BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03860.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470361 jgi|Araly1|470361|fgenesh2_kg.1__315__AT1G03860.1 1781 0.0
Ahg356670 jgi|Araly1|356670|fgenesh1_pg.C_scaffold_8000457 717 0.0
Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1 481 6e-135
> Ahg470361 jgi|Araly1|470361|fgenesh2_kg.1__315__AT1G03860.1
Length=1205
Score = 1781 bits (964), Expect = 0.0
Identities = 1153/1237 (93%), Gaps = 41/1237 (3%)
Strand=Plus/Plus
Query 21 TTTCTCATTTCTAAAACCCTAAGCTTCGCCGGCAGCTCCGATCGTGATCTTTCATAAATC 80
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2 TTTCTCATTTCTAAAACCCTAAGCTTCGCCGGCAGCTCCGATCGTGATCTTTCATAAACC 61
Query 81 CTACCATCGCC-GTCGATTAAGAGCTGAGCTCAGGAAATGAGTTTCAACAAAGTTCCCAA 139
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTACCATCGCCGGT-GATTAAGAGCTGAGCTCAGGAAATGAGTTTCAACAAAGTTCCCAA 120
Query 140 CATTCCTGGAGCTCCTGCTCTCTCTGCCCTTCTTAAGGTCAGCGTTATTGGTGGGCTCGG 199
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 121 CATTCCTGGATCTCCTGCTCTCTCTGCCCTTCTTAAGGTCAGTGTTATTGGTGGCCTTGG 180
Query 200 TGTCTATGCCCTTACTAATAGTCTCTACAATGTCGATGGAGGACACCGTGCTGTCATGTT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTCTATGCCCTTACTAATAGTCTCTACAATGTCGATGGAGGACACCGTGCTGTCATGTT 240
Query 260 CAACCGATTAACTGGTATCAAGGAAAAGGTGTACCCAGAAGGCACACATTTTATGGTGCC 319
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct 241 CAACCGATTAACTGGTATCAAGGAAAAGGTATACCCAGAGGGCACACATTTTATGATGCC 300
Query 320 ATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGACCTTACCTTGTAGAGAGCAC 379
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 ATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGACCTTATCTTGTAGAGAGCAC 360
Query 380 CACTGGTAGTCATGATCTTCAGATGGTGAAAATTGGATTAAGGGTTCTCACACGTCCCAT 439
||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 CACCGGTAGTCATGACCTTCAGATGGTGAAAATTGGACTAAGGGTTCTCACACGTCCCAT 420
Query 440 GGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGGCGAGAACTACAGCGAAAGGGTTCT 499
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 421 GGGTGATCGTTTGCCTCAGATTTACCGAACCCTCGGCGAGAACTACAGTGAAAGGGTTCT 480
Query 500 TCCTTCCATCATCCATGAAACCCTAAAAGCAGTGGTAGCTCAGTACAATGCAAGCCAGCT 559
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 ACCTTCCATCATCCATGAAACCCTAAAAGCCGTGGTAGCTCAGTACAATGCAAGCCAGCT 540
Query 560 CATTACCCAGAGAGAAGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTC 619
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATTACACAGAGAGAAGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTC 600
Query 620 TAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTGACATTCGGCAAAGAGTT 679
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 TAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTCACATTCGGCAAAGAGTT 660
