTacaaca 449
||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 358 AGGAAGAAGAAGAGTCCGAAGATTCGGAAGATCTCAATGAGCAAAAGGATAAGTATAACA 417
Query 450 acaacaacaacaaTAATGGATACACTTACACTACTAA---CAATTATAATGACAATGGGA 506
|| | ||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 418 ACGA---------TAATGGAAACACTTACACTACTAATAACAACTATAATGACAATGGGA 468
Query 507 GAGGTTACGGTAATGAAGAAGAGAAGCAGGGGATGAGTGACACAAGGGTTATGGAGAACG 566
|||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 469 GAGGTTACGGTAATGACGAAGAGAAGCAAGGGATGAGTGACACAAGGTTTATGGAGAACG 528
Query 567 GTAAGTATTTCTACGACACAAGAGGTAGGAATTCAGAAAACACCCCT---AGTCGCGGGT 623
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 529 GTAAGTATTTCTACGACACAAGAGGTAGGAATTCAGAAAACACCCCTGCTAGTCGCGGGT 588
Query 624 ATGAGAATGCTCGAGGAAATGATCATACCAACGAGTTTGAAACTATGGAGGAATACTACA 683
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 589 ATGAGAATGCTCGAGGAAATGATCATCCCAACGAGTTTGAAACTATGGAGGAATACTACA 648
Query 684 AGAGCTTGGAGGGTAGTCAAGAAGAGTATGAGCCTTAGAAGGAAATTGTATTTGAGAA 741
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 649 AGAGCTTGGAGGGTAGTCAAGAAGAGTATGAGCCTTAGAAAGAAATGGTATTTGAGAA 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5