BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03905.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311479 jgi|Araly1|311479|fgenesh1_pm.C_scaffold_1000259 1441 0.0
Ahg494585 jgi|Araly1|494585|fgenesh2_kg.8__401__AT5G44110.1 785 0.0
> Ahg311479 jgi|Araly1|311479|fgenesh1_pm.C_scaffold_1000259
Length=1809
Score = 1441 bits (780), Expect = 0.0
Identities = 845/876 (96%), Gaps = 6/876 (1%)
Strand=Plus/Plus
Query 76 AAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTATG 135
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 940 AAAATGGCGGAGAAAGATGCGACGGCGAGCGGCGATGACGCCATTAGAGTTAGCGGTATG 999
Query 136 CAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGCT 195
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1000 CAGTTCGCATACGAAGTTGAGGATCCTATATTCTTCGACTTCAACCTCGATCTTCCAGCT 1059
Query 196 GGTTCTCGCTGTCTTCTGGTTGGTGCCAATGGATCTGGCAAGACAACCTTATTGAAGATT 255
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1060 GGTTCTCGCTGCCTTCTGGTTGGTGCCAATGGATCTGGCAAGACAACCTTACTGAAGATT 1119
Query 256 CTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCT 315
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1120 CTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTTCAAGTTCTTAGCCGCTCAGCT 1179
Query 316 TTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGT 375
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1180 TTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTATCTTGGAGGATCTTGGAGT 1239
Query 376 AAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATG 435
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AAAACCGTTGGTTCAGCTGGCGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATG 1299
Query 436 ATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGAT 495
|||||| | | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1300 ATATTT---G--G-AGGAACTGATCCCGTGAGAAGAGAAAAGTTGATTGATCTTCTTGAT 1353
Query 496 ATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATA 555
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1354 ATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGAGTGCAGATA 1413
Query 556 TGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTA 615
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1414 TGCATGGGACTCTTACATCCATTCAAGGTATTATTACTCGACGAGGTCACTGTTGACCTA 1473
Query 616 GACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGA 675
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1474 GACGTCGTTGCAAGGATGGATTTGCTGGAATTTTTCAAAGAAGAATGTGATCAGAGAGGA 1533
Query 676 GCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTG 735
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 GCTACAATTGTATATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTG 1593
Query 736 GCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTG 795
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1594 GCCTATATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGACGAGCTG 1653
Query 796 AAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTC 855
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1654 AAAACTTCACCCAACCTCCTTTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTC 1713
Query 856 GTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCT 915
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1714 GTGAAGAAAAAGAAGAAGCCTGTGGCACCATGGAAACCATCTCCATTCGATAACTCTCCT 1773
Query 916 TTTAGATCATCGAGACACATGGCTTATTACCGATGA 951
||||||||||| ||||||||||||||||||||||||
Sbjct 1774 TTTAGATCATCAAGACACATGGCTTATTACCGATGA 1809
> Ahg494585 jgi|Araly1|494585|fgenesh2_kg.8__401__AT5G44110.1
Length=1025
Score = 785 bits (425), Expect = 0.0
Identities = 681/805 (85%), Gaps = 15/805 (2%)
Strand=Plus/Plus
Query 75 AAAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTAT 134
|||||||||||||||| |||||| |||| || || || || ||||| ||||| || ||
Sbjct 33 AAAAATGGCGGAGAAAAATGCGAATGCGATTGACGGTG-CG--ATTAGGGTTAGTGGAAT 89
Query 135 GCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGC 194
||| || | ||||| ||| | ||||| || |||||||| || |||||||||||||| ||
Sbjct 90 GCAGTTTTCTTACGATGTTCAAGATCCTATTTTCTTCGATTTTAACCTCGATCTTCCCGC 149
Query 195 TGGTTCTCGCTGTCTTC-TGGTTGGTGCCAATGGATCTGGCAAGACAACCTTATTGAAGA 253
||| ||||| || | || |||||||||||||||||||||| || || || ||||||||||
Sbjct 150 TGGATCTCGTTG-CCTCTTGGTTGGTGCCAATGGATCTGGAAAAACTACATTATTGAAGA 208
Query 254 TTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAG-CCGCTCG 312
|| ||||||||||||||||||| ||||||||||| || ||||||| | || | |||||
Sbjct 209 TTTTGGCTGGAAAGCATATGGTTGGAGGAAAGAATGTGGTACAAG-TGTTGGATCGCTCA 267
Query 313 GC-TTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATG 371
|| ||| |||||||| | |||||||| |||||||| |||||||||||||||||||||||
Sbjct 268 GCATTT-CATGATACAGAGCTTGTTTGTAGTGGTGATTTGTCTTACCTTGGAGGATCATG 326
Query 372 GAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACA 431
||||||||| | |||||| ||||| ||| |||| || || ||||| ||||||||||||||
Sbjct 327 GAGTAAAACAGCTGGTTCTGCTGGTGAGATTCCACTACAAGGAGACTTCTCAGCAGAACA 386
Query 432 TATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCT 491
||||||||||||||||||||| | |||||| ||||||||||| || |||||||||||||
Sbjct 387 TATGATATTTGGAGTTGAAGGGATTGATCCTGTGAGAAGAGAGAAGTTGATTGATCTTCT 446
Query 492 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCA 551
||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 447 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAGACGTCGAGTGCA 506
Query 552 GATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGA 611
||||| ||||| |||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 507 AATATGCATGGGTCTCTTACATCCATTCAAGGTGTTACTACTGGATGAGGTTACTGTTGA 566
Query 612 CCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAG 671
||| || || ||||| ||||||||| || |||||||||| |||||||||||||| |||||
Sbjct 567 CCTCGATGTTGTTGCGAGGATGGATCTGTTGGAATTCTTTAAAGAAGAATGTGAACAGAG 626
Query 672 AGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACA 731
|||||||||||| || ||||||||||| || |||||||| |||||||||||||| | ||
Sbjct 627 AGGAGCTACAATTGTATATGCAACTCATATTTTCGACGGTCTAGAGACATGGGCTAGTCA 686
Query 732 TTTGGCCTACATTCA-GGACGGTGAGCTGAATCGTTTAT-CGAAAAT-GACAGATATTGA 788
|||||| |||||| | ||| || |||||||| | | | | ||| | || || || |
Sbjct 687 TTTGGCTTACATTAATGGA-GGAGAGCTGAAAC-TCTCGGCCAAATTAGAT-GAGATCAA 743
Query 789 GGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAAT 848
||| || ||||| || || || || ||||| || || |||||||||||||| |||||||
Sbjct 744 GGATCTCAAAACCTCTCCAAATCTGCTCTCTGTTGTTGAATCTTGGCTCCGGTCTGAAAC 803
Query 849 CAAACTCGTGAAGAAGAAGAAGAAG 873
|||| ||| |||||||| |||||||
Sbjct 804 CAAAGTCGAGAAGAAGACGAAGAAG 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5