BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03910.2
Length=2466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333714 jgi|Araly1|333714|fgenesh1_pg.C_scaffold_1000279 2084 0.0
Ahg934316 jgi|Araly1|934316|scaffold_402304.1 573 2e-162
> Ahg333714 jgi|Araly1|333714|fgenesh1_pg.C_scaffold_1000279
Length=2016
Score = 2084 bits (1128), Expect = 0.0
Identities = 1209/1249 (97%), Gaps = 2/1249 (0%)
Strand=Plus/Plus
Query 1013 GGACTTACTGTTAAAGATATGGAAGAGCTTCGCGATGATATCAAGATGTATCTGGATTTG 1072
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGACTCACTGTTAAAGATATGGAAGAGCTTCGCGATGATATCAAGATGTATCTGGATTTG 828
Query 1073 GATCGGGCAACTCCAACACGTGTACAATATTGGGAGGCGCTTATTGTGGTATGCGATTGG 1132
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 829 GATCGGGCAACTCCAACACGCGTACAATATTGGGAGGCGCTTATTGTGGTATGCGATTGG 888
Query 1133 GAGTTAGCTGAAGCTCGTAAGAGGGATGCCCTTGATCGAGCTAGAGTTAGAGGGGAGGAG 1192
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGTTAGCTGAAGCTCGTAAAAGGGATGCCCTTGATCGAGCTAGAGTTAGAGGGGAGGAA 948
Query 1193 CCTCCTGCAGAATTGCTTGCTCAAGAGAGGGGACTACACGCTGGTGTTGAAGCTGATGTG 1252
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 949 CCTCCTGCAGAATTGCTTGCTCAAGAGAGGGGATTACACGCTGGTGTTGAAGCTGATGTG 1008
Query 1253 AGAAAACTTCTCGATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAA 1312
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AGAAAACTTCTTGATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAA 1068
Query 1313 TCGCAGCTGCGTTCTGGGTCTGCGAAAGTAGTAGAGTATTGGGAAGCAGTTCTTAAACGC 1372
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1069 TCGCAGCTGCGTTCTGGGTCAGCAAAAGTGGTAGAGTATTGGGAAGCAGTTCTTAAACGC 1128
Query 1373 CTCGAAATATACAAGGCAAAGGCTTGCTTGAAGGAAATACACGCTGAGATGCTGA-GACG 1431
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 1129 CTCGAAATATACAAGGCGAAGGCTTGCTTGAAGGAAATACACGCTGAGATGCTGAGGA-G 1187
Query 1432 TCATCTACATCGCCTCGAGCAACTTTCAGAGGGTGAAGATGATGTAGAAGTTAATCCTGG 1491
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 1188 TCATCTACATCGCCTCGAGCAACTTTCAGAGGGTGAAGAAGATTTAGAAGTTAATCATGG 1247
Query 1492 CTTAACACGTGTGGTGGAAGAAAATGAGGAGGAGATAAATGATACGAATCTTTCAGATGC 1551
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1248 CTTAACACGTGTGGTGGAAGAAAATGAGGAGGAGATAAATGGTATGAATCATTCAGATGC 1307
Query 1552 TGAAGAAGCATTTTCTCCAGAGCCTGTTGCGGAGGAAGAAGAAGCTGATGAGGCAGCAGA 1611
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1308 TGAAGAAGCATTTTCTCCAGAGCCTATTGCAGAGGAAGAAGAAGCTGATGAGGCAGCAGA 1367
Query 1612 AGCGGCTGGTTCGTTTTCGCCAGAGCTCATGCACGGTGATGATCGTGAAGAAGCAATCGA 1671
