BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03910.2 Length=2466 Score E Sequences producing significant alignments: (Bits) Value Ahg333714 jgi|Araly1|333714|fgenesh1_pg.C_scaffold_1000279 2084 0.0 Ahg934316 jgi|Araly1|934316|scaffold_402304.1 573 2e-162 > Ahg333714 jgi|Araly1|333714|fgenesh1_pg.C_scaffold_1000279 Length=2016 Score = 2084 bits (1128), Expect = 0.0 Identities = 1209/1249 (97%), Gaps = 2/1249 (0%) Strand=Plus/Plus Query 1013 GGACTTACTGTTAAAGATATGGAAGAGCTTCGCGATGATATCAAGATGTATCTGGATTTG 1072 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GGACTCACTGTTAAAGATATGGAAGAGCTTCGCGATGATATCAAGATGTATCTGGATTTG 828 Query 1073 GATCGGGCAACTCCAACACGTGTACAATATTGGGAGGCGCTTATTGTGGTATGCGATTGG 1132 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 829 GATCGGGCAACTCCAACACGCGTACAATATTGGGAGGCGCTTATTGTGGTATGCGATTGG 888 Query 1133 GAGTTAGCTGAAGCTCGTAAGAGGGATGCCCTTGATCGAGCTAGAGTTAGAGGGGAGGAG 1192 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 889 GAGTTAGCTGAAGCTCGTAAAAGGGATGCCCTTGATCGAGCTAGAGTTAGAGGGGAGGAA 948 Query 1193 CCTCCTGCAGAATTGCTTGCTCAAGAGAGGGGACTACACGCTGGTGTTGAAGCTGATGTG 1252 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 949 CCTCCTGCAGAATTGCTTGCTCAAGAGAGGGGATTACACGCTGGTGTTGAAGCTGATGTG 1008 Query 1253 AGAAAACTTCTCGATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAA 1312 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 AGAAAACTTCTTGATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAA 1068 Query 1313 TCGCAGCTGCGTTCTGGGTCTGCGAAAGTAGTAGAGTATTGGGAAGCAGTTCTTAAACGC 1372 |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 1069 TCGCAGCTGCGTTCTGGGTCAGCAAAAGTGGTAGAGTATTGGGAAGCAGTTCTTAAACGC 1128 Query 1373 CTCGAAATATACAAGGCAAAGGCTTGCTTGAAGGAAATACACGCTGAGATGCTGA-GACG 1431 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 1129 CTCGAAATATACAAGGCGAAGGCTTGCTTGAAGGAAATACACGCTGAGATGCTGAGGA-G 1187 Query 1432 TCATCTACATCGCCTCGAGCAACTTTCAGAGGGTGAAGATGATGTAGAAGTTAATCCTGG 1491 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 1188 TCATCTACATCGCCTCGAGCAACTTTCAGAGGGTGAAGAAGATTTAGAAGTTAATCATGG 1247 Query 1492 CTTAACACGTGTGGTGGAAGAAAATGAGGAGGAGATAAATGATACGAATCTTTCAGATGC 1551 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 1248 CTTAACACGTGTGGTGGAAGAAAATGAGGAGGAGATAAATGGTATGAATCATTCAGATGC 1307 Query 1552 TGAAGAAGCATTTTCTCCAGAGCCTGTTGCGGAGGAAGAAGAAGCTGATGAGGCAGCAGA 1611 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1308 TGAAGAAGCATTTTCTCCAGAGCCTATTGCAGAGGAAGAAGAAGCTGATGAGGCAGCAGA 1367 Query 1612 AGCGGCTGGTTCGTTTTCGCCAGAGCTCATGCACGGTGATGATCGTGAAGAAGCAATCGA 1671 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1368 