BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03880.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470363 jgi|Araly1|470363|fgenesh2_kg.1__317__AT1G03880.1 2549 0.0
> Ahg470363 jgi|Araly1|470363|fgenesh2_kg.1__317__AT1G03880.1
Length=1593
Score = 2549 bits (1380), Expect = 0.0
Identities = 1523/1594 (96%), Gaps = 2/1594 (0%)
Strand=Plus/Plus
Query 19 AATAAAGAGGAAGAAAAATGGGTCGAGTCTCATCTATTATCTCTTTCTCTTTGACACTCT 78
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AATAAAGAGGAAGAAAAATGGGTCGAGTCTCATCTATTGTCTCTTTCTCTTTGACACTCT 60
Query 79 TGATCCTCTTCAATGGCTACACTGCCCAACAGTGGCCCAACGAGTGCCAGCTCGATCAAC 138
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 61 TGATCCTCTTCAATGGCTACACTGCCCAACAATGGCCCAATGAGTGCCAGCTCGATCAAC 120
Query 139 TCAATGCGCTCGAACCATCCCAAATCATCAAGAGCGAGGGTGGTCGCATCGAGGTCTGGG 198
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAATGCGCTCGAACCGTCCCAAATCATCAAGAGCGAGGGTGGTCGCATCGAGGTCTGGG 180
Query 199 ACCACCATGCACCCCAGCTCCGTTGCTCCGGCTTTGCCTTTGAGCGTTTCGTCATTGAGC 258
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 ACCACCATGCACCCCAGCTCCGTTGCTCCGGCTTCGCCTTTGAGCGTTTCGTCATTGAGC 240
Query 259 CTCAGGGTCTTTTCTTGCCCACTTTCTTGAACGCCGGCAAACTCACGTTTGTTGTTCACG 318
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCAGGGTCTTTACTTGCCCACTTTCTTGAACGCCGGCAAACTCACGTTTGTTGTTCACG 300
Query 319 GAAGGGGTCTAATGGGAAGAGTTATTCCGGGATGCGCCGAGACGTTCATGGAGTCACCGG 378
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGGGGTCTAATGGGAAGAGTGATTCCGGGATGCGCCGAGACGTTCATGGAGTCACCGG 360
Query 379 TATTTGGAGAAGGTCAAGGTCAGGGTCAGAGTCAAGGGTTCCGTGACATGCACCAGAAAG 438
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTTGGAGAAGGTCAAGGTCAGGGTCAGAGTCAAGGGTTCCGTGACATGCACCAGAAAG 420
Query 439 TAGAGCACCTACGGTGCGGTGACACCATTGCAACACCATCTGGTGTAGCTCAATGGTTCT 498
|||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||||
Sbjct 421 TAGAGCACCTACGGTGCGGTGACACCATAGCAACACCACCTGGTATGGCTCAATGGTTCT 480
Query 499 ACAACAATGGAAATGAGCCTCTCATTCTTGTTGCAGCCGCGGATCTCGCCAGCAACCAGA 558
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |
Sbjct 481 ACAACAATGGAAATGAGCCTCTCATTCTTGTTGCAGCCGCAGATCTCGCCAACAACAACA 540
Query 559 ACCAGCTTGACCGCAACCTTAGACCATTTTTGATAGCCGGAAACAACCCACAAGGGCAGG 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACCAGCTTGACCGCAACCTTAGACCATTTTTGATAGCCGGAAACAACCCACAAGGGCAGG 600
Query 619 AATGGCTACAAGGCCGAAAGCAACAGAAGCAAAACAACATCTTCAATGGCTTCGCACCTG 678
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 AATGGCTGCAAGGCCGAAAGCAACAGAAACAAAACAACATCTTCAATGGCTTCGCACCTG 660
Query 679 AGATCTTGGCTCAAGCCTTCAAGATCAATGTCGAGACGGCTCAGCAGCTCCAGAACCAGC 738
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 661 AGATCTTGGCTCAAGCTTTCAAGATCAATGTTGAGACGGCTCAGCAGCTCCAGAGCCAGC 720
Query 739 AAGATAACCGTGGCAACATCGTCAAGGTCAACGGACCTTTCGGCGTCATTAGGCCACCCT 798
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 721 AAGACAACCGTGGCAACATCGTCAAGGTCAAAGGACCTTTCGGCGTCATTAGACCACCCT 780