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1368 AGCGGCTGGTTCGTTTTCGCCAGAGCTCATGCACGGTGATGATCGTGAAGCAGCAATCGA 1427
Query 1672 TCCCGAGGAAGACAAGAAGCTACTGCAAATGAAACGGATGATTGTGCTGGAGAAACAGAA 1731
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 1428 TCCCGAGGAAGACAAGAAGCTACTGGAAATGAAACGGATGGTTGTGTTGGAGAAACAGAA 1487
Query 1732 GAAACGGCTTAAAGAAGCTATGGACTCAAAACCAGCACCTGTAGAAGATAACTTGGAGCT 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GAAACGGCTTAAAGAAGCTATGGACTCAAAACCAGCACCTGTAGAAGATAACTTGGAGCT 1547
Query 1792 TAAAGCAATGAAAGCAATGGGAGCAATGGAAGAAGGTGATGCCATATTTGGCTCTAATGC 1851
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1548 TAAAGCAATGAAAGCAATGGGAGCAATGGAGGAAGGTGATGCCATATTTGGCTCTAATGC 1607
Query 1852 TGAAGTGAACCTCGATTCCGAGGTATACTGGTGGCATGACAAGTACCGGCCAAGAAAACC 1911
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TGAAGTGAACCTCGATTCTGAGGTATACTGGTGGCATGACAAGTACCGGCCAAGAAAACC 1667
Query 1912 GAAGTATTTCAATCGGGTTCACACAGGTTACGAATGGAATAAGTATAACCAAACTCACTA 1971
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1668 AAAGTATTTCAATCGGGTTCACACGGGTTACGAATGGAATAAGTATAACCAAACTCACTA 1727
Query 1972 TGACCACGATAATCCGCCTCCAAAAATCGTTCAAGGATACAAGTTTAACATCTTCTACCC 2031
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1728 TGACCACGATAACCCGCCTCCAAAAATCGTTCAAGGGTACAAGTTTAACATCTTCTACCC 1787
Query 2032 GGATTTAGTAGACAAAATTAAGGCTCCCATTTACACTATCGAAAAAGATGGGACAAGTGC 2091
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1788 GGATTTAGTAGACAAGATTAAGGCTCCCATTTACACTATCGAAAAAGATGGTACAAGCGC 1847
Query 2092 TGAAACGTGTATGATCCGGTTCCATGCTGGTCCACCTTATGAAGACATTGCGTTCCGGAT 2151
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1848 TGAAACTTGTATGATCCGGTTCCATGCTGGTCCGCCTTATGAAGACATTGCGTTCCGGAT 1907
Query 2152 TGTGAATAAAGAATGGGAGTATTCTCACAAGAAAGGTTTCAAATGCACGTTTGAGCGTGG 2211
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1908 TGTGAATAAAGAATGGGAATATTCTCATAAGAAAGGTTTCAAATGCACGTTTGAGCGGGG 1967
Query 2212 GATTCTGCATTTGTACTTCAACTTTAAACGACATAGGTACAGGCGATAA 2260
|||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1968 GATTCTACACTTGTACTTCAACTTTAAACGACATAGGTACAGGCGATAA 2016
Score = 1171 bits (634), Expect = 0.0
Identities = 730/775 (94%), Gaps = 11/775 (1%)
Strand=Plus/Plus
Query 110 ATGGGTTCTCATGGTAAGGGTAAGAGAGATAGAAGTGGAAGGCAGAAGAAGCGGAGAGAT 169
|||| ||||||||||||| ||||||||| |||| |||| || ||||||||||||||||||
Sbjct 1 ATGGCTTCTCATGGTAAGAGTAAGAGAGGTAGAGGTGGGAGTCAGAAGAAGCGGAGAGAT 60
Query 170 GAATCCGAGTCTGGGTCTGAGTCCGAGTCTTACACTTCTGACTCTGATGGCTCAGATGAT 229
|||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 61 GAATCCGA------GTCTGAGTCCGAGTCTTACACTTCTGACTCGGATGGCTCTGATGAT 114
