BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03920.1
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311482 jgi|Araly1|311482|fgenesh1_pm.C_scaffold_1000262 2806 0.0
> Ahg311482 jgi|Araly1|311482|fgenesh1_pm.C_scaffold_1000262
Length=1713
Score = 2806 bits (1519), Expect = 0.0
Identities = 1652/1716 (96%), Gaps = 9/1716 (1%)
Strand=Plus/Plus
Query 153 ATGGATTCTGCAAGAAGTTGGTTTCACAAGTTTCAACCACGAGATAAGCCTCGGAAAAAG 212
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCTGCGAGAAGTTGGTTTCACAAGTTTCAACCACGAGATAAGCCTCGGAAAAAA 60
Query 213 GATATGTTCTCCGGAAGCACTTACGGCGGTGGCGTGACAGAAACCACCGTCCCCGACGGA 272
|| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 61 GACATGTTCTCCGGAAGCGCTTACGGCGGTGGCGCGACAGAAACCACCGCCCCCGACGGA 120
Query 273 GGAAATGATACAGAAACGGCAACGAAACTTCCACCACTAGGCGGTGACGGAGAAGCACTC 332
|||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 121 GGAAATGAAACAGAAACGGCGGCCAAACTTCCACCAATAGGCGGTGACGGAGAAGCACTC 180
Query 333 TCAAATTCAACAAAACAGAAAGTTGCTGCAGCCAAACAGTACATTGAGAATCATTATAAG 392
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAAATACAACAAAACAGAAAGTTGCTGCAGCCAAACAGTACATTGAGAATCATTATAAG 240
Query 393 GAACAGATGAAGAACCTCAACGAGAGGAAAGAGAGACGAACAACG-TTAGAGAAGAAGCT 451
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 241 GAACAGATGAAGAACCTCAACGAGAGGAAAGAGAGACGAACAACGCTT-GAGAAGAAGCT 299
Query 452 AGCGGATGCAGATGTATGTGAAGAAGACCAAACCAATCTTATGAAGTTTCTTGAGAAGAA 511
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 AGCAGATGCAGATGTATGTGAAGAAGACCAAAACAATCTTATGAAGTTTCTTGAGAAGAA 359
Query 512 AGAAACAGAGTACATGAGACTCCAAAGGCATAAAATGGGTGCTGATGACTTCGAACTCTT 571
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AGAAACTGAGTACATGAGACTCCAAAGGCATAAAATGGGTGCTGATGATTTCGAACTCTT 419
Query 572 AACTATGATCGGTAAAGGTGCTTTTGGAGAGGTTCGAGTTGTTAGAGAGATCAACACAGG 631
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACTATGATTGGTAAAGGTGCTTTTGGAGAGGTTCGAGTTGTTAGAGAGATCAACACAGG 479
Query 632 TCATGTTTTTGCTATGAAGAAACTCAAGAAATCAGAAATGCTTCG-CAGAGGCCAGGTGG 690
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 480 TCATGTTTTTGCTATGAAGAAACTCAAGAAATCAGAAATGCTTCGTC-GAGGCCAGGTGG 538
Query 691 AGCATGTAAGAGCAGAGAGGAATCTATTGGCAGAAGTAGATAGTAACTGTATAGTGAAGC 750
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 AGCATGTAAGAGCAGAGAGGAATCTATTGGCAGAAGTAGACAGTAACTGTATAGTGAAGC 598
Query 751 TTTACTGTTCTTTTCAAGACAATGAGTATCTTTATCTGATAATGGAGTATTTGCCCGGTG 810
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 599 TTTACTGTTCTTTTCAAGACAATGAGTATCTTTACCTGATAATGGAGTATTTGCCTGGAG 658
Query 811 GCGATATGATGACTCTTCTGATGAGGAAAGACACTTTAAGTGAAGATGAAGCTAAGTTCT 870
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 659 GAGATATGATGACACTTCTGATGAGGAAAGACACTTTAAGTGAATATGAAGCTAAGTTCT 718
Query 871 ATATCGCCGAATCTGTTCTCGCTATAGAATCTATCCATAACCGCAACTATATCCACAGAG 930
| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 719 ACATCGCTGAAGCTGTTCTCGCTATCGAATCTATCCATAACCGCAACTATATCCACAGGG 778
Query 931 ACATAAAGCCGGATAACTTGTTGCTTGATAGATATGGACATTTAAGGTTATCTGATTTTG 990
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 779 ACATAAAGCCGGATAACTTGTTGCTTGATAGATATGGACATTTGAGGTTGTCTGATTTTG 838
