BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03850.1

Length=887
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470358 jgi|Araly1|470358|fgenesh2_kg.1__312__AT1G03850.2          732    0.0  


> Ahg470358 jgi|Araly1|470358|fgenesh2_kg.1__312__AT1G03850.2
Length=591

 Score =  732 bits (396),  Expect = 0.0
 Identities = 459/488 (94%), Gaps = 10/488 (2%)
 Strand=Plus/Plus

Query  1    AAACGAACCCAACTACACAAG--tctctctctcttttcccatttctccctctctctcttt  58
            |||| ||||||||||||||||  ||||||||||||||||||  |||| ||| ||||||||
Sbjct  1    AAACTAACCCAACTACACAAGTCTCTCTCTCTCTTTTCCCA--TCTCTCTCCCTCTCTTT  58

Query  59   gtctctctATCATCAATTATGCAAAAAGCAATTCGACCATACGAGTCACCGTGGACGAAG  118
            ||||||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||
Sbjct  59   GTCTCTCTAACATCAATTATGCAAAAAGCAATAAGACCATACGAGTCATCGTGGACGAAG  118

Query  119  ACCGTGCCGGGCAATAGCATTTTCCTTTTAAAGAATGAAGATAAACcatcatcatcatca  178
            ||||| |||||||||||||||||||||| |||||||||||||||| |  |||||||||||
Sbjct  119  ACCGTACCGGGCAATAGCATTTTCCTTTCAAAGAATGAAGATAAA-C--CATCATCATCA  175

Query  179  tcatcattatcatGGTTAACATCAGGATCACCAAAGCCAACATCTATAAGCAATAAGAGA  238
            ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct  176  TCATCATTATCATGGTTAACATCAGCATCACCAAAGCCAACATCTTTAAGCACTAAGAGA  235

Query  239  TCAAGCAACCTAGTTGTGATGGAGAATGCTGTGGTGGTGTTTGCAAGGAGAGGCTGTTGT  298
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  TCAAGCAACCTAGTGGTGATGGAGAATGCTGTGGTGGTGTTTGCAAGGAGAGGCTGTTGT  295

Query  299  TTGGGACACGTGGCAAAACGGCTGCTACTGACACATGGCGTGAATCCAGTGGTGGTTGAG  358
             ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  296  ATGGGACACGTGGCGAAACGGTTGCTACTGACACATGGCGTGAATCCATTGGTGGTTGAG  355

Query  359  ATTGGTGAAGAAGACAAC-A-A-CAACTACGACAATATCGTAAGTGATAAAGAGAAATTA  415
            |||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||
Sbjct  356  ATTGGTGAAGAAGACAACAACACCAACTACGACAATATCATAAGTGATAAAGAGAAATTA  415

Query  416  CCTATGATGTACATAGGAGGAAAGTTGTTTGGAGGATTGGAAAATCTGATGGCTGCTCAT  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  416  CCTATGATGTACATAGGAGGAAAGTTGTTTGGAGGATTGGAAAATCTGATGGCGGCTCAT  475

Query  476  ATTAATGG  483
            ||||||||
Sbjct  476  ATTAATGG  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32861954454


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5