AGCGGCTGGTTCGTTTTCGCCAGAGCTCATGCACGGTGATGATCGTGAAGCAGCAATCGA 1427 Query 1672 TCCCGAGGAAGACAAGAAGCTACTGCAAATGAAACGGATGATTGTGCTGGAGAAACAGAA 1731 ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 1428 TCCCGAGGAAGACAAGAAGCTACTGGAAATGAAACGGATGGTTGTGTTGGAGAAACAGAA 1487 Query 1732 GAAACGGCTTAAAGAAGCTATGGACTCAAAACCAGCACCTGTAGAAGATAACTTGGAGCT 1791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1488 GAAACGGCTTAAAGAAGCTATGGACTCAAAACCAGCACCTGTAGAAGATAACTTGGAGCT 1547 Query 1792 TAAAGCAATGAAAGCAATGGGAGCAATGGAAGAAGGTGATGCCATATTTGGCTCTAATGC 1851 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1548 TAAAGCAATGAAAGCAATGGGAGCAATGGAGGAAGGTGATGCCATATTTGGCTCTAATGC 1607 Query 1852 TGAAGTGAACCTCGATTCCGAGGTATACTGGTGGCATGACAAGTACCGGCCAAGAAAACC 1911 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1608 TGAAGTGAACCTCGATTCTGAGGTATACTGGTGGCATGACAAGTACCGGCCAAGAAAACC 1667 Query 1912 GAAGTATTTCAATCGGGTTCACACAGGTTACGAATGGAATAAGTATAACCAAACTCACTA 1971 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1668 AAAGTATTTCAATCGGGTTCACACGGGTTACGAATGGAATAAGTATAACCAAACTCACTA 1727 Query 1972 TGACCACGATAATCCGCCTCCAAAAATCGTTCAAGGATACAAGTTTAACATCTTCTACCC 2031 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1728 TGACCACGATAACCCGCCTCCAAAAATCGTTCAAGGGTACAAGTTTAACATCTTCTACCC 1787 Query 2032 GGATTTAGTAGACAAAATTAAGGCTCCCATTTACACTATCGAAAAAGATGGGACAAGTGC 2091 ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1788 GGATTTAGTAGACAAGATTAAGGCTCCCATTTACACTATCGAAAAAGATGGTACAAGCGC 1847 Query 2092 TGAAACGTGTATGATCCGGTTCCATGCTGGTCCACCTTATGAAGACATTGCGTTCCGGAT 2151 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1848 TGAAACTTGTATGATCCGGTTCCATGCTGGTCCGCCTTATGAAGACATTGCGTTCCGGAT 1907 Query 2152 TGTGAATAAAGAATGGGAGTATTCTCACAAGAAAGGTTTCAAATGCACGTTTGAGCGTGG 2211 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || Sbjct 1908 TGTGAATAAAGAATGGGAATATTCTCATAAGAAAGGTTTCAAATGCACGTTTGAGCGGGG 1967 Query 2212 GATTCTGCATTTGTACTTCAACTTTAAACGACATAGGTACAGGCGATAA 2260 |||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1968 GATTCTACACTTGTACTTCAACTTTAAACGACATAGGTACAGGCGATAA 2016 Score = 1171 bits (634), Expect = 0.0 Identities = 730/775 (94%), Gaps = 11/775 (1%) Strand=Plus/Plus Query 110 ATGGGTTCTCATGGTAAGGGTAAGAGAGATAGAAGTGGAAGGCAGAAGAAGCGGAGAGAT 169 |||| ||||||||||||| ||||||||| |||| |||| || |||||||||||||||||| Sbjct 1 ATGGCTTCTCATGGTAAGAGTAAGAGAGGTAGAGGTGGGAGTCAGAAGAAGCGGAGAGAT 60 Query 170 GAATCCGAGTCTGGGTCTGAGTCCGAGTCTTACACTTCTGACTCTGATGGCTCAGATGAT 229 |||||||| |||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 61 GAATCCGA------GTCTGAGTCCGAGTCTTACACTTCTGACTCGGATGGCTCTGATGAT 114 