BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03870.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470362 jgi|Araly1|470362|fgenesh2_kg.1__316__AT1G03870.1 1526 0.0
Ahg494579 jgi|Araly1|494579|fgenesh2_kg.8__395__AT5G44130.1 481 5e-135
> Ahg470362 jgi|Araly1|470362|fgenesh2_kg.1__316__AT1G03870.1
Length=1010
Score = 1526 bits (826), Expect = 0.0
Identities = 953/1014 (94%), Gaps = 9/1014 (1%)
Strand=Plus/Plus
Query 16 TAGACATTATTTGTCTACAAACGTTTTGTATTGACTTGGCCATCTCATTCCAACAAGATA 75
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 1 TAGACATTATTTGTCAACAAACGTTTTGTATTGACTTTGCCATCTCATCCCAACTAGATA 60
Query 76 CAACTCATCACTCCAAACA-TTCAACTTCCATATAAACCATTCCCTTCCGATCTCAC-TT 133
|||||||||| | |||||| || |||||||||||||| ||||||||||||||||||| ||
Sbjct 61 CAACTCATCATTTCAAACATTTTAACTTCCATATAAAGCATTCCCTTCCGATCTCACTTT 120
Query 134 TCCAAATCACTCTTCACACTTTAACTAAGCAAACCAATAATGGCTACCACTCGTCTAACT 193
||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 121 TCC-AATCACTCTTCCCACTTCAACTAAGCAAACCAATAATGGCAACCACTCGTCTAACT 179
Query 194 CTAGCTCCTCTCCTCCTCATCGCAGC-CGTACTACTCGCAACCAAGGCAACGGCTCAGCC 252
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 180 CTAGCTCCTCTCCTCCTCATCGC-CCTCGTACTACTCGCAACCAAGGCCACGGCTCAGCC 238
Query 253 GGCAGCCCCCGCTCCAGAG-CCTGCTGGTCCCATCAACCTCACTGCGATCCTCGAAAAAG 311
|||||||| ||||||| | ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 239 AGCAGCCCCTGCTCCAG-GCCCTGCCGGTCCCATCAACCTCACCGCGATCCTCGAAAAAG 297
Query 312 GTGGTCAATTCACTACTTTCATCCATCTTCTAAACATCACTCAAGTCGGTAGTCAAGTGA 371
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 298 GTGGTCAATTCACTACTTTCATCCATCTTCTAAACATCACTCAAGTCGGTAGCCAAGTGA 357
Query 372 ACATTCAAGTCAATAGTTCATCCGAAGGTATGACGGTGTTCGCACCAACAGACAATGCTT 431
|||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 358 ACATTCAAGTTAATAGTTCATCGGAAGGTATGACAGTGTTTGCACCAACAGACAATGCTT 417
Query 432 TTCAAAACCTTAAACCCGGAACCCTAAACCAGTTAAGC-CCTGACGATCAAGTTAAACTC 490
|||||||||||||||||||||| ||||||||||||| | || ||||| ||||| ||||||
Sbjct 418 TTCAAAACCTTAAACCCGGAACTCTAAACCAGTTAA-CTCCAGACGAGCAAGTGAAACTC 476
Query 491 ATTCTCTACCACGTTAGCCCCAAATATTACAGTATGGATGATCTCCTCTCCGTGAGTAAC 550
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 477 ATTCTATACCACGTTAGCCCCAAATTTTACAGTATGGACGATCTCCTCTCCGTGAGTAAC 536
Query 551 CCGGTTAGGACTCAAGCTTCTGGCCGAGACAACGGTGTTTACGGGCTTAACTTCACCGGC 610
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CCGGTCAGGACTCAAGCTTCTGGCCGAGACAACGGTGTTTACGGGCTTAACTTCACCGGT 596
Query 611 CAAACAAACCAAATCAATGTCTCTACTGGTTATGTGGAGACACGTATTAGCAATTCGTTG 670
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 597 CAAACAAACCAAATAAATGTCTCTACTGGTTATGTGGAAACACGTGTTAGCAATGCGTTG 656
Query 671 AGGCAACAACGTCCTCTCGCAGTTTATGTTGTCGACATGGTTTTGTTGCCCGGTGAGATG 730
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 657 AGGCAACAGCGTCCTCTCGCAGTTTATGTTGTCGACATGGTTTTGTTGCCAGGTGAGATG 716
Query 731 TTCGGAGAGCACAAGCTTTCGCCGATTGCTCCTGCCCCTAAATCTAAATCCGGTGGGGTT 790
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 717 TTCGGAGAGCACAAGCTTTCGCCGATTGCTCCTGCACCTAAATCTAAATCCGGTGGGGTT 776
Query 791 ACCGATGACTCCGGCTCCACTAAGAAGGCAGCGTCACCGTCGGATAAGTCAGGCTCCGGT 850
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 777 TCCGATGACTCCGGCTCCACTAAAAAGGCAGCCTCGCCGTCGGATAAGTCAGGCTCCGGT 836
