BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03860.1 Length=1280 Score E Sequences producing significant alignments: (Bits) Value Ahg470361 jgi|Araly1|470361|fgenesh2_kg.1__315__AT1G03860.1 1781 0.0 Ahg356670 jgi|Araly1|356670|fgenesh1_pg.C_scaffold_8000457 717 0.0 Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1 481 6e-135 > Ahg470361 jgi|Araly1|470361|fgenesh2_kg.1__315__AT1G03860.1 Length=1205 Score = 1781 bits (964), Expect = 0.0 Identities = 1153/1237 (93%), Gaps = 41/1237 (3%) Strand=Plus/Plus Query 21 TTTCTCATTTCTAAAACCCTAAGCTTCGCCGGCAGCTCCGATCGTGATCTTTCATAAATC 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2 TTTCTCATTTCTAAAACCCTAAGCTTCGCCGGCAGCTCCGATCGTGATCTTTCATAAACC 61 Query 81 CTACCATCGCC-GTCGATTAAGAGCTGAGCTCAGGAAATGAGTTTCAACAAAGTTCCCAA 139 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 CTACCATCGCCGGT-GATTAAGAGCTGAGCTCAGGAAATGAGTTTCAACAAAGTTCCCAA 120 Query 140 CATTCCTGGAGCTCCTGCTCTCTCTGCCCTTCTTAAGGTCAGCGTTATTGGTGGGCTCGG 199 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || || Sbjct 121 CATTCCTGGATCTCCTGCTCTCTCTGCCCTTCTTAAGGTCAGTGTTATTGGTGGCCTTGG 180 Query 200 TGTCTATGCCCTTACTAATAGTCTCTACAATGTCGATGGAGGACACCGTGCTGTCATGTT 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGTCTATGCCCTTACTAATAGTCTCTACAATGTCGATGGAGGACACCGTGCTGTCATGTT 240 Query 260 CAACCGATTAACTGGTATCAAGGAAAAGGTGTACCCAGAAGGCACACATTTTATGGTGCC 319 |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| Sbjct 241 CAACCGATTAACTGGTATCAAGGAAAAGGTATACCCAGAGGGCACACATTTTATGATGCC 300 Query 320 ATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGACCTTACCTTGTAGAGAGCAC 379 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 ATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGACCTTATCTTGTAGAGAGCAC 360 Query 380 CACTGGTAGTCATGATCTTCAGATGGTGAAAATTGGATTAAGGGTTCTCACACGTCCCAT 439 ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 CACCGGTAGTCATGACCTTCAGATGGTGAAAATTGGACTAAGGGTTCTCACACGTCCCAT 420 Query 440 GGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGGCGAGAACTACAGCGAAAGGGTTCT 499 |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 421 GGGTGATCGTTTGCCTCAGATTTACCGAACCCTCGGCGAGAACTACAGTGAAAGGGTTCT 480 Query 500 TCCTTCCATCATCCATGAAACCCTAAAAGCAGTGGTAGCTCAGTACAATGCAAGCCAGCT 559 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 481 ACCTTCCATCATCCATGAAACCCTAAAAGCCGTGGTAGCTCAGTACAATGCAAGCCAGCT 540 Query 560 CATTACCCAGAGAGAAGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTC 619 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATTACACAGAGAGAAGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTC 600 Query 620 TAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTGACATTCGGCAAAGAGTT 679 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 601 TAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTCACATTCGGCAAAGAGTT 660 Query 680 