BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03840.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470357 jgi|Araly1|470357|fgenesh2_kg.1__311__AT1G03840.2 2158 0.0
> Ahg470357 jgi|Araly1|470357|fgenesh2_kg.1__311__AT1G03840.2
Length=1530
Score = 2158 bits (1168), Expect = 0.0
Identities = 1429/1548 (92%), Gaps = 45/1548 (3%)
Strand=Plus/Plus
Query 73 ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCtcatcaaca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCTCATCAACA 60
Query 133 actgatcatgttgatcatcatcatcatgatcaacatgaatccctcaatcCTCCTCTTGTC 192
||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||
Sbjct 61 ACTGATCATGTTGATCATCATCATCATGA--A-CATGACTCCCTTAATCCTCCTCTTGTC 117
Query 193 AAGAAGAAGAGAAACCTCCCTGGAAATCCTGATCCAGAAGCTGAGGTCATAGCTCTATCT 252
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 AAGAAGAAGAGAAACCTCCCTGGAAATCCTGATCCAGAAGCCGAGGTCATAGCTCTATCC 177
Query 253 CCAAAGACACTTATGGCCACAAATCGTTTCCTCTGCGAGATATGTGGAAAAGGGTTTCAA 312
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 178 CCAAAGACACTTATGGCCACAAATCGATTCCTATGCGAGATATGTGGAAAAGGTTTTCAA 237
Query 313 AGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAG 297
Query 373 AGGACGAGCAAAGAAGTAAGGAAACGAGTGTATGTATGTCCAGAAAAGAGTTGCGTCCAC 432
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 298 AGGACAAGCAAAGAAGTAAGAAAACGAGTGTATGTATGTCCAGAGAAGAGTTGCGTCCAC 357
Query 433 CACCATCCGACGAGGGCACTTGGTGATCTTACCGGCATTAAGAAACATTTTTGTCGGAAA 492
||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 358 CACCATCCGACAAGGGCTCTCGGTGACCTTACCGGCATTAAGAAACATTTTTGTCGGAAA 417
Query 493 CATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGAC 552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGAT 477
Query 553 TGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAATATAGATGCGACTGTGGTACAATT 612
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 TGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAGTATAGATGCGACTGTGGTACAATT 537
Query 613 TTCTCCAGGAGAGACAGCTTCATTACACATAGAGCGTTCTGTGACGCTTTAGCAGAAGAA 672
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 TTCTCCAGGAGAGACAGCTTCATTACACATAGAGCATTCTGTGACGCTTTAGCAGAAGAA 597
Query 673 ACCGCTAGGCTAAACGCAGCCTCGCATCTCAAAAGCTTTGCCGCAACCGCTGGTAGTAAT 732
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 598 ACCGCTAGGCTAAACGCAGCCTCACATCTCAAAAGCCTTGCTGCAACCGCTGGTAGTAAT 657
Query 733 CTAAACTATCATTATCTCATGGGGACACTTATCCCATCACCATCA-CTACCACAACCACC 791
||||||||||||||||||||||| ||||||||||||||||||||| | || || ||||||
Sbjct 658 CTAAACTATCATTATCTCATGGGCACACTTATCCCATCACCATCATC-ACAACCACCACC 716
Query 792 GTCGTTTCCGTTCGGACCACCGCAACCGCAACATCATCACCACCACCAATTCCCAATCAC 851
||||||||| |||||||||||||||||||||||||| ||||| || | ||||| ||| |
Sbjct 717 GTCGTTTCCATTCGGACCACCGCAACCGCAACATCACCACCA--AC-ATTTCCCTATCCC 773
Query 852 AACCAACAACTTCGATCATCA--A-------GACGTCATGAAACCAGCGTCTACGCTCTC 902
||||| || |||||||||||| | |||||||||||||| |||||| |||||||
Sbjct 774 AACCACCACCTTCGATCATCATCATCATCAAGACGTCATGAAACCTGCGTCTTCGCTCTC 833
Query 903 TTTATGG-TCGGGAGGAAATATTAATCATCATCAGCAAGTGACCATCGAGGACCGTATGG 961
||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 834 TTTATGGAT-GGGAGGAAATATTAACCATCATCAGCAGGTGACCATCGAGGACCGTATCG 892
Query 962 CGCCGCAGCCGCATTCACCGCAA-GAGGATTACAATTGGGTTTTCGGAAACGCGAATAAT 1020
| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 893 CACCGCAGCCGCATTCGCCA-AACGAGGATTACAATTGGGTTTTCGGAAACGCGAATAAT 951
Query 1021 CACGGCGAGTTAATAACGACGAGCGATTCACTCATTACTCATGACAATAATATTAATATC 1080
| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 952 CGCGGTGAGCTAATAACGACGAGCGATTCACTCATTACACATGACAATAATATTAATATC 1011
Query 1081 GTCCAGAGTAAGGAAAACGCTAACGGGGCAACTTCTCTTTCCGTGCCTTCTCTTTTTAGC 1140
|||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||
Sbjct 1012 GTCCAGAGTAAGGAAAACACAAACGCGGCTACTTCTCTTTCCGTGCCTTCTCTTTTTAGC 1071
Query 1141 AGCGTTGACCAAATTACCCAAGACGCAAACGCTGCTTCTGTGGCTGTTGCAAATATGTCG 1200
||||| |||||||||||||||||||||||||| ||||||| | ||| |||||
Sbjct 1072 AGCGTCGACCAAATTACCCAAGACGCAAACGCGGCTTCTG---C------AAACATGTCA 1122
Query 1201 GCGACTGCGTTACTCCAAAAAGCTGCTCAGATGGGAGCGACTTCTTCTACGTCACCAACG 1260
|||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1123 GCGACTGCGTTACTTCAAAAAGCGGCTCAGATGGGATCGACTTCTTCTACGTCACCGACG 1182
Query 1261 ACGACGATTACTACCGACCAATCAGCGTATCTTCAGAGTTTTGC----A---TC---GA- 1309
||||| || || ||||||||||||| |||||||||||||||||| | || ||
Sbjct 1183 ACGACAATCACCACCGACCAATCAGGGTATCTTCAGAGTTTTGCGTCGAAAATCTCCGAC 1242
Query 1310 -AGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAGGTTCTTTGCTTCGTTTGGATCG 1368
|||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 1243 CAGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAAGTTCTTCGCTTTGTTTGGATCG 1302
Query 1369 AACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCACGAGATCGGGAACCCTAGA 1428
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1303 AACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCATGAGATCGGGAACCCTAGA 1362
Query 1429 AACGGCGTTACGGTCGTTTCGGGGATGGGTGAATTACAGAATTACCCTTGGAAGCGTAGA 1488
||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1363 AACGGTGTTAGGGTCGTTTCGGGGATTGATGAATTACAGAATTACCCTTGGAAGCGTAGA 1422
Query 1489 AGAGTTGATATTGGGAATGCGGGAGGAGGAGG-G--CAAACTCGGGATTTTCTTGGGGTT 1545
|||||||| |||||||| || ||||||||||| | |||||||||||||| || ||||||
Sbjct 1423 AGAGTTGAGATTGGGAACGCAGGAGGAGGAGGTGGGCAAACTCGGGATTTCCTAGGGGTT 1482
Query 1546 GGTGTACAAACAATATGCCATTCTTCCTCTATCAATGGATGGATTTGA 1593
||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1483 GGTGTTCAAACAGTGTGCCATTCTTCCTCTATCAATGGATGGATTTGA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5