Query 680 CACCGCAGCTATCGAGGCAAAACAAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCAT 739
||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 661 CACCGCAGCAATCGAGGCAAAACAAGTCGCTGCTCAGGAAGCTGAAAGGGCTAAGTTCAT 720
Query 740 TGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGGGAGAAGCTAA 799
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 TGTGGAGAAAGCCGAGCAAGACAGGAGAAGTGCGGTTATCCGTGCACAGGGAGAAGCTAA 780
Query 800 AAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAA 859
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 AAGTGCTCAGCTTATCGGACAAGCAATTGCGAATAATCAGGCATTCATCACTCTGAGAAA 840
Query 860 GATTGAAGCTGCGAGAGAGATTGCACAGACCATTGCACAATCTGCTAACAAGGTTTACCT 919
||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 841 GATTGAAGCGGCGAGAGAGATTGCTCAGACCATTGCACTATCTGCTAACAAAGTTTACCT 900
Query 920 GAGCTCCAACGATCTGTTGCTTAACCTTCAAGAAATGAACTTGGAGCCTAA------GAA 973
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 GAGCTCCAACGATCTGTTGCTTAACCTTCAAGAAATGAACTTGGAGCCTAACCCTAAGAA 960
Query 974 GTAAAAGAGAAGGAACGAGTAAGTTTCTTCATTTCATATTCATTTCATTTAAAAGATCTC 1033
|||||||||||||||||||||||||| | | | | | | | ||||
Sbjct 961 GTAAAAGAGAAGGAACGAGTAAGTTT-T--A----A-A---A----A---A-----TCTC 997
Query 1034 TCCGCCTTGGAAGTAAAGGATGGGTT-GGTGTTTGACCAAATGACCCTTTCTCGTGACTG 1092
|||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||
Sbjct 998 TCCGCCTTGGAAGTAAAGAACGGGTTCGGTGTTTGACCAAATGACCCCTTCTCGTGACTG 1057
Query 1093 ATTCTGAAAATAGTCTTTAAGAGGACATATTGAGAGAGACGCAGATTGGCTTTGGTCAGT 1152
||||||||||||||||||||| |||||||||| || | |||||||||||||||||||
Sbjct 1058 ATTCTGAAAATAGTCTTTAAGCGGACATATTGCGA----CTCAGATTGGCTTTGGTCAGT 1113
Query 1153 ATTATTCATCATTTTCAATGAAACTTTTTGTTGATATTTTCCTGTGTTTCCCCGGACAAT 1212
|||||||||||| ||||||||||||||||||||||||| || | | || ||| |||
Sbjct 1114 ATTATTCATCATGTTCAATGAAACTTTTTGTTGATATTCAACT-T-T--CCT-GGAAAAT 1168
Query 1213 TGATGAAGTTGAATTTAAAACTCAATAATATTCATAT 1249
|||||||||||||||| ||||| ||||||||||||||
Sbjct 1169 TGATGAAGTTGAATTTTAAACTTAATAATATTCATAT 1205
> Ahg356670 jgi|Araly1|356670|fgenesh1_pg.C_scaffold_8000457
Length=867
Score = 717 bits (388), Expect = 0.0
Identities = 714/869 (82%), Gaps = 32/869 (4%)
Strand=Plus/Plus
Query 117 ATGAGTTTCAACAAAGTTCCCAACATTCCTGGAGCTCCTGCTCTCTCTGCCCTT-CTTAA 175
|||| | |||| |||||||| ||| |||||||| | |||| ||||||| |||| |||||
Sbjct 1 ATGAATGTCAAAAAAGTTCCAAACGTTCCTGGATCACCTGGACTCTCTG-CCTTGCTTAA 59
Query 176 GGTCAGCGTTATTGGTGGGCTCGGTGTCTA-TGCCCTTACTAATAGTCTCTACAATGTCG 234
| | | |||||||||||||| || |||| || | || || |||| | ||||||||||
Sbjct 60 GCTTGGTGTTATTGGTGGGCTTGGACTCTATTG-CATTGGTAGTAGTATGTACAATGTCG 118
Query 235 ATGGAGGACACCGTGCTGTCATGTTCAACCGATTAA-CTGGTATCAAGGAAAAGGTGTAC 293
|||||||||||||||| || |||| ||||| || | | |||||||| || ||||| ||
Sbjct 119 ATGGAGGACACCGTGCCATCGTGTTTAACCGGTTTAGC-GGTATCAAAGATAAGGTTTAT 177