CACCGCAGCTATCGAGGCAAAACAAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCAT 739 ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 661 CACCGCAGCAATCGAGGCAAAACAAGTCGCTGCTCAGGAAGCTGAAAGGGCTAAGTTCAT 720 Query 740 TGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGGGAGAAGCTAA 799 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 721 TGTGGAGAAAGCCGAGCAAGACAGGAGAAGTGCGGTTATCCGTGCACAGGGAGAAGCTAA 780 Query 800 AAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAA 859 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 781 AAGTGCTCAGCTTATCGGACAAGCAATTGCGAATAATCAGGCATTCATCACTCTGAGAAA 840 Query 860 GATTGAAGCTGCGAGAGAGATTGCACAGACCATTGCACAATCTGCTAACAAGGTTTACCT 919 ||||||||| |||||||||||||| ||||||||||||| |||||||||||| |||||||| Sbjct 841 GATTGAAGCGGCGAGAGAGATTGCTCAGACCATTGCACTATCTGCTAACAAAGTTTACCT 900 Query 920 GAGCTCCAACGATCTGTTGCTTAACCTTCAAGAAATGAACTTGGAGCCTAA------GAA 973 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 901 GAGCTCCAACGATCTGTTGCTTAACCTTCAAGAAATGAACTTGGAGCCTAACCCTAAGAA 960 Query 974 GTAAAAGAGAAGGAACGAGTAAGTTTCTTCATTTCATATTCATTTCATTTAAAAGATCTC 1033 |||||||||||||||||||||||||| | | | | | | | |||| Sbjct 961 GTAAAAGAGAAGGAACGAGTAAGTTT-T--A----A-A---A----A---A-----TCTC 997 Query 1034 TCCGCCTTGGAAGTAAAGGATGGGTT-GGTGTTTGACCAAATGACCCTTTCTCGTGACTG 1092 |||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||| Sbjct 998 TCCGCCTTGGAAGTAAAGAACGGGTTCGGTGTTTGACCAAATGACCCCTTCTCGTGACTG 1057 Query 1093 ATTCTGAAAATAGTCTTTAAGAGGACATATTGAGAGAGACGCAGATTGGCTTTGGTCAGT 1152 ||||||||||||||||||||| |||||||||| || | ||||||||||||||||||| Sbjct 1058 ATTCTGAAAATAGTCTTTAAGCGGACATATTGCGA----CTCAGATTGGCTTTGGTCAGT 1113 Query 1153 ATTATTCATCATTTTCAATGAAACTTTTTGTTGATATTTTCCTGTGTTTCCCCGGACAAT 1212 |||||||||||| ||||||||||||||||||||||||| || | | || ||| ||| Sbjct 1114 ATTATTCATCATGTTCAATGAAACTTTTTGTTGATATTCAACT-T-T--CCT-GGAAAAT 1168 Query 1213 TGATGAAGTTGAATTTAAAACTCAATAATATTCATAT 1249 |||||||||||||||| ||||| |||||||||||||| Sbjct 1169 TGATGAAGTTGAATTTTAAACTTAATAATATTCATAT 1205 > Ahg356670 jgi|Araly1|356670|fgenesh1_pg.C_scaffold_8000457 Length=867 Score = 717 bits (388), Expect = 0.0 Identities = 714/869 (82%), Gaps = 32/869 (4%) Strand=Plus/Plus Query 117 ATGAGTTTCAACAAAGTTCCCAACATTCCTGGAGCTCCTGCTCTCTCTGCCCTT-CTTAA 175 |||| | |||| |||||||| ||| |||||||| | |||| ||||||| |||| ||||| Sbjct 1 ATGAATGTCAAAAAAGTTCCAAACGTTCCTGGATCACCTGGACTCTCTG-CCTTGCTTAA 59 Query 176 GGTCAGCGTTATTGGTGGGCTCGGTGTCTA-TGCCCTTACTAATAGTCTCTACAATGTCG 234 | | | |||||||||||||| || |||| || | || || |||| | |||||||||| Sbjct 60 GCTTGGTGTTATTGGTGGGCTTGGACTCTATTG-CATTGGTAGTAGTATGTACAATGTCG 118 Query 235 ATGGAGGACACCGTGCTGTCATGTTCAACCGATTAA-CTGGTATCAAGGAAAAGGTGTAC 293 |||||||||||||||| || |||| ||||| || | | |||||||| || ||||| || Sbjct 119 ATGGAGGACACCGTGCCATCGTGTTTAACCGGTTTAGC-GGTATCAAAGATAAGGTTTAT 177 Query 294 