Query 230 TTGTCGCCGCCCAGGAGTTCCAGGAGGAAGAAAGG---TAGCAGCAGTCGTCGGACTCGA 286
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 115 TTCTCGCCGCCCAGGAGTTCCAGGAGGAAGAAAGGCACCACCAGCAGTCGTCGGACTCGA 174
Query 287 CGCCGTAGCTCAAGTGATGATTCCAGTGACAGTGATGGTGGACGGAAGAGTAAGAAGAGA 346
|||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 175 CGCCATAGCTCAAGTGATGATTCCAGTGACAGCGATGGTGGACGCAAGAGTAAGAAGAGA 234
Query 347 TCTTCATCTAAGGAT-TACTCGGAGGAAAAAGTTACGGAGTATATGTCTAAAAAAGCTCA 405
||||||||||||||| | ||| ||||||||| | | ||| ||||||||||||||||||||
Sbjct 235 TCTTCATCTAAGGATGT-CTCAGAGGAAAAACTCAAGGAATATATGTCTAAAAAAGCTCA 293
Query 406 GAAGAAGGCATTACGTGCAGCAAAGAAACTGAAGACGCAGTCAGTGTCAGGGTACTCCAA 465
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 294 GAAGAAGGCATTACGTGCAGCAAAGAAACTGAAGACGCAGTCAGTGTCAGGCTACTCCAA 353
Query 466 TGATTCAAACCCATTTGGTGATTCAAATCTCACTGAGACATTTGTGTGGCGGAAGAAGAT 525
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 354 CGATTCAAACCCATTTGGGGATTCGAATCTCACTGAGACATTTGTGTGGCGGAAGAAGAT 413
Query 526 TGAAAAAGATGTTCATCGAGGAGTACCGCTGGAAGAATTTTCCGTTAAAGCTgagaagag 585
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGAAAAAGATGTTCACCGTGGAGTACCGCTGGAAGAATTTTCCGTTAAAGCTGAGAAGAG 473
Query 586 aagacaccgggaaaggatgacagaggttgaaaaggttaagaagaggagagaagagagagC 645
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AAGACACAGGGAAAGGATGACAGAGGTTGAAAAGGTTAAGAAGAGGAGAGAAGAGAGAGC 533
Query 646 AGTGGAGAAAGCTCGACATGAAGAAGAAATGGCATTGTTAGCTAGAGAACGTGCTCGGGC 705
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 534 AGTGGAGAAAGCTCGACATGAGGAAGAAATGGCATTATTAGCTAGAGAACGTGCTCGAGC 593
Query 706 TGAGTTCCATGATTGGGAGAAGAAAGAGGAAGAGTTCCATTTCGATCAAAGCAAGGTGAG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGAGTTCCATGATTGGGAGAAGAAAGAGGAAGAGTTCCATTTCGATCAAAGCAAGGTGAG 653
Query 766 GTCAGAGATTAGATTACGTGAAGGTCGACTGAAGCCAATCGACGTCCTCTGCAAGCACTT 825
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 654 GTCAGAGATTAGATTACGTGAAGGCCGACTTAAGCCAATCGACGTGCTCTGCAAGCACTT 713
Query 826 GGATGGTTCAGATGATTTGGATATCGAGCTCAGTGAACCGTACATGGTTTTCAAG 880
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 714 GGATGGTTCAGATGATCTGGATATCGAGCTCAGTGAACCCTACATGGTTTTCAAG 768
> Ahg934316 jgi|Araly1|934316|scaffold_402304.1
Length=1686
Score = 573 bits (310), Expect = 2e-162
Identities = 445/510 (87%), Gaps = 9/510 (2%)
Strand=Plus/Plus
Query 1774 AGAAGATAACTTGGAGCTTAAAGCAATGAAAGCAATGGGAGCAATGGAAGAAGGTGATGC 1833
||||||||||||||||||||| ||||||||| ||||| ||| |||||| |||||| |||
Sbjct 1183 AGAAGATAACTTGGAGCTTAAGGCAATGAAAACAATGAGAGAAATGGAGGAAGGTTATGT 1242
Query 1834 CATATTTGGCTCTAATGCTGAAGTGAACCTCGATTCCGAGGTATACTGGTGGCATGACAA 1893