Query 851 GAGAAGAAAGTCGGACTAGGGTTTGGTCTTGGACTTATTGTCTTATGTTTGAAATTTCTC 910
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 837 GAGAAGAAAGTCGGGCTAGGGTTTGGTCTTGGACTTGTTGTCTTGTGTTTGAAATTTCTC 896
Query 911 TTTTGAAAATTTAATAGCAAAGATTTGTTTTGCTTTCTATTGATTTTATCCTGCGATGTG 970
| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 897 TATTGAAAATTTAATATCAATGATTTGTTTTGCTTTCTATTGATTTTATTCTGCGATTTG 956
Query 971 AGGTATAAATATGAAATTTGTTGATTAAGTTCCGTGAAATAAAATGTGAGATTT 1024
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 957 AGGTATAAATATGAAATTTGTTAATTAAGTTCCGTGAAATAAAGTGTGAGATTT 1010
> Ahg494579 jgi|Araly1|494579|fgenesh2_kg.8__395__AT5G44130.1
Length=898
Score = 481 bits (260), Expect = 5e-135
Identities = 559/699 (80%), Gaps = 37/699 (5%)
Strand=Plus/Plus
Query 241 AACGGCTCAGCCGGCAGCCCCCGCTCCAGAG-CCTGCTGGTCCCATCAACCTCACTGCGA 299
||| ||||| || || || || ||||| | | |||||||||||||||||| |||| || |
Sbjct 84 AACCGCTCAACCCGCTGCTCCGGCTCCTG-GCCCTGCTGGTCCCATCAACATCACGGCAA 142
Query 300 TCCTCGAAAAAGGTGGTCAATTCACTACT-TTCATCC-ATCTTCTAAACATC-ACTCAAG 356
|||||||||||||||||||||| |||| || |||| | ||| |||||| | ||||||
Sbjct 143 TCCTCGAAAAAGGTGGTCAATTTGTTACTCTT-ATCCGA-CTTTTAAACA-CAACTCAAA 199
Query 357 TCGGTAGTCAAGTGAACATTCAAGTCAATAGTTCATCCGAAGGTATGACGGTGTTCGCAC 416
|||| | ||| | ||||| ||| |||| |||||||| ||||| ||||| ||||| ||||
Sbjct 200 TCGGAAACCAAATCAACATCCAAATCAACAGTTCATCGGAAGGCATGACCGTGTTGGCAC 259
Query 417 CAACAGACAATGCTTTTCAAAACCTTAAACCCGGAACCCTAAACCAGTTAAGCCCTGACG 476
||||||||||||||||||||||||||||||||||||| |||||| | || ||||| || |
Sbjct 260 CAACAGACAATGCTTTTCAAAACCTTAAACCCGGAACACTAAACAAATTGAGCCCGGAAG 319
Query 477 ATCAAGTTAAACTCATTCTCTACCACGTTAGCCCCAAATAT-TACAGTAT-GGATGATCT 534
| ||||| ||||||||||| ||||| ||||| || |||| | |||| || ||| |||||
Sbjct 320 ACCAAGTCAAACTCATTCTTTACCATGTTAGTCCAAAAT-TCTACAC-ATTGGAAGATCT 377
Query 535 CCTCTCCGTGAGTAACCCGGTTAGGACTCAAGCTTCTGGCCGAGACAAC-GGTG---TTT 590
||| || || ||||||||||| || ||||||||||| || |||||| | |||| |||
Sbjct 378 CCTGTCGGTTAGTAACCCGGTCAGCACTCAAGCTTCAGGTCGAGACG-CTGGTGGGGTTT 436
Query 591 ACGGGCTTAACTTCACCGGCCAAACAAACCAAATCAATGTCTCTACTGGTTAT-GTGGAG 649
|||| |||||||||||||| ||| |||||| ||||||| ||||| ||| || || |||
Sbjct 437 ACGGACTTAACTTCACCGGTCAAGGGAACCAAGTCAATGTATCTACCGGT-ATCGTTGAG 495
Query 650 ACACGTATTAGCAATTCGTTGAGGCAACAACGTCCTCTCGCAGTTTATGTTGTCGACATG 709
|||||| | || | ||| || || ||| |||||||||| || ||||| || || ||||||
Sbjct 496 ACACGTCTCAGTACTTCATTAAGACAAGAACGTCCTCTTGCGGTTTACGTGGTGGACATG 555
Query 710 GTTTTGTTGCCCGGT-GAGATGTTCGGAGAGCACAAGCTTTCGCCGATTG-CTCCTGCC- 766
|| ||||| || || ||||||||||| || | |||| | || || | || | ||| ||
Sbjct 556 GTATTGTTACC-GGAAGAGATGTTCGGGGAACGCAAGATCTCACC-AGTGGCGCCT-CCT 612
Query 767 CCTAAATCTAAATC-CGGTGGGGT-TACCGATGACTCCGGCTCCACTAAGAA-G-G-CAG 821
|||||||||||||| | || || | ||||||| || | |||| ||||||| | | | |
Sbjct 613 CCTAAATCTAAATCTCC-TGATGTCT-CCGATGATTCAGACTCCTCTAAGAAAGCGGCTG 670
Query 822 C---GTCACCGTCGGATAAGTCAGGCTCCGGTGAGAAGAAAGTC-GGACTAGGGTTTGGT 877
| ||||| ||| || ||||| |||||||||||| ||| || ||| | |||||||||
Sbjct 671 CTCCGTCACAGTCAGAGAAGTCTGGCTCCGGTGAGGTGAAT-TCTGGATTCGGGTTTGGT 729
Query 878 CTTGGACTTATTGTCTTATGTTTGAAATTTCTCTTTTGA 916
||||||||| |||| || ||||||||||| |||||||||
Sbjct 730 CTTGGACTTGTTGTGTTGTGTTTGAAATTCCTCTTTTGA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5