Query 991 GACTATGTAAGCCATTGGATTGTAGTGTTATTGACGGAGAAGATTTCACGGTAGGAAATG 1050
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 839 GACTATGTAAGCCATTGGATTGTAGTGTTATTGACGGAGAAGATTTCTCGGTAGGGAATT 898
Query 1051 CGGGTAGCGGAGGAGGTTCAGAGAGCGTATCAACCACTCCTAAACGCTCGCAGCAAGAAC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGGGTAGCGGAGGAGGTTCAGAGAGCGTATCAACCACTCCTAAACGCTCGCAGCAAGAAC 958
Query 1111 AGTTGGAACATTGGCAGAAGAATCGAAGAATGCTTGCTTACTCAACCGTTGGTACACCAG 1170
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 AGTTGGAACATTGGCAGAAGAATCGAAGAATGCTTGCTTACTCAACTGTTGGTACACCAG 1018
Query 1171 ACTACATTGCACCTGAAGTCTTGTTAAAGAAAGGATACGGCATGGAATGTGACTGGTGGT 1230
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACTACATTGCACCCGAAGTCTTGTTAAAGAAAGGATACGGCATGGAATGTGACTGGTGGT 1078
Query 1231 CACTAGGAGCTATAATGTACGAAATGCTGGTTGGGTATCCACCCTTTTACGCCGACGACC 1290
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1079 CACTAGGAGCTATAATGTACGAAATGCTTGTTGGGTATCCACCCTTTTACGCAGACGACC 1138
Query 1291 CAATGTCTACTTGTAGAAAGATAGTGAATTGGAAAACACATTTGAAGTTCCCTGAAGAAT 1350
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAATGTCCACTTGTAGAAAGATAGTGAATTGGAAAACACATTTGAAGTTCCCTGAAGAAG 1198
Query 1351 CAAGGCTATCACGAGGGGCAAGAGATCTTATTGGTAAGCTCTTGTGTAGCGTTAACCAAC 1410
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAAGGCTATCACGAGAGGCAAGAGATCTTATTGGTAAGCTCTTGTGTAGCGTTAACCAAC 1258
Query 1411 GACTAGGCTCTACTGGTGCCTCCCAAATTAAGGCACATCCTTGG-TTCGAAGGTGTACAA 1469
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||
Sbjct 1259 GACTAGGCTCTACTGGTGCCTCACAAATTAAGGCACATCCTTGGTTTC-AAGGTGTAGAA 1317
Query 1470 TGGGAAAAGATTTACCAAATGGAAGCTGCGTTCATTCCTGAGGTCAACGACGATTTGGAT 1529
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 TGGGAAAATATTTACCAAATTGAAGCTGCGTTTATTCCTGAGGTCAACGACGATTTGGAT 1377
Query 1530 ACTCAAAACTTTGAGAAGTTCGATGAGGAAGATAATCAAACTCAAGCACCTTCTAGAACA 1589
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1378 ACTCAAAACTTTGAGAAGTTCGATGAGGAAGATAATGAAACTCAAGCACCCTCTAGAACA 1437
Query 1590 GGGCCATGGAGAAAAATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAA 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GGGCCATGGAGAAAAATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAA 1497
Query 1650 AACTTTGAAATCGTCAACGATTATCAAGTCCCCGGTATAGCCGAACTAAAAAAGAAAGAG 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AACTTTGAAATCGTCAACGATTATCAAGTCCCCGGTATAGCCGAACTAAAAAAGAAAGAG 1557
Query 1710 TCAAAATCAAAGAGACCATCGGTTAAGTCACTATTCGAGAGCGAATCAGA--C-TCGTCA 1766
|||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1558 ACAAAATCAAAGAGACCATCGGTAAAGTCACTATTCGAGAGCGAATCAGAGTCCTCGTCG 1617
Query 1767 TCTTCTGGTTCGGAGCAACAGACCATTAACCGGAGCTATTCTAATCCGACGCCTCGTGGA 1826
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1618 TCTTCTGGTTCGGAGCAACAGACCATTAACCGGAGCTTTTCGAATCCGACGCCTCGTGGA 1677
Query 1827 ATGGAACCCAACCTGAGACGTCTAGATTCTGAGTAG 1862
|||||||||||||| ||||||||||| |||||||||
Sbjct 1678 ATGGAACCCAACCTCAGACGTCTAGACTCTGAGTAG 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5