CCAGAAGGCACACATTTTATGGTGCCATGGTTTGAAAG-GCCAATCATCTATGACGTTCG 352 ||||| || |||||||||| | | |||| ||||||||| || ||| ||||| || ||||| Sbjct 178 CCAGAGGGTACACATTTTAAGATACCATTGTTTGAAAGAGC-AATTATCTACGATGTTCG 236 Query 353 TGCACGACCTTACCTTGTAGAG-AGC-ACCACTGGTAGTCATGATCTTCAGATGGTGAAA 410 ||| ||||||||| ||| ||| ||| | ||||| |||||||||||||| | ||||| | Sbjct 237 TGCTCGACCTTACGTTG-AGAATAGCGAA-ACTGGAAGTCATGATCTTCAAACGGTGACA 294 Query 411 ATTGGA-TTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTC-AGATTTACCGAA 468 ||||| ||| ||||||| |||||||||||||| ||||| ||||| | |||||||| ||| Sbjct 295 ATTGGGCTTA-GGGTTCTTACACGTCCCATGGGAGACCGATTGCC-CGAGATTTACAGAA 352 Query 469 CCCTTGG-CGAGAACTACAGCGAAAG-G-GTTCTTCCTTCCATCATCCATGAAACCCTAA 525 | || || | |||| ||| | || || | ||||| |||||||| ||| | ||||| || | Sbjct 353 CACTCGGTC-AGAATTAC-G-GAGAGCGAGTTCTCCCTTCCATTATCAACGAAACACTGA 409 Query 526 AAGCAGTGGTAGCTCAGTACAATGCAAGCCAGCTCATTACCCAGAGAGAAGCTGTGAGCA 585 ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 410 AAGCAGTAGTGGCTCAGTACAATGCAAGCCAGCTCATTACACAGAGAGAAGCTGTGAGTA 469 Query 586 GAGAGATACGCAAGATTCTGACAGAGCGGGCTTCTAACTTTGACATTGCTCTT-GATGAT 644 | ||||||||||| ||| |||||||||| || ||||| || |||||||| || |||||| Sbjct 470 GGGAGATACGCAATATTGTGACAGAGCGAGCATCTAAATTCAACATTGCT-TTAGATGAT 528 Query 645 GTCTCCATCACGA-CTCTGACATTCGGCAAAGAGTTCACCGCAGCTATCGAGGCA-AAAC 702 || |||||||| | | || | ||| |||||||||||||| | ||| || ||| | |||| Sbjct 529 GTTTCCATCACAAAC-CTCAAATTTGGCAAAGAGTTCACTGAAGCAATTGAGA-AGAAAC 586 Query 703 AAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAG-CCGAACAAGAC 761 ||||||| ||||||||||| |||||||| |||||||| || || |||| |||| ||||| Sbjct 587 AAGTTGCGGCTCAGGAAGCAGAACGGGCGAAGTTCATAGTCGA-AAAGGCCGAGGAAGAC 645 Query 762 AGGAGAAGTGCGGTTATCCGTGCGCAGGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAA 821 | || |||||| |||||||| || |||||||||||||| ||||||||||| || || ||| Sbjct 646 AAGAAAAGTGCTGTTATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAGCTCATAGGCCAA 705 Query 822 GCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATT 881 || ||||| |||||| | || ||||| |||||||| |||||||||||||| |||||||| Sbjct 706 GCTATTGCAAACAATGAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATA 765 Query 882 GCACAGACCATTGC-ACAATCTGCTAACAAGGTTTACCTGAGCTCCAACGATCTGTTGCT 940 || |||||||| || | | || ||||||||||||||||| | ||||| ||||| ||||| Sbjct 766 GCTCAGACCATAGCTAGA-TCGGCTAACAAGGTTTACCTAAACTCCAGTGATCTCTTGCT 824 Query 941 TAACCTTCAAGAAATGAACTTGGAGCCTA 969 ||| || |||| ||||||||||||||||| Sbjct 825 TAATCTCCAAGCAATGAACTTGGAGCCTA 853 > Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1 Length=1113 Score = 481 bits (260), Expect = 6e-135 Identities = 614/782 (79%), Gaps = 36/782 (5%) Strand=Plus/Plus Query 183 GTTATTGGTGGGCTCGGTGTCTA-TGCCCTTACTA-A-TAGTCTCTACAATGTCGATGGA 239 |||||||||||||||||| | || || | ||| | | | ||||||||||||||||||| Sbjct 157 