Query 230 TTGTCGCCGCCCAGGAGTTCCAGGAGGAAGAAAGG---TAGCAGCAGTCGTCGGACTCGA 286 || |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 115 TTCTCGCCGCCCAGGAGTTCCAGGAGGAAGAAAGGCACCACCAGCAGTCGTCGGACTCGA 174 Query 287 CGCCGTAGCTCAAGTGATGATTCCAGTGACAGTGATGGTGGACGGAAGAGTAAGAAGAGA 346 |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 175 CGCCATAGCTCAAGTGATGATTCCAGTGACAGCGATGGTGGACGCAAGAGTAAGAAGAGA 234 Query 347 TCTTCATCTAAGGAT-TACTCGGAGGAAAAAGTTACGGAGTATATGTCTAAAAAAGCTCA 405 ||||||||||||||| | ||| ||||||||| | | ||| |||||||||||||||||||| Sbjct 235 TCTTCATCTAAGGATGT-CTCAGAGGAAAAACTCAAGGAATATATGTCTAAAAAAGCTCA 293 Query 406 GAAGAAGGCATTACGTGCAGCAAAGAAACTGAAGACGCAGTCAGTGTCAGGGTACTCCAA 465 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 294 GAAGAAGGCATTACGTGCAGCAAAGAAACTGAAGACGCAGTCAGTGTCAGGCTACTCCAA 353 Query 466 TGATTCAAACCCATTTGGTGATTCAAATCTCACTGAGACATTTGTGTGGCGGAAGAAGAT 525 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 354 CGATTCAAACCCATTTGGGGATTCGAATCTCACTGAGACATTTGTGTGGCGGAAGAAGAT 413 Query 526 TGAAAAAGATGTTCATCGAGGAGTACCGCTGGAAGAATTTTCCGTTAAAGCTgagaagag 585 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 414 TGAAAAAGATGTTCACCGTGGAGTACCGCTGGAAGAATTTTCCGTTAAAGCTGAGAAGAG 473 Query 586 aagacaccgggaaaggatgacagaggttgaaaaggttaagaagaggagagaagagagagC 645 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 AAGACACAGGGAAAGGATGACAGAGGTTGAAAAGGTTAAGAAGAGGAGAGAAGAGAGAGC 533 Query 646 AGTGGAGAAAGCTCGACATGAAGAAGAAATGGCATTGTTAGCTAGAGAACGTGCTCGGGC 705 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 534 AGTGGAGAAAGCTCGACATGAGGAAGAAATGGCATTATTAGCTAGAGAACGTGCTCGAGC 593 Query 706 TGAGTTCCATGATTGGGAGAAGAAAGAGGAAGAGTTCCATTTCGATCAAAGCAAGGTGAG 765 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 TGAGTTCCATGATTGGGAGAAGAAAGAGGAAGAGTTCCATTTCGATCAAAGCAAGGTGAG 653 Query 766 GTCAGAGATTAGATTACGTGAAGGTCGACTGAAGCCAATCGACGTCCTCTGCAAGCACTT 825 |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 654 GTCAGAGATTAGATTACGTGAAGGCCGACTTAAGCCAATCGACGTGCTCTGCAAGCACTT 713 Query 826 GGATGGTTCAGATGATTTGGATATCGAGCTCAGTGAACCGTACATGGTTTTCAAG 880 |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 714 GGATGGTTCAGATGATCTGGATATCGAGCTCAGTGAACCCTACATGGTTTTCAAG 768 > Ahg934316 jgi|Araly1|934316|scaffold_402304.1 Length=1686 Score = 573 bits (310), Expect = 2e-162 Identities = 445/510 (87%), Gaps = 9/510 (2%) Strand=Plus/Plus Query 1774 AGAAGATAACTTGGAGCTTAAAGCAATGAAAGCAATGGGAGCAATGGAAGAAGGTGATGC 1833 ||||||||||||||||||||| ||||||||| ||||| ||| |||||| |||||| ||| Sbjct 1183 AGAAGATAACTTGGAGCTTAAGGCAATGAAAACAATGAGAGAAATGGAGGAAGGTTATGT 1242 Query 1834 