Query 294 CCAGAAGGCACACATTTTATGGTGCCATGGTTTGAAAG-GCCAATCATCTATGACGTTCG 352
||||| || |||||||||| | | |||| ||||||||| || ||| ||||| || |||||
Sbjct 178 CCAGAGGGTACACATTTTAAGATACCATTGTTTGAAAGAGC-AATTATCTACGATGTTCG 236
Query 353 TGCACGACCTTACCTTGTAGAG-AGC-ACCACTGGTAGTCATGATCTTCAGATGGTGAAA 410
||| ||||||||| ||| ||| ||| | ||||| |||||||||||||| | ||||| |
Sbjct 237 TGCTCGACCTTACGTTG-AGAATAGCGAA-ACTGGAAGTCATGATCTTCAAACGGTGACA 294
Query 411 ATTGGA-TTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTC-AGATTTACCGAA 468
||||| ||| ||||||| |||||||||||||| ||||| ||||| | |||||||| |||
Sbjct 295 ATTGGGCTTA-GGGTTCTTACACGTCCCATGGGAGACCGATTGCC-CGAGATTTACAGAA 352
Query 469 CCCTTGG-CGAGAACTACAGCGAAAG-G-GTTCTTCCTTCCATCATCCATGAAACCCTAA 525
| || || | |||| ||| | || || | ||||| |||||||| ||| | ||||| || |
Sbjct 353 CACTCGGTC-AGAATTAC-G-GAGAGCGAGTTCTCCCTTCCATTATCAACGAAACACTGA 409
Query 526 AAGCAGTGGTAGCTCAGTACAATGCAAGCCAGCTCATTACCCAGAGAGAAGCTGTGAGCA 585
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 410 AAGCAGTAGTGGCTCAGTACAATGCAAGCCAGCTCATTACACAGAGAGAAGCTGTGAGTA 469
Query 586 GAGAGATACGCAAGATTCTGACAGAGCGGGCTTCTAACTTTGACATTGCTCTT-GATGAT 644
| ||||||||||| ||| |||||||||| || ||||| || |||||||| || ||||||
Sbjct 470 GGGAGATACGCAATATTGTGACAGAGCGAGCATCTAAATTCAACATTGCT-TTAGATGAT 528
Query 645 GTCTCCATCACGA-CTCTGACATTCGGCAAAGAGTTCACCGCAGCTATCGAGGCA-AAAC 702
|| |||||||| | | || | ||| |||||||||||||| | ||| || ||| | ||||
Sbjct 529 GTTTCCATCACAAAC-CTCAAATTTGGCAAAGAGTTCACTGAAGCAATTGAGA-AGAAAC 586
Query 703 AAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAG-CCGAACAAGAC 761
||||||| ||||||||||| |||||||| |||||||| || || |||| |||| |||||
Sbjct 587 AAGTTGCGGCTCAGGAAGCAGAACGGGCGAAGTTCATAGTCGA-AAAGGCCGAGGAAGAC 645
Query 762 AGGAGAAGTGCGGTTATCCGTGCGCAGGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAA 821
| || |||||| |||||||| || |||||||||||||| ||||||||||| || || |||
Sbjct 646 AAGAAAAGTGCTGTTATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAGCTCATAGGCCAA 705
Query 822 GCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATT 881
|| ||||| |||||| | || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 706 GCTATTGCAAACAATGAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATA 765
Query 882 GCACAGACCATTGC-ACAATCTGCTAACAAGGTTTACCTGAGCTCCAACGATCTGTTGCT 940
|| |||||||| || | | || ||||||||||||||||| | ||||| ||||| |||||
Sbjct 766 GCTCAGACCATAGCTAGA-TCGGCTAACAAGGTTTACCTAAACTCCAGTGATCTCTTGCT 824
Query 941 TAACCTTCAAGAAATGAACTTGGAGCCTA 969
||| || |||| |||||||||||||||||
Sbjct 825 TAATCTCCAAGCAATGAACTTGGAGCCTA 853
> Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1
Length=1113
Score = 481 bits (260), Expect = 6e-135
Identities = 614/782 (79%), Gaps = 36/782 (5%)
Strand=Plus/Plus
Query 183 GTTATTGGTGGGCTCGGTGTCTA-TGCCCTTACTA-A-TAGTCTCTACAATGTCGATGGA 239
|||||||||||||||||| | || || | ||| | | | |||||||||||||||||||
