BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03890.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470364 jgi|Araly1|470364|fgenesh2_kg.1__318__AT1G03890.1 2189 0.0
> Ahg470364 jgi|Araly1|470364|fgenesh2_kg.1__318__AT1G03890.1
Length=1465
Score = 2189 bits (1185), Expect = 0.0
Identities = 1377/1469 (94%), Gaps = 16/1469 (1%)
Strand=Plus/Plus
Query 53 ATGCATAAGCTTTTGTTttctcttctctccgtcgtctcactctcatttctcctcttcttc 112
||||||||||||||||||| |||||| ||||||||||||||| || ||||||||| ||||
Sbjct 1 ATGCATAAGCTTTTGTTTTGTCTTCTTTCCGTCGTCTCACTCACACTTCTCCTCTCCTTC 60
Query 113 CATGGCGCCGAGGCACGCCAGCGAGAGGCGCCGTTTCCAAACGCCTGCCATTTCAGCCAA 172
||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 61 CATGGCGGCGAGGCACGCCAGCGAGAGGTGCCGTTTCAAAACGCATGCCATTTCAGCCAA 120
Query 173 ATCAACAGCCTCGCGCCCGCTCAGGCGACGAAGTTCGAAGCCGGTCAGATGGAAGTATGG 232
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 121 ATAAACAGCCTCGCGCCCGCTCAGGCGACCAAGTTTGAAGCCGGTCAGATGGAAGTATGG 180
Query 233 GACCACATGAGCCCTGAGCTCCGATGCGCCGGTGTAACGGTGGCTCGCATCACCCTTCAG 292
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 181 GACCACATGAGCCCTGAGCTCCGATGCGCAGGTGTGACGGTGGCTCGCATCACCCTCCAG 240
Query 293 CCCAATTCCATTTTCTTGCCCGCTTTCTTTAGCCCACCTGCCCTTGCTTACGTTGTCCAA 352
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 241 GCCAATTCCATTTTCTTGCCCGCTTTCTTTAGCCCACCTGCTCTCGCTTACGTTGTCCAA 300
Query 353 GGAGAAGGAGTTATGGGGACGATTGCTTCTGGTTGTCCTGAGACTTTTGCAGAAGTTGAA 412
||||||||||| |||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 301 GGAGAAGGAGTGATGGGGACGATTGCTTCTGGTTGTCCTGAGACTTATGAAGAAATTGAA 360
Query 413 GGATCATCAGGAAGAGGAGGAGGAGGA-GA-CCCGG-GTCGACGTTTTGAGGACATGCAC 469
||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 361 GGATCGTCAGGAAGAGGAGGAGGAGGAGGAGACCGGCGTCGACGTTTTGAGGACATGCAC 420
Query 470 CAGAAGTTGGAGAATTTCCGGCGAGGGGATGTGTTTGCTTCGCTTGCCGGAGTTTCACAG 529
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 CAGAAGTTAGAGAATTTCCGGCGAGGAGATGTGTTTGCTTCGCTTGCCGGAGTTTCACAG 480
Query 530 TGGTGGTACAACCGCGGTGATTCCGATGCCGTCATTGTCATTGTTCTTGATGTCACCAAC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGTGGTACAACCGCGGTGATTCCGATGCCGTCATTGTCATTGTTCTTGATGTCACCAAC 540
Query 590 AGAGAAAACCAGCTTGACCAAGTCCCTAGGATGTTCCAACTAGCCGGGAGCAGAACGCAA 649
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 AGAGAAAACCAGCTTGACCAAGTCCCTAGGATGTTCCAATTAGCCGGGAGCAGAACGCAA 600
Query 650 GAAGAAGAACAACCATTAACGTGGCCATCAGGCAACAACGCTTTCAGCGGTTTCGACCCA 709
||| || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GAACAACAACAACCATTAACCTGGCCATCAGGCAACAATGCTTTCAGCGGTTTCGACCCA 660
Query 710 AACATAATCGCGGAAGCATTCAAAATCAACATCGAGACAGCTAAGCAACTACAAAACCAG 769