CATATTTGGCTCTAATGCTGAAGTGAACCTCGATTCCGAGGTATACTGGTGGCATGACAA 1893 |||||||||||||||||||||||||||| ||| || |||||| | |||||||||||| Sbjct 1243 TGTATTTGGCTCTAATGCTGAAGTGAACCTTGATCCCAAGGTATGCAAGTGGCATGACAA 1302 Query 1894 GTACCGGCC-AAGAAAACCGAAGTATTTCAATCGGGTTCACACAGGTTACGAATGGAATA 1952 ||||||||| || |||||| ||||||||||| || |||||||| |||||||| ||||||| Sbjct 1303 GTACCGGCCTAA-AAAACCCAAGTATTTCAACCGAGTTCACACGGGTTACGAGTGGAATA 1361 Query 1953 AGTATAACCAAACTCACTATGACCACGATAATCCGCCTCCAAAAATCGTTCAAGGATACA 2012 ||||||||||||| || ||||| ||| |||| |||||||||||| | |||||||| |||| Sbjct 1362 AGTATAACCAAACACATTATGATCACCATAACCCGCCTCCAAAATTTGTTCAAGGGTACA 1421 Query 2013 AGTTTAACATCTTCTACCCGGATTTAGTAGACAAAATT-AAGGCTCCCATTTACACTATC 2071 |||||||||||||||||||||||||||||||| | | | ||| ||||| || |||||| Sbjct 1422 AGTTTAACATCTTCTACCCGGATTTAGTAGACGACACTGAAGT-TCCCACTTGCACTATA 1480 Query 2072 GAAAAAGATGGGACAAG-TGCTGAAACGTGTATGATCCGGTTCCATGCTGGTCCACCTTA 2130 ||||||||||||||||| | ||||||| ||||| |||||||| | |||||||| ||||| Sbjct 1481 GAAAAAGATGGGACAAGCT-CTGAAACTTGTATAATCCGGTTTGAAGCTGGTCCGCCTTA 1539 Query 2131 TGAAGACATTGCGTTCCGGATTGTGAATAAAGAATGGGAGTATTCTCACAAGAAAGGTTT 2190 |||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||| Sbjct 1540 TGAAGACATTGCGTTCCGGATTGTGAATAAGGAATGGGAGAAATCTCGTAAGAAAGGTTA 1599 Query 2191 CAAATGCACGTTTGAGCGTGGGATTCTGCATTTGTACTTCAACTTTAAACGACATAGGTA 2250 ||||| |||||| |||| ||||||||| ||||||||| ||||||||||||| | |||| Sbjct 1600 CAAATACACGTTCGAGCATGGGATTCTACATTTGTAC---AACTTTAAACGACTTCGGTA 1656 Query 2251 CAGGCGATAACCTTATCGGAGTTTGGCTGG 2280 |||||||||| || ||||||||||||||| Sbjct 1657 CAGGCGATAAACTGGTCGGAGTTTGGCTGG 1686 Score = 302 bits (163), Expect = 1e-80 Identities = 201/219 (92%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 1205 TTGCTTGCTCAAGAGAGGGGACTACACGCTGGTGTTGAAGCTGATGTGAGAAAACTTCTC 1264 |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 768 TTGC-TGCTCAAGAAAGGGGACTACACGCTGGTGTTGAAGCTGATGTGAGAGAACTTCTT 826 Query 1265 GATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAATCGCAGCTGCGT 1324 ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| Sbjct 827 GATGGGAAGACCCACGCGGAGCTTGTACAACTGCAGTTTGACATCGAGTCGCAGCTGCGA 886 Query 1325 TCTGG-GTCTGCGAAAGTAGTAGAGTATTGGGAAGCAGTTCTTAAACGCCTCGAAATATA 1383 ||||| | | || |||||||| |||||||||||||| |||||||||||| || | ||||| Sbjct 887 TCTGGAG-CAGCCAAAGTAGTGGAGTATTGGGAAGCGGTTCTTAAACGCATCCATATATA 945 Query 1384 CAAGGCAAAGGCTTGCTTGAAGGAAATACACGCTGAGAT 1422 |||||||||||||||||||||||||||| |||||||||| Sbjct 946 CAAGGCAAAGGCTTGCTTGAAGGAAATAAACGCTGAGAT 984 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92940197800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5