Query 799 TGAGACGCGGCGAAGGCGGCCAACAACCACATGAAATAGCTAATGGTTTAGAGGAGACTT 858
|||||||||||||||||||||| |||||||| |||| | |||| ||| |||| |||||||
Sbjct 781 TGAGACGCGGCGAAGGCGGCCAGCAACCACAGGAAAAAACTAACGGTCTAGAAGAGACTT 840
Query 859 TGTGCACCATGCGATGCACTGAAAACCTCGATGACCCGTCGGATGCTGACGTGTACAAGC 918
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGTGCACAATGCGATGCACCGAAAACCTCGATGACCCGTCGGATGCTGACGTGTACAAGC 900
Query 919 CATCACTCGGATACATTAGCACACTTAACAGCTACAATCTTCCTATCCTCAGACTTCTCC 978
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CATCGCTCGGATACATCAGCACACTTAACAGCTACAATCTTCCTATCCTCAGACTTCTCC 960
Query 979 GCCTTAGCGCTCTTCGTGGCTCCATCCGTAAAAACGCTATGGTGCTACCGCAATGGAACG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCCTTAGCGCTCTTCGTGGCTCCATCCGTAAAAACGCTATGGTGCTACCGCAATGGAACG 1020
Query 1039 TAAACGCAAACGCGGCACTCTACGTGACAAACGGAAAGGCTCATATACAAATGGTGAACG 1098
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TAAACGCAAACGCGGCACTGTACGTGACAAACGGAAAGGCTCATATACAAATGGTGAACG 1080
Query 1099 ACAACGGAGAAAGAGTGTTCGACCAAGAGATCTCCAGCGGACAGTTACTAGTCGTGCCAC 1158
||||||||||||||||||| |||||||||||||| |||||||||||||| || || ||||
Sbjct 1081 ACAACGGAGAAAGAGTGTTTGACCAAGAGATCTCTAGCGGACAGTTACTTGTTGTACCAC 1140
Query 1159 AAGGCTTTTCGGTCATGAAACATGCCATAGGCGAACAGTTCGAGTGGATCGAATTCAAGA 1218
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 AAGGCTTCTCGGTCATGAAACATGCCACAGGCGAACAGTTCGAGTGGATCGAATTCAAGA 1200
Query 1219 CAAACGAAAACGCACAGGTCAACACACTCGCGGGCCGTACCTCAGTCATGAGAGGTTTGC 1278
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAAACGAAAACGCACAGATCAATACACTCGCGGGCCGTACCTCAGTCATGAGAGGTTTGC 1260
Query 1279 CGCTTGAGGTTATAACCAATGGGTACCAGATCTCTCCCGAAGAAGCTAAACGAGTAAAGT 1338
| ||||||||| || |||| ||||| |||||||||||||||||||||| ||| || ||||
Sbjct 1261 CACTTGAGGTTGTATCCAACGGGTATCAGATCTCTCCCGAAGAAGCTAGACGGGTTAAGT 1320
Query 1339 TTAGCACGATTGAGACCACACTGACCCATAGCAGTCCAATGAGCTACGGAAGGCCTAGGG 1398
|||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1321 TTAGCACGATCGAGACCACACTGACTCATAGCAGCCCGATGAGCTACGGAAGGCCTAGGG 1380
Query 1399 CTTGAGGCTTGATGAGCGCGTGGTGGAATAGCGTTTGAATCTAAAGTT-CGGTTTGGTAC 1457
||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||
Sbjct 1381 CTTGAGGCTTGATGAGCTCGCGGTGGAATAGTGTTTGAATCTAAAGTTTCGGTTTGGTAC 1440
Query 1458 GACTTGTAATATGAAATAATAATGTACAAAGAAGTTCTACGCTTAAGGGAACTGTTTTGT 1517
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGTTTGTAATATGAAATAATAATGTACAAAGAAGTTCTACGCTTAAGGGAACTGTTTTGT 1500
Query 1518 TTTGAGCTTTGTATTAGGACGTCTAGTGTACAACAACGAACGTCGTGTATAAGCGATCGT 1577
|||||||||| |||||||||| |||||||||||||||||| || || |||||||||||||
Sbjct 1501 TTTGAGCTTTTTATTAGGACGCCTAGTGTACAACAACGAATGT-GTATATAAGCGATCGT 1559
Query 1578 TGACTCTGCACATGTAACTCTTTCCTGAATAAAA 1611
||||| || ||||||||||||||||| |||||||
Sbjct 1560 TGACTATGTACATGTAACTCTTTCCTTAATAAAA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5