BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03900.1
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311479 jgi|Araly1|311479|fgenesh1_pm.C_scaffold_1000259 830 0.0
Ahg928580 jgi|Araly1|928580|scaffold_301037.1 124 1e-27
> Ahg311479 jgi|Araly1|311479|fgenesh1_pm.C_scaffold_1000259
Length=1809
Score = 830 bits (449), Expect = 0.0
Identities = 469/479 (98%), Gaps = 0/479 (0%)
Strand=Plus/Plus
Query 114 ATGTCGTTCGAGGAAGAAGAAGAGGAGGAAACATTCGAGCATACACTTCTCGTGGTGCGT 173
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTTCGAGGAAGAAGAAGAGGAGGAGACATTCGAGCATACACTTCTCGTGGTGCGT 60
Query 174 GAGGTCTCCGTTTACAAGATCCCGCCGCGAACCACATCCGGCGGATACAAGTGCGGCGAA 233
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGGTTTCCGTTTACAAGATCCCGCCGCGAACCACATCCGGCGGATACAAGTGCGGCGAA 120
Query 234 TGGCTTCAATCCGATAAGATCTGGTCTGGTAGACTCCGCGTCGTATCGTGCAAGGATCGA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGCTTCAATCCGATAAGATCTGGTCTGGTAGACTCCGCGTCGTATCGTGCAAGGATCGA 180
Query 294 TGCGAGATCCGCCTCGAGGATTCGAATTCCGGTGATCTTTTCGCAGCTTGTTTTGTGGAT 353
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 181 TGCGAGATCCGCCTCGAGGATTCGAATTCCGGCGATCTTTTCGCGGCTTGTTTCGTGGAT 240
Query 354 CCTGGACGTAGAGAGAACTCTGTAGAGCCGTCTCTCGATTCGTCTAGGTATTTCGTTCTC 413
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTGAACGGAGAGAGAACTCTGTCGAGCCGTCTCTCGATTCGTCTAGGTATTTCGTTCTC 300
Query 414 AGGATCGATGACGGGAGAGGGAAGTATGCGTTTATCGGGCTAGGATTCGCTGAGAGGAAC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGATCGATGACGGGAGAGGGAAGTATGCGTTTATCGGGCTAGGATTCGCTGAGAGGAAC 360
Query 474 GAAGCGTTTGATTTCAATGTTGCGTTATCGGATCATGAAAAGTACGTTAGGAGGGAGAAA 533
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGCGTTTGATTTCAATGTCGCGTTATCGGATCATGAAAAGTACGTTAGGAGGGAGAAA 420
Query 534 GAGAAGGAGACAGGGGAAACGAGTGAGAGCGATAATCATATTGATATCCATCCTGCCGT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GAGAAGGAGACAGGGGAAACGAGTGAGAGCGATAATCATATTGATATCCATCCCGCCGT 479
Score = 333 bits (180), Expect = 2e-90
Identities = 196/204 (96%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 612 GGTGAAACCATAAGAATCAACGTGAAGCCGAAACCAACAACAAATGGCACTGGGATGCTC 671
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GGTGAAACTATAAGAATCAACGTGAAGCCGAAACCAACAACAAATGGCACTGGGATGCTC 678
Query 672 TCAGCTGCTCTTTCAGGAACGGGGAAGCCAAAACCTCTAGCACTTGCCCCACCCCCCAAA 731
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 679 TCAGCTGCTCTTTCAGGAACCGGGAAGCCAAAACCTCTAGCACTTGCCCCACCTCCCAAA 738
Query 732 GCTGCCGGAGTAACCAGGTCTCCTTTACCTCCTCCTCCAAACGATCCCGTCGCTTCAAGG 791
||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 739 GCTGCTGGAATAACCAGGTCTCCTTTACCGCCTCCTCCAAATGATCCTGTCGCTTCAAGG 798
Query 792 ATTGCATCTGATGGCTGCAAGGAA 815
||||||||||||||||||||||||
Sbjct 799 ATTGCATCTGATGGCTGCAAGGAA 822
> Ahg928580 jgi|Araly1|928580|scaffold_301037.1
Length=301
Score = 124 bits (67), Expect = 1e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 733 CTGCCGGAGTAACCAGGTCTCCTTTACCTCCTCCTCCAAACGATCCCGTCGCTTCAAGGA 792
|||| ||| |||| |||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 149 CTGCTGGAATAACTAGGTCTCC-TTACCGCCTCCTCCAAACGATCCTGTCGCTTCAAGGA 207
Query 793 TTGCATCTGATGGCTGCAAGGAATCA 818
||||||||||||||||||||||||||
Sbjct 208 TTGCATCTGATGGCTGCAAGGAATCA 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5