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 AACATTATCGCGGAAGCATTCAAAATCAACATCGAGACAGCTAAGCAACTTCAAAACCAG 720
Query 770 AAGGACAACAGAGGAAACATAATCCGAGCAAATGGTCCTCTCCATTTCGTCATCCCACCG 829
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 AAGGACAACAGAGGAAACATAATCCGAGCAAATGGTCCTCTCCATTTCGTCACCCCACCG 780
Query 830 CCTCGTGAATGGCAGCAAGATGGCATTGCTAATGGCATCGAAGAGACTTATTGCACGGCT 889
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 CCACGGGAATGGCAGCAAGATGGCATTGCTAATGGCATCGAAGAGACGTATTGCACGGCT 840
Query 890 AAGATTCATGAGAATATCGATGATCCAGAACGGTCTGACCATTTTAGCACACGAGCCGGA 949
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 AAGATTCATGAGAATATCGATGATCCAGAACGGACTGACCATTTTAGCACACGAGCCGGA 900
Query 950 AGAATCAGCACTCTTAACAGCCTTAATCTCCCTGTTCTACGTCTAGTCAGACTTAACGCC 1009
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 901 AGAATCAGTACTCTTAACAGTCTTAATCTCCCCGTTCTACGCCTAGTCAGACTTAACGCC 960
Query 1010 CTTAGAGGTTATCTCTACAGCGGAGGAATGGTGTTGCCACAATGGACGGCAAACGCGCAC 1069
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 961 CTTAGAGGTTATCTCTACAGCGGGGGAATGGTGTTGCCACAATGGACCGCAAACGCCCAC 1020
Query 1070 ACGGTGCTATACGTCACAGGAGGTCAAGCCAAGATACAAGTGGTGGACGACAATGGTCAG 1129
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACGGTGCTGTATGTCACAGGCGGTCAAGCCAAGATACAAGTGGTGGACGACAATGGTCAG 1080
Query 1130 TCGGTGTTCAATGAGCAAGTGGGACAAGGCCAAAT-CATTGTGATTCCACAAGGCTTTGC 1188
|| |||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||
Sbjct 1081 TCTGTGTTCAATGAGCAAGTGGGACAAGGCCAAGTAC-TTGTGATTCCACAGGGCTTTGC 1139
Query 1189 AGTTTCAAAAACGGCTGGTGAAACGGGTTTCGAGTGGATATCATTCAAGACAAACGATAA 1248
||| || |||| || ||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 1140 AGTATCGAAAATTGCCGGTGAAACGGGTTTCGAATGGATATCGTTCAAGACAAACGATCA 1199
Query 1249 CGCTTACATTAACACACTGAGCGGCCAAACATCGTACTTGAGAGCAGTTCCAGTGGATGT 1308
|||||||||||||||||| |||||||||||||||||||||||||| || || || |||||
Sbjct 1200 CGCTTACATTAACACACTCAGCGGCCAAACATCGTACTTGAGAGCGGTCCCTGTCGATGT 1259
Query 1309 GATCAAAGCGTCATATGGAGTGAACGAGGAAGAAGCCAAGAGGATCAAGTTTAGTCAGCA 1368
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 AATCAAAGCATCGTATGGAGTGAACGAGGAAGAAGCGAAGAGGATCAAGTTTAGTCAGCA 1319
Query 1369 AGAGACCATGTTGTCTATGACACCAAGCTCTTCTTCTTAA---GCTCTTTAATT--GCTT 1423
|||||| ||||| |||||||||||||||||||||||||| ||| ||| || ||||
Sbjct 1320 AGAGACTTTGTTGGCTATGACACCAAGCTCTTCTTCTTAATTAGCTTTTTGCTTTTGCTT 1379
Query 1424 CCTTTAATGtttttttAGATTTTCCAGTCACTGAAATAAATAAAGATGAGACT---AATA 1480
||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1380 CCTTTGATGTTTTTT-AGATTTTCCAGTCAATGAAATAAATAAAGATGAGACTTCTAATA 1438
Query 1481 ACCAACTTTTCACAAAGCTTCAATAACAA 1509
||||||||| ||||||||||||||||||
Sbjct 1439 ACCAACTTT--ACAAAGCTTCAATAACAA 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5