Sbjct 157 GTTATTGGTGGGCTCGGTCTTTACGGCGC-TAC-ACACT-CTCTCTACAATGTCGATGGA 213
Query 240 GGACACCGTGCTGTCATGTTCAACC-GATTAACTGGTATCAAGGAAAAGGTGTACCCAGA 298
|| || || || || | || |||| | || ||||||||| || ||||| ||||| ||
Sbjct 214 GGTCATCGAGCCATCGTCTTTAACCGGCTT-GTTGGTATCAAAGACAAGGTCTACCCTGA 272
Query 299 AGGCACACATTTTATGGTGCCATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCAC- 357
|| || || ||||| | || ||||| ||||||||||||||||||||||||||||||
Sbjct 273 GGGTACTCACCTTATGATTCCGTGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAA 332
Query 358 GACCTTACCTTGTAGAGAGCACCA-CTGGTAGTCATGATCTTCAGATGGTGAAAATTGGA 416
| ||||| || || ||||| || | | || || | |||||| |||||||| || |||||
Sbjct 333 G-CCTTATCTAGTTGAGAGTAC-ATCCGGGAGCCGTGATCTCCAGATGGTTAAGATTGGG 390
Query 417 -TTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGG 475
|| ||||||| || ||||| |||| ||| | || || | ||||| |||||||
Sbjct 391 CTTC-GGGTTCTTACCCGTCCTATGGCCAACCAACTACCAGAGGTATACCGGTCCCTTGG 449
Query 476 CGAGAACTACAGCGAAAGGGTTCTT-CCTTCCATCATCCATGAAACCCTAAAAGCAGTGG 534
||||| ||| |||| || ||| || ||||| ||||||||||| ||| | ||||| ||||
Sbjct 450 TGAGAATTACCGCGAGAGAGTT-TTGCCTTCTATCATCCATGAGACCTTGAAAGCTGTGG 508
Query 535 TAGCTCAGTACAATGCAAGCCAGCTCATTACCCAGAGAGAAG-CTGTGAGCAGAGAGAT- 592
| |||||||||||||| |||||||| |||||||||||||| | | ||||| ||||| ||
Sbjct 509 TTGCTCAGTACAATGCGAGCCAGCTTATTACCCAGAGAGA-GTCGGTGAGTAGAGAAATC 567
Query 593 ACGCAAGATTCTGACAG-AGCGGGCTTCTAACTT-TGACATTGCTCTTGATGATGTCTCC 650
| | || || || || | | || || | ||||| | ||||||| || |||||||| |||
Sbjct 568 AGGAAA-ATCCTAACTGCA-CGAGCCGCAAACTTCT-ACATTGCACTGGATGATGTGTCC 624
Query 651 ATCAC-GACTCTGACATTCGGCAAAG-AGTTCACCGCAGCTATCGA-GGCAAAACAAGTT 707
||||| | || ||||||| || |||| ||||||| ||||| || || || ||| || ||
Sbjct 625 ATCACAGGCT-TGACATTTGG-AAAGGAGTTCACGGCAGCCATAGAAGG-AAAGCAGGTC 681
Query 708 GCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAGCCGAACAAGACAGGAGA 767
|| ||||| || || || |||||||||||||||||||| ||||| ||||| |||| | ||
Sbjct 682 GCAGCTCAAGAGGCCGAGCGGGCTAAGTTCATTGTGGAAAAAGCTGAACAGGACAAGCGA 741
Query 768 AGTGCGGTTATCCGTGC-GCAGGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAAT 826
||||| ||||| || || | |||||||||| || ||||||||||| || || ||||||||
Sbjct 742 AGTGCCGTTATTCGCGCTG-AGGGAGAAGCCAAGAGTGCTCAGCTCATAGGTCAAGCAAT 800
Query 827 TGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATTGCACA 886
|| ||||| || || ||| | || ||||| ||||| ||||| || |||||||| |||||
Sbjct 801 CGCAAACAACCAAGCGTTCTTAACGCTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACA 860
Query 887 GACCAT-TGCACAA-TCTGCTAACAAGGTTTACCTGAGCTCCAACGATCTGTTGCTTAAC 944
|||||| | || || || || || ||||||||| ||||||| |||||||| |||||||||
Sbjct 861 GACCATCT-CA-AAGTCGGCAAATAAGGTTTACTTGAGCTCTAACGATCTATTGCTTAAC 918
Query 945 CT 946
||
Sbjct 919 CT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5