GTTATTGGTGGGCTCGGTCTTTACGGCGC-TAC-ACACT-CTCTCTACAATGTCGATGGA 213 Query 240 GGACACCGTGCTGTCATGTTCAACC-GATTAACTGGTATCAAGGAAAAGGTGTACCCAGA 298 || || || || || | || |||| | || ||||||||| || ||||| ||||| || Sbjct 214 GGTCATCGAGCCATCGTCTTTAACCGGCTT-GTTGGTATCAAAGACAAGGTCTACCCTGA 272 Query 299 AGGCACACATTTTATGGTGCCATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCAC- 357 || || || ||||| | || ||||| |||||||||||||||||||||||||||||| Sbjct 273 GGGTACTCACCTTATGATTCCGTGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAA 332 Query 358 GACCTTACCTTGTAGAGAGCACCA-CTGGTAGTCATGATCTTCAGATGGTGAAAATTGGA 416 | ||||| || || ||||| || | | || || | |||||| |||||||| || ||||| Sbjct 333 G-CCTTATCTAGTTGAGAGTAC-ATCCGGGAGCCGTGATCTCCAGATGGTTAAGATTGGG 390 Query 417 -TTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGG 475 || ||||||| || ||||| |||| ||| | || || | ||||| ||||||| Sbjct 391 CTTC-GGGTTCTTACCCGTCCTATGGCCAACCAACTACCAGAGGTATACCGGTCCCTTGG 449 Query 476 CGAGAACTACAGCGAAAGGGTTCTT-CCTTCCATCATCCATGAAACCCTAAAAGCAGTGG 534 ||||| ||| |||| || ||| || ||||| ||||||||||| ||| | ||||| |||| Sbjct 450 TGAGAATTACCGCGAGAGAGTT-TTGCCTTCTATCATCCATGAGACCTTGAAAGCTGTGG 508 Query 535 TAGCTCAGTACAATGCAAGCCAGCTCATTACCCAGAGAGAAG-CTGTGAGCAGAGAGAT- 592 | |||||||||||||| |||||||| |||||||||||||| | | ||||| ||||| || Sbjct 509 TTGCTCAGTACAATGCGAGCCAGCTTATTACCCAGAGAGA-GTCGGTGAGTAGAGAAATC 567 Query 593 ACGCAAGATTCTGACAG-AGCGGGCTTCTAACTT-TGACATTGCTCTTGATGATGTCTCC 650 | | || || || || | | || || | ||||| | ||||||| || |||||||| ||| Sbjct 568 AGGAAA-ATCCTAACTGCA-CGAGCCGCAAACTTCT-ACATTGCACTGGATGATGTGTCC 624 Query 651 ATCAC-GACTCTGACATTCGGCAAAG-AGTTCACCGCAGCTATCGA-GGCAAAACAAGTT 707 ||||| | || ||||||| || |||| ||||||| ||||| || || || ||| || || Sbjct 625 ATCACAGGCT-TGACATTTGG-AAAGGAGTTCACGGCAGCCATAGAAGG-AAAGCAGGTC 681 Query 708 GCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAGCCGAACAAGACAGGAGA 767 || ||||| || || || |||||||||||||||||||| ||||| ||||| |||| | || Sbjct 682 GCAGCTCAAGAGGCCGAGCGGGCTAAGTTCATTGTGGAAAAAGCTGAACAGGACAAGCGA 741 Query 768 AGTGCGGTTATCCGTGC-GCAGGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAAT 826 ||||| ||||| || || | |||||||||| || ||||||||||| || || |||||||| Sbjct 742 AGTGCCGTTATTCGCGCTG-AGGGAGAAGCCAAGAGTGCTCAGCTCATAGGTCAAGCAAT 800 Query 827 TGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATTGCACA 886 || ||||| || || ||| | || ||||| ||||| ||||| || |||||||| ||||| Sbjct 801 CGCAAACAACCAAGCGTTCTTAACGCTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACA 860 Query 887 GACCAT-TGCACAA-TCTGCTAACAAGGTTTACCTGAGCTCCAACGATCTGTTGCTTAAC 944 |||||| | || || || || || ||||||||| ||||||| |||||||| ||||||||| Sbjct 861 GACCATCT-CA-AAGTCGGCAAATAAGGTTTACTTGAGCTCTAACGATCTATTGCTTAAC 918 Query 945 CT 946 || Sbjct 919 CT 920 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47844260835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5