|||||||||||||||||||||||||||| ||| || |||||| | ||||||||||||
Sbjct 1243 TGTATTTGGCTCTAATGCTGAAGTGAACCTTGATCCCAAGGTATGCAAGTGGCATGACAA 1302
Query 1894 GTACCGGCC-AAGAAAACCGAAGTATTTCAATCGGGTTCACACAGGTTACGAATGGAATA 1952
||||||||| || |||||| ||||||||||| || |||||||| |||||||| |||||||
Sbjct 1303 GTACCGGCCTAA-AAAACCCAAGTATTTCAACCGAGTTCACACGGGTTACGAGTGGAATA 1361
Query 1953 AGTATAACCAAACTCACTATGACCACGATAATCCGCCTCCAAAAATCGTTCAAGGATACA 2012
||||||||||||| || ||||| ||| |||| |||||||||||| | |||||||| ||||
Sbjct 1362 AGTATAACCAAACACATTATGATCACCATAACCCGCCTCCAAAATTTGTTCAAGGGTACA 1421
Query 2013 AGTTTAACATCTTCTACCCGGATTTAGTAGACAAAATT-AAGGCTCCCATTTACACTATC 2071
|||||||||||||||||||||||||||||||| | | | ||| ||||| || ||||||
Sbjct 1422 AGTTTAACATCTTCTACCCGGATTTAGTAGACGACACTGAAGT-TCCCACTTGCACTATA 1480
Query 2072 GAAAAAGATGGGACAAG-TGCTGAAACGTGTATGATCCGGTTCCATGCTGGTCCACCTTA 2130
||||||||||||||||| | ||||||| ||||| |||||||| | |||||||| |||||
Sbjct 1481 GAAAAAGATGGGACAAGCT-CTGAAACTTGTATAATCCGGTTTGAAGCTGGTCCGCCTTA 1539
Query 2131 TGAAGACATTGCGTTCCGGATTGTGAATAAAGAATGGGAGTATTCTCACAAGAAAGGTTT 2190
|||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||
Sbjct 1540 TGAAGACATTGCGTTCCGGATTGTGAATAAGGAATGGGAGAAATCTCGTAAGAAAGGTTA 1599
Query 2191 CAAATGCACGTTTGAGCGTGGGATTCTGCATTTGTACTTCAACTTTAAACGACATAGGTA 2250
||||| |||||| |||| ||||||||| ||||||||| ||||||||||||| | ||||
Sbjct 1600 CAAATACACGTTCGAGCATGGGATTCTACATTTGTAC---AACTTTAAACGACTTCGGTA 1656
Query 2251 CAGGCGATAACCTTATCGGAGTTTGGCTGG 2280
|||||||||| || |||||||||||||||
Sbjct 1657 CAGGCGATAAACTGGTCGGAGTTTGGCTGG 1686
Score = 302 bits (163), Expect = 1e-80
Identities = 201/219 (92%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 1205 TTGCTTGCTCAAGAGAGGGGACTACACGCTGGTGTTGAAGCTGATGTGAGAAAACTTCTC 1264
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 768 TTGC-TGCTCAAGAAAGGGGACTACACGCTGGTGTTGAAGCTGATGTGAGAGAACTTCTT 826
Query 1265 GATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAATCGCAGCTGCGT 1324
||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 827 GATGGGAAGACCCACGCGGAGCTTGTACAACTGCAGTTTGACATCGAGTCGCAGCTGCGA 886
Query 1325 TCTGG-GTCTGCGAAAGTAGTAGAGTATTGGGAAGCAGTTCTTAAACGCCTCGAAATATA 1383
||||| | | || |||||||| |||||||||||||| |||||||||||| || | |||||
Sbjct 887 TCTGGAG-CAGCCAAAGTAGTGGAGTATTGGGAAGCGGTTCTTAAACGCATCCATATATA 945
Query 1384 CAAGGCAAAGGCTTGCTTGAAGGAAATACACGCTGAGAT 1422
|||||||||||||||||||||||||||| ||||||||||
Sbjct 946 CAAGGCAAAGGCTTGCTTGAAGGAAATAAACGCTGAGAT 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92940197800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5